Wall clock time and date at job start Mon Mar 30 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47138 * 269.99979 * 3 2 1 5 5 H 1.48499 * 109.47106 * 29.99996 * 3 2 1 6 6 H 1.48495 * 109.46893 * 150.00197 * 3 2 1 7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46661 * 184.57234 * 9 7 2 11 11 C 1.46850 * 111.00349 * 300.16105 * 10 9 7 12 12 C 1.53036 * 109.52208 * 185.84067 * 11 10 9 13 13 C 1.53120 * 109.28125 * 300.81916 * 12 11 10 14 14 C 1.53118 * 109.15853 * 57.65922 * 13 12 11 15 15 H 1.08996 * 109.54003 * 62.30191 * 14 13 12 16 16 C 1.50696 * 109.50184 * 182.40737 * 14 13 12 17 17 O 1.21276 * 120.00413 * 109.72915 * 16 14 13 18 18 N 1.34778 * 119.99888 * 289.72786 * 16 14 13 19 19 C 1.47022 * 125.64653 * 355.36492 * 18 16 14 20 20 C 1.54317 * 107.27715 * 180.97117 * 19 18 16 21 21 C 1.55154 * 102.86052 * 22.52529 * 20 19 18 22 22 C 1.47425 * 125.65042 * 175.67712 * 18 16 14 23 23 C 1.46854 * 111.00140 * 64.37394 * 10 9 7 24 24 H 0.97000 * 119.99728 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47143 * 64.57156 * 9 7 2 26 26 H 1.08995 * 109.46851 * 304.57236 * 9 7 2 27 27 H 1.08997 * 109.46145 * 305.85857 * 11 10 9 28 28 H 1.09001 * 109.45919 * 65.82686 * 11 10 9 29 29 H 1.09005 * 109.49839 * 180.87521 * 12 11 10 30 30 H 1.08998 * 109.53536 * 60.78743 * 12 11 10 31 31 H 1.08998 * 109.52269 * 297.75305 * 13 12 11 32 32 H 1.09005 * 109.57337 * 177.59312 * 13 12 11 33 33 H 1.09003 * 109.88268 * 300.51531 * 19 18 16 34 34 H 1.09002 * 109.88531 * 61.67703 * 19 18 16 35 35 H 1.09000 * 110.92327 * 264.11010 * 20 19 18 36 36 H 1.09000 * 110.59258 * 140.78436 * 20 19 18 37 37 H 1.09001 * 111.00146 * 206.23224 * 21 20 19 38 38 H 1.08997 * 111.01009 * 82.38318 * 21 20 19 39 39 H 1.09001 * 110.36054 * 274.67050 * 22 18 16 40 40 H 1.08999 * 110.36990 * 36.98924 * 22 18 16 41 41 H 1.08995 * 109.45929 * 294.16984 * 23 10 9 42 42 H 1.08998 * 109.46093 * 54.15354 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2017 -3.6135 0.1093 11 6 3.1466 -3.6118 -1.0148 12 6 4.0248 -4.8633 -0.9466 13 6 4.7843 -4.8762 0.3829 14 6 3.7787 -4.8287 1.5366 15 1 3.1476 -5.7169 1.5069 16 6 4.5195 -4.7814 2.8481 17 8 4.5123 -3.7667 3.5124 18 7 5.1900 -5.8667 3.2829 19 6 5.2031 -7.1841 2.6302 20 6 6.0798 -8.1148 3.4941 21 6 6.0430 -7.4302 4.8860 22 6 6.0265 -5.9313 4.4951 23 6 2.9076 -3.5782 1.3965 24 1 -0.4850 0.8401 0.0004 25 1 0.6867 -2.5930 -0.9284 26 1 0.5645 -2.5224 0.8459 27 1 2.5937 -3.6069 -1.9541 28 1 3.7756 -2.7234 -0.9591 29 1 4.7364 -4.8539 -1.7722 30 1 3.3982 -5.7525 -1.0164 31 1 5.4407 -4.0076 0.4359 32 1 5.3788 -5.7870 0.4551 33 1 4.1885 -7.5780 2.5700 34 1 5.6296 -7.0985 1.6308 35 1 7.0995 -8.1553 3.1110 36 1 5.6455 -9.1133 3.5439 37 1 6.9343 -7.6732 5.4645 38 1 5.1392 -7.7017 5.4313 39 1 7.0368 -5.5848 4.2775 40 1 5.5840 -5.3358 5.2936 41 1 3.5377 -2.6899 1.4408 42 1 2.1810 -3.5490 2.2085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049752391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:25 Heat of formation + Delta-G solvation = -64.621201 kcal Electronic energy + Delta-G solvation = -21113.246485 eV Core-core repulsion = 18091.459282 eV Total energy + Delta-G solvation = -3021.787203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46203 -39.50199 -38.23489 -35.58093 -33.91534 -32.60845 -31.71682 -29.89554 -28.74472 -25.86144 -25.65202 -23.59250 -23.10183 -22.01573 -20.89166 -20.08044 -18.54344 -18.11213 -17.47896 -17.02492 -16.35795 -15.93619 -15.83024 -15.56390 -15.05245 -14.67474 -14.45719 -14.36551 -14.14965 -13.79501 -13.71905 -13.37950 -13.18953 -13.02857 -12.92095 -12.41603 -12.36628 -12.23234 -12.11757 -12.08600 -11.83599 -11.76841 -11.65743 -11.47736 -11.13545 -10.74424 -10.63424 -9.66095 -9.09297 -8.19841 -6.38985 1.30425 1.32593 1.43129 1.54301 1.94778 2.33337 3.04693 3.25289 3.53120 3.70548 3.74156 3.85312 3.99614 4.09383 4.23823 4.28283 4.35541 4.45792 4.52415 4.59918 4.70749 4.84442 4.87450 4.88674 4.95503 4.97232 5.00630 5.10247 5.13185 5.15960 5.18956 5.26651 5.29745 5.33970 5.44131 5.46619 5.70060 6.01148 6.19255 6.44330 6.50244 6.80778 7.11445 7.31966 8.82818 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004725 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.650163 B = 5923.913161 C = 6401.674640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.199 3.801 10 N -0.533 5.533 11 C 0.055 3.945 12 C -0.101 4.101 13 C -0.100 4.100 14 C -0.087 4.087 15 H 0.118 0.882 16 C 0.529 3.471 17 O -0.592 6.592 18 N -0.619 5.619 19 C 0.084 3.916 20 C -0.122 4.122 21 C -0.124 4.124 22 C 0.091 3.909 23 C 0.093 3.907 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.002 0.998 27 H 0.065 0.935 28 H 0.011 0.989 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.008 0.992 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.736 -20.669 3.912 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.598 4.598 8 H 0.068 0.932 9 C 0.072 3.928 10 N -0.257 5.257 11 C -0.074 4.074 12 C -0.139 4.139 13 C -0.138 4.138 14 C -0.109 4.109 15 H 0.136 0.864 16 C 0.318 3.682 17 O -0.472 6.472 18 N -0.353 5.353 19 C -0.037 4.037 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.031 4.031 23 C -0.036 4.036 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.020 0.980 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.265 -20.415 4.200 25.257 hybrid contribution 0.207 2.527 0.317 2.555 sum 14.472 -17.888 4.517 23.448 Atomic orbital electron populations 1.70052 1.07387 1.27911 1.51030 1.25789 0.95679 1.02749 0.94456 0.85610 0.78425 0.79299 0.78727 1.19019 1.20243 1.20237 1.21968 0.93148 0.93300 1.51361 0.93210 1.19417 0.91199 0.86692 0.95450 1.62396 1.17343 1.44179 1.01741 1.22050 0.94080 0.97358 0.93885 1.21579 0.98049 0.97433 0.96818 1.21554 0.96332 1.02874 0.92996 1.21238 0.97343 1.00355 0.91925 0.86366 1.20671 0.78369 0.81790 0.87335 1.90691 1.63799 1.33401 1.59358 1.48614 1.48072 1.11465 1.27131 1.22506 1.02021 0.81220 0.97943 1.22673 1.00881 0.98860 0.93504 1.22774 1.04047 0.91301 0.98056 1.22423 0.94535 0.99359 0.86760 1.21425 0.95122 0.95226 0.91805 0.92483 0.96842 0.97998 0.91695 0.97039 0.88919 0.89462 0.93887 0.87696 0.90383 0.89499 0.89066 0.87727 0.87627 0.90727 0.91097 0.92887 0.97387 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.95 46.87 29.54 68.60 2.03 48.89 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.56 -33.34 7.73 25.60 0.20 -33.14 16 8 H 0.05 2.99 5.85 -2.91 -0.02 2.97 16 9 C 0.20 11.17 5.12 85.56 0.44 11.61 16 10 N -0.53 -24.25 4.86 -900.90 -4.38 -28.63 16 11 C 0.05 2.12 5.04 86.32 0.44 2.56 16 12 C -0.10 -2.66 6.09 30.65 0.19 -2.48 16 13 C -0.10 -2.62 5.18 30.67 0.16 -2.46 16 14 C -0.09 -2.81 2.07 -11.49 -0.02 -2.83 16 15 H 0.12 3.27 7.91 -2.39 -0.02 3.25 16 16 C 0.53 18.03 7.09 87.66 0.62 18.66 16 17 O -0.59 -26.68 16.20 -3.02 -0.05 -26.73 16 18 N -0.62 -14.83 3.33 -811.81 -2.70 -17.53 16 19 C 0.08 1.18 6.16 86.73 0.53 1.71 16 20 C -0.12 -0.98 6.95 31.78 0.22 -0.76 16 21 C -0.12 -1.37 7.08 31.98 0.23 -1.15 16 22 C 0.09 1.85 6.93 86.85 0.60 2.46 16 23 C 0.09 4.20 3.76 86.33 0.32 4.52 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.00 0.11 8.09 -2.39 -0.02 0.09 16 27 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 28 H 0.01 0.50 6.58 -2.39 -0.02 0.49 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.88 5.76 -2.38 -0.01 1.86 16 33 H 0.08 1.01 8.09 -2.39 -0.02 1.00 16 34 H 0.09 0.99 5.99 -2.39 -0.01 0.98 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.33 8.00 -2.39 -0.02 1.31 16 41 H 0.01 0.41 6.84 -2.39 -0.02 0.39 16 42 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16 Total: -1.00 -77.49 324.09 0.55 -76.93 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 0.98 Total: 4.33 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.38 Total: -0.08 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -6.79 Total: -103.34 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.49 0.55 -76.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.313 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds