Wall clock time and date at job start Mon Mar 30 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48506 * 109.47086 * 239.99782 * 3 2 1 5 5 H 1.48498 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47019 * 120.00307 * 3 2 1 7 7 C 1.37876 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00313 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47539 * 185.33713 * 9 7 2 11 11 C 1.46890 * 111.00538 * 189.37804 * 10 9 7 12 12 C 1.50696 * 109.47714 * 164.05488 * 11 10 9 13 13 O 1.21283 * 119.99442 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00283 * 180.02562 * 12 11 10 15 15 C 1.46925 * 120.62983 * 359.72201 * 14 12 11 16 16 C 1.53622 * 108.54221 * 126.37008 * 15 14 12 17 17 C 1.53044 * 109.24553 * 54.85602 * 16 15 14 18 18 C 1.53043 * 109.53637 * 298.51250 * 17 16 15 19 19 C 1.46934 * 120.63018 * 179.97438 * 14 12 11 20 20 C 1.46897 * 110.99905 * 65.42136 * 10 9 7 21 21 C 1.53001 * 117.50149 * 128.75405 * 20 10 9 22 22 C 1.53006 * 117.50016 * 60.09292 * 20 10 9 23 23 H 0.97006 * 120.00075 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47318 * 65.33766 * 9 7 2 25 25 H 1.09004 * 109.47275 * 305.34035 * 9 7 2 26 26 H 1.09006 * 109.47397 * 284.05797 * 11 10 9 27 27 H 1.09001 * 109.47012 * 44.05553 * 11 10 9 28 28 H 1.09003 * 109.58257 * 246.19601 * 15 14 12 29 29 H 1.08997 * 109.58716 * 6.62301 * 15 14 12 30 30 H 1.09000 * 109.63320 * 294.86377 * 16 15 14 31 31 H 1.09002 * 109.43204 * 174.71945 * 16 15 14 32 32 H 1.08993 * 109.46097 * 178.49366 * 17 16 15 33 33 H 1.08996 * 109.44760 * 58.52277 * 17 16 15 34 34 H 1.09010 * 109.49430 * 301.41294 * 18 17 16 35 35 H 1.08996 * 109.49605 * 181.31844 * 18 17 16 36 36 H 1.09003 * 109.58340 * 353.37458 * 19 14 12 37 37 H 1.09001 * 109.58288 * 113.79451 * 19 14 12 38 38 H 1.09003 * 115.55145 * 274.42471 * 20 10 9 39 39 H 1.09010 * 117.49400 * 0.02562 * 21 20 10 40 40 H 1.08994 * 117.50491 * 145.01815 * 21 20 10 41 41 H 1.08994 * 117.49756 * 214.97990 * 22 20 10 42 42 H 1.09003 * 117.49443 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2003 -3.6128 0.1277 11 6 1.5317 -4.9024 -0.0906 12 6 2.5666 -5.9688 -0.3411 13 8 3.7452 -5.6827 -0.3376 14 7 2.1824 -7.2404 -0.5690 15 6 0.7588 -7.6035 -0.5703 16 6 0.4390 -8.3219 -1.8901 17 6 1.3901 -9.5086 -2.0617 18 6 2.8331 -9.0028 -2.1263 19 6 3.1797 -8.2910 -0.8154 20 6 2.8734 -3.5831 1.4330 21 6 2.8701 -4.8709 2.2591 22 6 1.9966 -3.6873 2.6826 23 1 -0.4850 0.8401 0.0004 24 1 0.6975 -2.5992 -0.9342 25 1 0.5548 -2.5168 0.8380 26 1 0.9478 -5.1630 0.7921 27 1 0.8709 -4.8275 -0.9542 28 1 0.5499 -8.2662 0.2695 29 1 0.1517 -6.7020 -0.4869 30 1 0.5657 -7.6307 -2.7233 31 1 -0.5900 -8.6807 -1.8676 32 1 1.1489 -10.0368 -2.9840 33 1 1.2806 -10.1867 -1.2154 34 1 2.9372 -8.3052 -2.9574 35 1 3.5080 -9.8462 -2.2719 36 1 4.1704 -7.8432 -0.8937 37 1 3.1646 -9.0086 0.0049 38 1 3.7590 -2.9503 1.4910 39 1 2.3688 -5.7404 1.8337 40 1 3.7533 -5.0853 2.8608 41 1 2.3056 -3.1234 3.5627 42 1 0.9202 -3.7775 2.5360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:05 Heat of formation + Delta-G solvation = 2.505933 kcal Electronic energy + Delta-G solvation = -21197.761995 eV Core-core repulsion = 18178.885643 eV Total energy + Delta-G solvation = -3018.876352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19010 -38.19854 -36.66522 -33.38403 -32.90045 -32.02133 -31.19464 -28.30415 -25.82769 -24.65907 -23.16437 -22.66590 -21.56837 -21.00563 -19.44591 -18.40206 -16.96826 -16.48386 -16.14116 -15.54338 -14.87403 -14.64037 -14.58197 -14.26610 -14.02587 -13.73589 -13.16281 -13.04264 -12.68619 -12.40305 -12.25325 -12.18347 -11.51963 -11.38680 -11.15125 -11.02959 -10.90334 -10.81164 -10.78657 -10.69162 -10.61374 -9.96974 -9.94314 -9.46806 -9.35307 -9.01861 -8.49627 -8.38929 -7.20362 -5.99777 -3.99730 3.03160 3.11827 3.37829 3.40773 3.45254 4.44239 4.54928 4.56484 4.66102 4.71587 4.84882 4.96049 5.09158 5.16245 5.35830 5.35864 5.39085 5.50670 5.53933 5.58639 5.61653 5.67492 5.71198 5.78825 5.80397 5.82103 5.89944 5.98295 6.11409 6.17027 6.43273 6.61649 6.64724 6.91911 7.15234 7.34219 7.56134 7.82693 8.04792 8.17258 8.51414 8.63408 9.07799 9.64061 11.11274 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.004668 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.655887 B = 5996.704586 C = 6283.635538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.491 5.491 11 C 0.033 3.967 12 C 0.519 3.481 13 O -0.511 6.511 14 N -0.625 5.625 15 C 0.107 3.893 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.135 4.135 19 C 0.113 3.887 20 C 0.078 3.922 21 C -0.198 4.198 22 C -0.214 4.214 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.003 0.997 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -18.844 -0.583 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.214 5.214 11 C -0.099 4.099 12 C 0.307 3.693 13 O -0.384 6.384 14 N -0.362 5.362 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.173 4.173 19 C -0.010 4.010 20 C -0.032 4.032 21 C -0.236 4.236 22 C -0.254 4.254 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.858 -18.450 -0.968 18.495 hybrid contribution -0.434 0.697 0.620 1.029 sum 0.425 -17.753 -0.348 17.762 Atomic orbital electron populations 1.69941 1.06021 1.26823 1.51360 1.24948 0.94846 0.99213 0.95480 0.86553 0.79421 0.82690 0.78716 1.20172 1.21440 1.20266 1.21054 0.93626 0.89585 1.49638 0.91825 1.19818 0.89761 0.87077 0.96208 1.61907 1.31427 1.00502 1.27535 1.22038 0.94658 0.91524 1.01646 1.20831 0.90668 0.82171 0.75612 1.90666 1.18404 1.80416 1.48925 1.48195 1.06754 1.08208 1.73044 1.21794 0.81798 1.00555 0.97467 1.22003 0.99449 0.97889 0.98126 1.21501 0.94868 0.97426 1.01801 1.21910 0.96801 1.00246 0.98360 1.21464 0.93727 0.89564 0.96198 1.22416 0.98942 0.97355 0.84438 1.23263 1.02253 0.92908 1.05162 1.23306 0.98069 1.02170 1.01827 0.92949 0.95507 0.97965 0.92745 0.88733 0.91637 0.89537 0.91221 0.90846 0.91886 0.91938 0.91452 0.91080 0.89071 0.92183 0.86469 0.89951 0.89453 0.89213 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.21 8.68 -34.44 -0.30 -14.51 16 8 H 0.06 1.83 7.74 -52.49 -0.41 1.42 16 9 C 0.20 5.06 4.62 -4.98 -0.02 5.04 16 10 N -0.49 -11.08 4.36 -229.52 -1.00 -12.08 16 11 C 0.03 0.60 3.34 -4.98 -0.02 0.59 16 12 C 0.52 9.05 5.56 -10.99 -0.06 8.99 16 13 O -0.51 -10.76 14.48 5.56 0.08 -10.68 16 14 N -0.62 -8.32 2.97 -172.53 -0.51 -8.83 16 15 C 0.11 1.10 6.37 -3.49 -0.02 1.07 16 16 C -0.14 -1.18 6.10 -26.39 -0.16 -1.34 16 17 C -0.12 -0.94 5.88 -26.69 -0.16 -1.10 16 18 C -0.13 -1.25 6.08 -26.63 -0.16 -1.41 16 19 C 0.11 1.31 6.43 -3.73 -0.02 1.28 16 20 C 0.08 1.65 4.86 -67.71 -0.33 1.32 16 21 C -0.20 -3.53 8.37 -26.69 -0.22 -3.75 16 22 C -0.21 -4.05 9.27 -26.69 -0.25 -4.29 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.73 7.88 -51.93 -0.41 0.32 16 25 H 0.00 0.07 6.96 -51.93 -0.36 -0.29 16 26 H 0.05 0.92 5.89 -51.93 -0.31 0.61 16 27 H 0.09 1.63 7.38 -51.93 -0.38 1.25 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.90 5.93 -51.93 -0.31 0.59 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.12 2.62 8.14 -51.93 -0.42 2.19 16 39 H 0.08 1.42 4.83 -51.92 -0.25 1.16 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.09 1.68 7.13 -51.93 -0.37 1.31 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -32.01 325.58 -9.58 -41.59 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.94 Total: 0.65 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.82 Total: -6.61 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.78 Total: -46.79 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.01 -9.58 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.095 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds