Wall clock time and date at job start Mon Mar 30 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48499 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47199 * 300.00171 * 3 2 1 6 6 H 1.48500 * 109.47070 * 60.00157 * 3 2 1 7 7 C 1.37875 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47343 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47380 * 179.97438 * 11 10 9 13 13 C 1.46893 * 111.00166 * 179.97438 * 12 11 10 14 14 H 1.09006 * 110.88573 * 37.36175 * 13 12 11 15 15 C 1.54631 * 110.97315 * 273.55179 * 13 12 11 16 16 C 1.51281 * 104.31067 * 217.14992 * 15 13 12 17 17 O 1.21285 * 124.93839 * 196.21860 * 16 15 13 18 18 N 1.34413 * 110.11904 * 16.18238 * 16 15 13 19 19 C 1.46505 * 124.34827 * 180.38542 * 18 16 15 20 20 C 1.52999 * 109.47102 * 90.03032 * 19 18 16 21 21 C 1.53003 * 117.49638 * 243.62176 * 20 19 18 22 22 C 1.52999 * 117.49884 * 174.99882 * 20 19 18 23 23 C 1.46766 * 111.30127 * 0.41169 * 18 16 15 24 24 H 0.97001 * 120.00606 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 60.00307 * 9 7 2 26 26 H 1.09003 * 109.47591 * 300.00614 * 9 7 2 27 27 H 1.08996 * 109.47396 * 60.00142 * 10 9 7 28 28 H 1.09007 * 109.47073 * 300.00137 * 10 9 7 29 29 H 1.09004 * 109.47112 * 59.99879 * 11 10 9 30 30 H 1.08997 * 109.47119 * 300.00535 * 11 10 9 31 31 H 1.00899 * 110.99464 * 56.04658 * 12 11 10 32 32 H 1.09002 * 110.48855 * 98.40254 * 15 13 12 33 33 H 1.08998 * 110.48570 * 335.89314 * 15 13 12 34 34 H 1.09006 * 109.46618 * 210.02727 * 19 18 16 35 35 H 1.09000 * 109.46939 * 330.02505 * 19 18 16 36 36 H 1.09000 * 115.54821 * 29.32118 * 20 19 18 37 37 H 1.09004 * 117.49826 * 359.97438 * 21 20 19 38 38 H 1.08994 * 117.50128 * 145.01720 * 21 20 19 39 39 H 1.09003 * 117.49648 * 214.97374 * 22 20 19 40 40 H 1.08994 * 117.49688 * 359.97438 * 22 20 19 41 41 H 1.09000 * 110.24710 * 101.98191 * 23 18 16 42 42 H 1.09003 * 110.24362 * 223.98206 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0018 13 6 1.7349 -7.3949 -0.0018 14 1 0.8378 -7.3506 -0.6195 15 6 1.3930 -7.8392 1.4393 16 6 1.5896 -9.3391 1.4248 17 8 1.1648 -10.1034 2.2652 18 7 2.3029 -9.7015 0.3448 19 6 2.6670 -11.0829 0.0200 20 6 1.5747 -11.7069 -0.8509 21 6 0.8059 -12.8976 -0.2745 22 6 1.8239 -13.1146 -1.3960 23 6 2.6707 -8.5354 -0.4671 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8721 -3.6042 -0.8906 29 1 0.8541 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8885 31 1 3.0699 -6.0369 0.7796 32 1 0.3588 -7.5922 1.6795 33 1 2.0713 -7.3724 2.1534 34 1 3.6128 -11.0915 -0.5218 35 1 2.7703 -11.6574 0.9405 36 1 1.0246 -11.0116 -1.4850 37 1 1.0787 -13.2367 0.7249 38 1 -0.2501 -12.9859 -0.5294 39 1 1.4375 -13.3456 -2.3887 40 1 2.7662 -13.5959 -1.1345 41 1 3.7110 -8.2639 -0.2878 42 1 2.5121 -8.7469 -1.5246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716757905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:10 Heat of formation + Delta-G solvation = -42.397593 kcal Electronic energy + Delta-G solvation = -19576.736575 eV Core-core repulsion = 16555.913060 eV Total energy + Delta-G solvation = -3020.823515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56041 -38.42626 -38.28263 -36.66268 -35.28587 -33.49791 -31.39731 -28.67558 -28.08316 -26.85072 -24.26293 -23.26476 -22.41435 -21.98886 -21.71925 -20.43841 -18.51299 -18.08348 -17.44964 -16.75000 -16.51012 -16.30124 -15.92451 -15.59949 -15.18904 -14.97528 -14.86390 -14.39216 -14.05586 -13.83903 -13.69726 -13.43592 -13.30052 -12.84066 -12.67429 -12.55943 -12.43293 -12.39662 -12.22730 -12.14340 -11.54618 -11.42116 -11.33773 -11.13134 -11.05213 -10.81382 -10.53490 -9.75904 -9.39092 -8.18305 -6.28629 1.41541 1.42045 1.47107 1.55177 1.94277 2.42614 2.86735 2.99847 3.15342 3.45360 3.60230 3.74988 3.92631 3.98094 4.03286 4.10831 4.30942 4.33160 4.44265 4.51491 4.53747 4.66764 4.69793 4.76499 4.77432 4.82411 4.90920 4.99483 5.06802 5.17982 5.19082 5.23503 5.30174 5.55841 5.56329 5.80308 5.90068 5.97513 6.07927 6.29561 6.44491 6.89581 7.08450 7.40755 8.93692 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049667 B = 0.002622 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.621907 B =10676.662685 C =10800.467170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.093 4.093 11 C 0.072 3.928 12 N -0.669 5.669 13 C 0.085 3.915 14 H 0.101 0.899 15 C -0.185 4.185 16 C 0.515 3.485 17 O -0.580 6.580 18 N -0.610 5.610 19 C 0.154 3.846 20 C -0.181 4.181 21 C -0.192 4.192 22 C -0.153 4.153 23 C 0.115 3.885 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.350 0.650 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -23.754 -3.179 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.300 5.300 13 C -0.026 4.026 14 H 0.120 0.880 15 C -0.227 4.227 16 C 0.303 3.697 17 O -0.461 6.461 18 N -0.342 5.342 19 C 0.032 3.968 20 C -0.200 4.200 21 C -0.229 4.229 22 C -0.191 4.191 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.170 0.830 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.498 -24.091 -3.470 25.192 hybrid contribution -0.592 1.029 1.136 1.643 sum 5.905 -23.062 -2.334 23.921 Atomic orbital electron populations 1.70097 1.07786 1.27629 1.52021 1.25983 0.95762 1.03386 0.94924 0.85419 0.79170 0.78898 0.77682 1.18490 1.20465 1.20548 1.21756 0.93595 0.92438 1.49972 0.92138 1.18991 0.94527 0.93178 0.94784 1.21373 0.97981 0.92782 1.00991 1.21870 0.93941 0.89739 1.00189 1.60411 1.19093 1.00115 1.50368 1.22509 0.97273 0.89386 0.93466 0.88045 1.23180 1.05467 0.92829 1.01193 1.21134 0.76666 0.91208 0.80650 1.90680 1.53113 1.59887 1.42389 1.48390 1.53274 1.07944 1.24619 1.21077 0.97359 0.79577 0.98743 1.22748 1.02083 0.91936 1.03269 1.23043 0.98108 1.03015 0.98783 1.23034 1.00865 0.96665 0.98513 1.22232 0.99761 0.82440 0.96267 0.92858 0.98938 0.99161 0.92987 0.92539 0.91440 0.95449 0.82981 0.88471 0.87011 0.87102 0.91260 0.87882 0.89550 0.89159 0.87533 0.87305 0.88971 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.55 5.41 30.59 0.17 -3.39 16 11 C 0.07 2.13 5.55 86.30 0.48 2.61 16 12 N -0.67 -14.74 6.33 -485.75 -3.08 -17.82 16 13 C 0.09 1.56 3.44 46.05 0.16 1.72 16 14 H 0.10 1.89 7.92 -2.38 -0.02 1.88 16 15 C -0.18 -3.80 6.50 30.59 0.20 -3.60 16 16 C 0.52 12.72 8.02 87.90 0.71 13.42 16 17 O -0.58 -19.32 17.59 -3.05 -0.05 -19.37 16 18 N -0.61 -11.14 2.93 -817.54 -2.40 -13.54 16 19 C 0.15 2.35 6.22 86.38 0.54 2.89 16 20 C -0.18 -2.72 6.01 -10.79 -0.06 -2.78 16 21 C -0.19 -3.11 10.18 30.60 0.31 -2.80 16 22 C -0.15 -1.72 10.25 30.60 0.31 -1.41 16 23 C 0.12 1.68 7.10 86.90 0.62 2.29 16 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 25 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.07 2.06 8.09 -2.38 -0.02 2.04 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.35 7.04 8.21 -89.69 -0.74 6.30 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.11 2.14 7.65 -2.39 -0.02 2.13 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.55 8.03 -2.39 -0.02 1.53 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.19 8.07 -2.39 -0.02 1.18 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.27 348.60 1.29 -67.98 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.25 Total: 12.69 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.26 Total: -19.53 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -5.19 Total: -87.76 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.27 1.29 -67.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716757905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.582 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds