Wall clock time and date at job start Mon Mar 30 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48499 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47199 * 300.00171 * 3 2 1 6 6 H 1.48500 * 109.47070 * 60.00157 * 3 2 1 7 7 C 1.37875 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47343 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47380 * 179.97438 * 11 10 9 13 13 C 1.46893 * 111.00166 * 179.97438 * 12 11 10 14 14 H 1.09006 * 110.88573 * 37.36175 * 13 12 11 15 15 C 1.54631 * 110.97315 * 273.55179 * 13 12 11 16 16 C 1.51281 * 104.31067 * 217.14992 * 15 13 12 17 17 O 1.21285 * 124.93839 * 196.21860 * 16 15 13 18 18 N 1.34413 * 110.11904 * 16.18238 * 16 15 13 19 19 C 1.46505 * 124.34827 * 180.38542 * 18 16 15 20 20 C 1.52999 * 109.47102 * 90.03032 * 19 18 16 21 21 C 1.53003 * 117.49638 * 243.62176 * 20 19 18 22 22 C 1.52999 * 117.49884 * 174.99882 * 20 19 18 23 23 C 1.46766 * 111.30127 * 0.41169 * 18 16 15 24 24 H 0.97001 * 120.00606 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 60.00307 * 9 7 2 26 26 H 1.09003 * 109.47591 * 300.00614 * 9 7 2 27 27 H 1.08996 * 109.47396 * 60.00142 * 10 9 7 28 28 H 1.09007 * 109.47073 * 300.00137 * 10 9 7 29 29 H 1.09004 * 109.47112 * 59.99879 * 11 10 9 30 30 H 1.08997 * 109.47119 * 300.00535 * 11 10 9 31 31 H 1.00899 * 110.99464 * 56.04658 * 12 11 10 32 32 H 1.09002 * 110.48855 * 98.40254 * 15 13 12 33 33 H 1.08998 * 110.48570 * 335.89314 * 15 13 12 34 34 H 1.09006 * 109.46618 * 210.02727 * 19 18 16 35 35 H 1.09000 * 109.46939 * 330.02505 * 19 18 16 36 36 H 1.09000 * 115.54821 * 29.32118 * 20 19 18 37 37 H 1.09004 * 117.49826 * 359.97438 * 21 20 19 38 38 H 1.08994 * 117.50128 * 145.01720 * 21 20 19 39 39 H 1.09003 * 117.49648 * 214.97374 * 22 20 19 40 40 H 1.08994 * 117.49688 * 359.97438 * 22 20 19 41 41 H 1.09000 * 110.24710 * 101.98191 * 23 18 16 42 42 H 1.09003 * 110.24362 * 223.98206 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0018 13 6 1.7349 -7.3949 -0.0018 14 1 0.8378 -7.3506 -0.6195 15 6 1.3930 -7.8392 1.4393 16 6 1.5896 -9.3391 1.4248 17 8 1.1648 -10.1034 2.2652 18 7 2.3029 -9.7015 0.3448 19 6 2.6670 -11.0829 0.0200 20 6 1.5747 -11.7069 -0.8509 21 6 0.8059 -12.8976 -0.2745 22 6 1.8239 -13.1146 -1.3960 23 6 2.6707 -8.5354 -0.4671 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8721 -3.6042 -0.8906 29 1 0.8541 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8885 31 1 3.0699 -6.0369 0.7796 32 1 0.3588 -7.5922 1.6795 33 1 2.0713 -7.3724 2.1534 34 1 3.6128 -11.0915 -0.5218 35 1 2.7703 -11.6574 0.9405 36 1 1.0246 -11.0116 -1.4850 37 1 1.0787 -13.2367 0.7249 38 1 -0.2501 -12.9859 -0.5294 39 1 1.4375 -13.3456 -2.3887 40 1 2.7662 -13.5959 -1.1345 41 1 3.7110 -8.2639 -0.2878 42 1 2.5121 -8.7469 -1.5246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716757905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:11 Heat of formation + Delta-G solvation = -22.563624 kcal Electronic energy + Delta-G solvation = -19575.876510 eV Core-core repulsion = 16555.913060 eV Total energy + Delta-G solvation = -3019.963450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66587 -37.73280 -37.22635 -35.44688 -33.59944 -31.98037 -30.08175 -27.69165 -26.95101 -25.49275 -22.71893 -22.55687 -21.46203 -21.28765 -20.16509 -19.55607 -17.25677 -16.68309 -16.22293 -15.80141 -15.44969 -14.95078 -14.75247 -14.45898 -14.12055 -13.96901 -13.75971 -13.30357 -12.94758 -12.71348 -12.35395 -12.17220 -11.95485 -11.84047 -11.53720 -11.45620 -11.34492 -10.89529 -10.78855 -10.63560 -10.49620 -10.38632 -9.99750 -9.72855 -9.37617 -9.07102 -8.93789 -8.36741 -8.34298 -6.00999 -4.03164 2.43475 2.72849 3.30603 3.38185 3.42314 3.47928 3.96419 4.30784 4.37730 4.43969 4.49126 4.56693 4.63890 4.84240 4.90651 4.97611 5.16764 5.23262 5.31179 5.35088 5.39791 5.43717 5.58055 5.58450 5.70105 5.74050 5.78297 5.83616 5.85142 6.24217 6.32790 6.64507 6.67203 6.91064 7.08481 7.17003 7.43510 7.66652 7.80532 7.99131 8.01829 8.42041 9.04314 9.61132 11.10451 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049667 B = 0.002622 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.621907 B =10676.662685 C =10800.467170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.677 5.677 13 C 0.080 3.920 14 H 0.100 0.900 15 C -0.189 4.189 16 C 0.522 3.478 17 O -0.534 6.534 18 N -0.618 5.618 19 C 0.157 3.843 20 C -0.174 4.174 21 C -0.173 4.173 22 C -0.176 4.176 23 C 0.110 3.890 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.343 0.657 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -23.409 -2.162 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.307 5.307 13 C -0.032 4.032 14 H 0.118 0.882 15 C -0.231 4.231 16 C 0.310 3.690 17 O -0.411 6.411 18 N -0.352 5.352 19 C 0.035 3.965 20 C -0.193 4.193 21 C -0.210 4.210 22 C -0.213 4.213 23 C -0.014 4.014 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.161 0.839 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.579 -23.732 -2.423 24.291 hybrid contribution 0.005 0.961 0.833 1.271 sum 4.585 -22.772 -1.591 23.283 Atomic orbital electron populations 1.69969 1.06066 1.26493 1.51042 1.25033 0.94851 0.99307 0.95379 0.86542 0.80130 0.83804 0.77562 1.19724 1.21019 1.21053 1.21285 0.93088 0.91025 1.50298 0.92604 1.19070 0.94009 0.91373 0.97171 1.21634 0.99234 0.92845 1.00842 1.22193 0.94066 0.90411 1.00324 1.60512 1.19862 1.00406 1.49899 1.22528 0.96837 0.89954 0.93839 0.88193 1.23207 1.05495 0.93839 1.00552 1.20858 0.76782 0.90813 0.80559 1.90706 1.51026 1.58778 1.40579 1.48297 1.54586 1.06853 1.25488 1.20915 0.96029 0.80628 0.98900 1.22772 1.02053 0.91400 1.03074 1.23020 0.97639 1.01989 0.98396 1.22953 1.01112 0.98444 0.98803 1.22181 0.99695 0.83809 0.95672 0.93067 0.96542 0.96771 0.93555 0.92444 0.91166 0.95250 0.83854 0.87969 0.87712 0.89831 0.89962 0.87521 0.88562 0.88912 0.88654 0.88647 0.90230 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.09 5.41 -26.73 -0.14 -2.23 16 11 C 0.06 0.90 5.55 -3.82 -0.02 0.88 16 12 N -0.68 -8.21 6.33 -104.88 -0.66 -8.87 16 13 C 0.08 0.82 3.44 -65.97 -0.23 0.59 16 14 H 0.10 1.03 7.92 -51.93 -0.41 0.62 16 15 C -0.19 -2.04 6.50 -26.74 -0.17 -2.21 16 16 C 0.52 6.58 8.02 -10.86 -0.09 6.49 16 17 O -0.53 -8.72 17.59 5.55 0.10 -8.62 16 18 N -0.62 -6.16 2.93 -172.27 -0.51 -6.67 16 19 C 0.16 1.34 6.22 -4.04 -0.03 1.31 16 20 C -0.17 -1.43 6.01 -90.62 -0.54 -1.98 16 21 C -0.17 -1.44 10.18 -26.73 -0.27 -1.71 16 22 C -0.18 -1.17 10.25 -26.73 -0.27 -1.44 16 23 C 0.11 0.95 7.10 -3.01 -0.02 0.93 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.34 3.88 8.21 -39.29 -0.32 3.55 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.07 7.65 -51.93 -0.40 0.68 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.83 348.60 -9.84 -41.67 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.40 Total: -0.87 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.34 Total: -12.33 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.43 Total: -41.61 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.10 Total: -8.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.83 -9.84 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716757905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.105 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds