Wall clock time and date at job start Mon Mar 30 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48506 * 109.47086 * 239.99782 * 3 2 1 5 5 H 1.48498 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47019 * 120.00307 * 3 2 1 7 7 C 1.37876 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00313 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47539 * 185.33713 * 9 7 2 11 11 C 1.46890 * 111.00538 * 189.37804 * 10 9 7 12 12 C 1.50696 * 109.47714 * 164.05488 * 11 10 9 13 13 O 1.21283 * 119.99442 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00283 * 180.02562 * 12 11 10 15 15 C 1.46925 * 120.62983 * 359.72201 * 14 12 11 16 16 C 1.53622 * 108.54221 * 126.37008 * 15 14 12 17 17 C 1.53044 * 109.24553 * 54.85602 * 16 15 14 18 18 C 1.53043 * 109.53637 * 298.51250 * 17 16 15 19 19 C 1.46934 * 120.63018 * 179.97438 * 14 12 11 20 20 C 1.46897 * 110.99905 * 65.42136 * 10 9 7 21 21 C 1.53001 * 117.50149 * 128.75405 * 20 10 9 22 22 C 1.53006 * 117.50016 * 60.09292 * 20 10 9 23 23 H 0.97006 * 120.00075 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47318 * 65.33766 * 9 7 2 25 25 H 1.09004 * 109.47275 * 305.34035 * 9 7 2 26 26 H 1.09006 * 109.47397 * 284.05797 * 11 10 9 27 27 H 1.09001 * 109.47012 * 44.05553 * 11 10 9 28 28 H 1.09003 * 109.58257 * 246.19601 * 15 14 12 29 29 H 1.08997 * 109.58716 * 6.62301 * 15 14 12 30 30 H 1.09000 * 109.63320 * 294.86377 * 16 15 14 31 31 H 1.09002 * 109.43204 * 174.71945 * 16 15 14 32 32 H 1.08993 * 109.46097 * 178.49366 * 17 16 15 33 33 H 1.08996 * 109.44760 * 58.52277 * 17 16 15 34 34 H 1.09010 * 109.49430 * 301.41294 * 18 17 16 35 35 H 1.08996 * 109.49605 * 181.31844 * 18 17 16 36 36 H 1.09003 * 109.58340 * 353.37458 * 19 14 12 37 37 H 1.09001 * 109.58288 * 113.79451 * 19 14 12 38 38 H 1.09003 * 115.55145 * 274.42471 * 20 10 9 39 39 H 1.09010 * 117.49400 * 0.02562 * 21 20 10 40 40 H 1.08994 * 117.50491 * 145.01815 * 21 20 10 41 41 H 1.08994 * 117.49756 * 214.97990 * 22 20 10 42 42 H 1.09003 * 117.49443 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2003 -3.6128 0.1277 11 6 1.5317 -4.9024 -0.0906 12 6 2.5666 -5.9688 -0.3411 13 8 3.7452 -5.6827 -0.3376 14 7 2.1824 -7.2404 -0.5690 15 6 0.7588 -7.6035 -0.5703 16 6 0.4390 -8.3219 -1.8901 17 6 1.3901 -9.5086 -2.0617 18 6 2.8331 -9.0028 -2.1263 19 6 3.1797 -8.2910 -0.8154 20 6 2.8734 -3.5831 1.4330 21 6 2.8701 -4.8709 2.2591 22 6 1.9966 -3.6873 2.6826 23 1 -0.4850 0.8401 0.0004 24 1 0.6975 -2.5992 -0.9342 25 1 0.5548 -2.5168 0.8380 26 1 0.9478 -5.1630 0.7921 27 1 0.8709 -4.8275 -0.9542 28 1 0.5499 -8.2662 0.2695 29 1 0.1517 -6.7020 -0.4869 30 1 0.5657 -7.6307 -2.7233 31 1 -0.5900 -8.6807 -1.8676 32 1 1.1489 -10.0368 -2.9840 33 1 1.2806 -10.1867 -1.2154 34 1 2.9372 -8.3052 -2.9574 35 1 3.5080 -9.8462 -2.2719 36 1 4.1704 -7.8432 -0.8937 37 1 3.1646 -9.0086 0.0049 38 1 3.7590 -2.9503 1.4910 39 1 2.3688 -5.7404 1.8337 40 1 3.7533 -5.0853 2.8608 41 1 2.3056 -3.1234 3.5627 42 1 0.9202 -3.7775 2.5360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:05 Heat of formation + Delta-G solvation = -17.992079 kcal Electronic energy + Delta-G solvation = -21198.650856 eV Core-core repulsion = 18178.885643 eV Total energy + Delta-G solvation = -3019.765213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48926 -39.53822 -37.93563 -35.32672 -34.12086 -33.65152 -32.10955 -30.00773 -27.47445 -25.78833 -24.58847 -24.04216 -23.09228 -22.08759 -20.81412 -19.66087 -18.47362 -18.07318 -17.98110 -16.77880 -16.52570 -16.00705 -15.81050 -15.38160 -15.10550 -14.69476 -14.65775 -14.40638 -14.09511 -13.96393 -13.89198 -13.24612 -13.13508 -12.81598 -12.73772 -12.61813 -12.31154 -12.18180 -12.01073 -11.83072 -11.62888 -11.57963 -11.45737 -11.33254 -10.96393 -10.62423 -10.54606 -9.57206 -8.94468 -8.18470 -6.26509 1.41287 1.44000 1.51889 1.67993 1.98180 2.42471 2.96305 3.14821 3.24837 3.60592 3.87646 3.92434 4.00461 4.01620 4.05586 4.10151 4.18301 4.28081 4.31661 4.38777 4.56262 4.63525 4.65504 4.85952 4.92077 4.94297 4.97655 5.06778 5.10285 5.14414 5.17759 5.18758 5.25373 5.34030 5.47392 5.62950 5.68829 6.02513 6.29832 6.36639 6.61122 6.87130 7.30560 7.42111 8.92033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.004668 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.655887 B = 5996.704586 C = 6283.635538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.214 3.786 10 N -0.508 5.508 11 C 0.035 3.965 12 C 0.520 3.480 13 O -0.556 6.556 14 N -0.616 5.616 15 C 0.098 3.902 16 C -0.134 4.134 17 C -0.115 4.115 18 C -0.130 4.130 19 C 0.109 3.891 20 C 0.043 3.957 21 C -0.165 4.165 22 C -0.206 4.206 23 H 0.265 0.735 24 H 0.006 0.994 25 H -0.016 1.016 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -20.666 -0.088 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.088 3.912 10 N -0.231 5.231 11 C -0.097 4.097 12 C 0.308 3.692 13 O -0.433 6.433 14 N -0.351 5.351 15 C -0.024 4.024 16 C -0.172 4.172 17 C -0.152 4.152 18 C -0.168 4.168 19 C -0.013 4.013 20 C -0.066 4.066 21 C -0.202 4.202 22 C -0.245 4.245 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.002 0.998 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.489 -20.331 -0.479 20.343 hybrid contribution -0.350 1.165 0.445 1.295 sum 0.139 -19.166 -0.034 19.167 Atomic orbital electron populations 1.70042 1.07343 1.27860 1.51824 1.25751 0.95713 1.02606 0.94840 0.85536 0.78288 0.78497 0.78888 1.19816 1.20454 1.19534 1.21303 0.93281 0.91195 1.50013 0.92970 1.19427 0.89583 0.87931 0.94218 1.61669 1.31040 1.01412 1.29004 1.22065 0.95039 0.90092 1.02473 1.20589 0.89586 0.83302 0.75712 1.90649 1.19794 1.81421 1.51476 1.48233 1.08699 1.07100 1.71054 1.22102 0.79591 1.01167 0.99514 1.22004 1.01115 0.97748 0.96339 1.21507 0.93217 0.97232 1.03241 1.21887 0.98610 1.00231 0.96110 1.21645 0.92067 0.89202 0.98395 1.22331 0.99190 1.00258 0.84866 1.23243 1.02227 0.91825 1.02926 1.23294 0.97623 1.02861 1.00770 0.92657 0.97610 0.99797 0.91110 0.88370 0.89125 0.89985 0.92928 0.88481 0.90530 0.90304 0.93420 0.88997 0.91605 0.89868 0.88621 0.89085 0.87770 0.88087 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.52 -30.36 8.68 25.60 0.22 -30.13 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.21 11.48 4.62 85.56 0.39 11.88 16 10 N -0.51 -23.66 4.36 -880.08 -3.84 -27.49 16 11 C 0.03 1.27 3.34 85.56 0.29 1.55 16 12 C 0.52 18.09 5.56 87.66 0.49 18.58 16 13 O -0.56 -23.86 14.48 -3.04 -0.04 -23.91 16 14 N -0.62 -15.58 2.97 -818.14 -2.43 -18.01 16 15 C 0.10 1.77 6.37 86.51 0.55 2.33 16 16 C -0.13 -1.96 6.10 30.82 0.19 -1.78 16 17 C -0.11 -1.44 5.88 30.62 0.18 -1.26 16 18 C -0.13 -2.15 6.08 30.66 0.19 -1.96 16 19 C 0.11 2.35 6.43 86.35 0.55 2.90 16 20 C 0.04 1.85 4.86 44.92 0.22 2.07 16 21 C -0.16 -5.68 8.37 30.62 0.26 -5.42 16 22 C -0.21 -7.70 9.27 30.62 0.28 -7.41 16 23 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 24 H 0.01 0.33 7.88 -2.39 -0.02 0.31 16 25 H -0.02 -0.88 6.96 -2.39 -0.02 -0.90 16 26 H 0.07 2.35 5.89 -2.38 -0.01 2.33 16 27 H 0.10 3.46 7.38 -2.39 -0.02 3.45 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.56 5.93 -2.39 -0.01 1.55 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.78 7.01 -2.39 -0.02 1.76 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 4.46 8.14 -2.39 -0.02 4.44 16 39 H 0.09 2.98 4.83 -2.38 -0.01 2.96 16 40 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.08 3.14 7.13 -2.39 -0.02 3.12 16 Total: -1.00 -70.63 325.58 1.26 -69.36 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.99 Total: 15.65 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.27 Total: -7.67 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -5.98 Total: -100.84 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.63 1.26 -69.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.371 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds