Wall clock time and date at job start Mon Mar 30 2020 05:23:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00131 * 2 1
4 4 H 1.48498 * 109.47138 * 269.99979 * 3 2 1
5 5 H 1.48499 * 109.47106 * 29.99996 * 3 2 1
6 6 H 1.48495 * 109.46893 * 150.00197 * 3 2 1
7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99907 * 180.02562 * 7 2 1
9 9 C 1.50709 * 119.99821 * 359.97438 * 7 2 1
10 10 N 1.46897 * 109.46661 * 184.57234 * 9 7 2
11 11 C 1.46850 * 111.00349 * 300.16105 * 10 9 7
12 12 C 1.53036 * 109.52208 * 185.84067 * 11 10 9
13 13 C 1.53120 * 109.28125 * 300.81916 * 12 11 10
14 14 C 1.53118 * 109.15853 * 57.65922 * 13 12 11
15 15 H 1.08996 * 109.54003 * 62.30191 * 14 13 12
16 16 C 1.50696 * 109.50184 * 182.40737 * 14 13 12
17 17 O 1.21276 * 120.00413 * 109.72915 * 16 14 13
18 18 N 1.34778 * 119.99888 * 289.72786 * 16 14 13
19 19 C 1.47022 * 125.64653 * 355.36492 * 18 16 14
20 20 C 1.54317 * 107.27715 * 180.97117 * 19 18 16
21 21 C 1.55154 * 102.86052 * 22.52529 * 20 19 18
22 22 C 1.47425 * 125.65042 * 175.67712 * 18 16 14
23 23 C 1.46854 * 111.00140 * 64.37394 * 10 9 7
24 24 H 0.97000 * 119.99728 * 359.97438 * 1 2 3
25 25 H 1.09001 * 109.47143 * 64.57156 * 9 7 2
26 26 H 1.08995 * 109.46851 * 304.57236 * 9 7 2
27 27 H 1.08997 * 109.46145 * 305.85857 * 11 10 9
28 28 H 1.09001 * 109.45919 * 65.82686 * 11 10 9
29 29 H 1.09005 * 109.49839 * 180.87521 * 12 11 10
30 30 H 1.08998 * 109.53536 * 60.78743 * 12 11 10
31 31 H 1.08998 * 109.52269 * 297.75305 * 13 12 11
32 32 H 1.09005 * 109.57337 * 177.59312 * 13 12 11
33 33 H 1.09003 * 109.88268 * 300.51531 * 19 18 16
34 34 H 1.09002 * 109.88531 * 61.67703 * 19 18 16
35 35 H 1.09000 * 110.92327 * 264.11010 * 20 19 18
36 36 H 1.09000 * 110.59258 * 140.78436 * 20 19 18
37 37 H 1.09001 * 111.00146 * 206.23224 * 21 20 19
38 38 H 1.08997 * 111.01009 * 82.38318 * 21 20 19
39 39 H 1.09001 * 110.36054 * 274.67050 * 22 18 16
40 40 H 1.08999 * 110.36990 * 36.98924 * 22 18 16
41 41 H 1.08995 * 109.45929 * 294.16984 * 23 10 9
42 42 H 1.08998 * 109.46093 * 54.15354 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1941 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 7 2.2017 -3.6135 0.1093
11 6 3.1466 -3.6118 -1.0148
12 6 4.0248 -4.8633 -0.9466
13 6 4.7843 -4.8762 0.3829
14 6 3.7787 -4.8287 1.5366
15 1 3.1476 -5.7169 1.5069
16 6 4.5195 -4.7814 2.8481
17 8 4.5123 -3.7667 3.5124
18 7 5.1900 -5.8667 3.2829
19 6 5.2031 -7.1841 2.6302
20 6 6.0798 -8.1148 3.4941
21 6 6.0430 -7.4302 4.8860
22 6 6.0265 -5.9313 4.4951
23 6 2.9076 -3.5782 1.3965
24 1 -0.4850 0.8401 0.0004
25 1 0.6867 -2.5930 -0.9284
26 1 0.5645 -2.5224 0.8459
27 1 2.5937 -3.6069 -1.9541
28 1 3.7756 -2.7234 -0.9591
29 1 4.7364 -4.8539 -1.7722
30 1 3.3982 -5.7525 -1.0164
31 1 5.4407 -4.0076 0.4359
32 1 5.3788 -5.7870 0.4551
33 1 4.1885 -7.5780 2.5700
34 1 5.6296 -7.0985 1.6308
35 1 7.0995 -8.1553 3.1110
36 1 5.6455 -9.1133 3.5439
37 1 6.9343 -7.6732 5.4645
38 1 5.1392 -7.7017 5.4313
39 1 7.0368 -5.5848 4.2775
40 1 5.5840 -5.3358 5.2936
41 1 3.5377 -2.6899 1.4408
42 1 2.1810 -3.5490 2.2085
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000049752391.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:25
Heat of formation + Delta-G solvation = -64.621201 kcal
Electronic energy + Delta-G solvation = -21113.246485 eV
Core-core repulsion = 18091.459282 eV
Total energy + Delta-G solvation = -3021.787203 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.46203 -39.50199 -38.23489 -35.58093 -33.91534 -32.60845 -31.71682 -29.89554
-28.74472 -25.86144 -25.65202 -23.59250 -23.10183 -22.01573 -20.89166 -20.08044
-18.54344 -18.11213 -17.47896 -17.02492 -16.35795 -15.93619 -15.83024 -15.56390
-15.05245 -14.67474 -14.45719 -14.36551 -14.14965 -13.79501 -13.71905 -13.37950
-13.18953 -13.02857 -12.92095 -12.41603 -12.36628 -12.23234 -12.11757 -12.08600
-11.83599 -11.76841 -11.65743 -11.47736 -11.13545 -10.74424 -10.63424 -9.66095
-9.09297 -8.19841 -6.38985 1.30425 1.32593 1.43129 1.54301 1.94778
2.33337 3.04693 3.25289 3.53120 3.70548 3.74156 3.85312 3.99614
4.09383 4.23823 4.28283 4.35541 4.45792 4.52415 4.59918 4.70749
4.84442 4.87450 4.88674 4.95503 4.97232 5.00630 5.10247 5.13185
5.15960 5.18956 5.26651 5.29745 5.33970 5.44131 5.46619 5.70060
6.01148 6.19255 6.44330 6.50244 6.80778 7.11445 7.31966 8.82818
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.028372 B = 0.004725 C = 0.004373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.650163 B = 5923.913161 C = 6401.674640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C 0.013 3.987
3 Si 0.955 3.045
4 H -0.265 1.265
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.559 4.559
8 H 0.050 0.950
9 C 0.199 3.801
10 N -0.533 5.533
11 C 0.055 3.945
12 C -0.101 4.101
13 C -0.100 4.100
14 C -0.087 4.087
15 H 0.118 0.882
16 C 0.529 3.471
17 O -0.592 6.592
18 N -0.619 5.619
19 C 0.084 3.916
20 C -0.122 4.122
21 C -0.124 4.124
22 C 0.091 3.909
23 C 0.093 3.907
24 H 0.266 0.734
25 H 0.013 0.987
26 H 0.002 0.998
27 H 0.065 0.935
28 H 0.011 0.989
29 H 0.092 0.908
30 H 0.087 0.913
31 H 0.042 0.958
32 H 0.105 0.895
33 H 0.078 0.922
34 H 0.087 0.913
35 H 0.091 0.909
36 H 0.104 0.896
37 H 0.105 0.895
38 H 0.074 0.926
39 H 0.071 0.929
40 H 0.053 0.947
41 H 0.008 0.992
42 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.736 -20.669 3.912 25.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.187 4.187
3 Si 0.779 3.221
4 H -0.190 1.190
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.598 4.598
8 H 0.068 0.932
9 C 0.072 3.928
10 N -0.257 5.257
11 C -0.074 4.074
12 C -0.139 4.139
13 C -0.138 4.138
14 C -0.109 4.109
15 H 0.136 0.864
16 C 0.318 3.682
17 O -0.472 6.472
18 N -0.353 5.353
19 C -0.037 4.037
20 C -0.159 4.159
21 C -0.162 4.162
22 C -0.031 4.031
23 C -0.036 4.036
24 H 0.075 0.925
25 H 0.032 0.968
26 H 0.020 0.980
27 H 0.083 0.917
28 H 0.030 0.970
29 H 0.111 0.889
30 H 0.105 0.895
31 H 0.061 0.939
32 H 0.123 0.877
33 H 0.096 0.904
34 H 0.105 0.895
35 H 0.109 0.891
36 H 0.123 0.877
37 H 0.124 0.876
38 H 0.093 0.907
39 H 0.089 0.911
40 H 0.071 0.929
41 H 0.026 0.974
42 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 14.265 -20.415 4.200 25.257
hybrid contribution 0.207 2.527 0.317 2.555
sum 14.472 -17.888 4.517 23.448
Atomic orbital electron populations
1.70052 1.07387 1.27911 1.51030 1.25789 0.95679 1.02749 0.94456
0.85610 0.78425 0.79299 0.78727 1.19019 1.20243 1.20237 1.21968
0.93148 0.93300 1.51361 0.93210 1.19417 0.91199 0.86692 0.95450
1.62396 1.17343 1.44179 1.01741 1.22050 0.94080 0.97358 0.93885
1.21579 0.98049 0.97433 0.96818 1.21554 0.96332 1.02874 0.92996
1.21238 0.97343 1.00355 0.91925 0.86366 1.20671 0.78369 0.81790
0.87335 1.90691 1.63799 1.33401 1.59358 1.48614 1.48072 1.11465
1.27131 1.22506 1.02021 0.81220 0.97943 1.22673 1.00881 0.98860
0.93504 1.22774 1.04047 0.91301 0.98056 1.22423 0.94535 0.99359
0.86760 1.21425 0.95122 0.95226 0.91805 0.92483 0.96842 0.97998
0.91695 0.97039 0.88919 0.89462 0.93887 0.87696 0.90383 0.89499
0.89066 0.87727 0.87627 0.90727 0.91097 0.92887 0.97387 0.94193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.47 13.29 21.45 0.28 -57.18 16
2 C 0.01 0.76 5.46 84.65 0.46 1.22 16
3 Si 0.95 46.87 29.54 68.60 2.03 48.89 16
4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16
5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16
7 C -0.56 -33.34 7.73 25.60 0.20 -33.14 16
8 H 0.05 2.99 5.85 -2.91 -0.02 2.97 16
9 C 0.20 11.17 5.12 85.56 0.44 11.61 16
10 N -0.53 -24.25 4.86 -900.90 -4.38 -28.63 16
11 C 0.05 2.12 5.04 86.32 0.44 2.56 16
12 C -0.10 -2.66 6.09 30.65 0.19 -2.48 16
13 C -0.10 -2.62 5.18 30.67 0.16 -2.46 16
14 C -0.09 -2.81 2.07 -11.49 -0.02 -2.83 16
15 H 0.12 3.27 7.91 -2.39 -0.02 3.25 16
16 C 0.53 18.03 7.09 87.66 0.62 18.66 16
17 O -0.59 -26.68 16.20 -3.02 -0.05 -26.73 16
18 N -0.62 -14.83 3.33 -811.81 -2.70 -17.53 16
19 C 0.08 1.18 6.16 86.73 0.53 1.71 16
20 C -0.12 -0.98 6.95 31.78 0.22 -0.76 16
21 C -0.12 -1.37 7.08 31.98 0.23 -1.15 16
22 C 0.09 1.85 6.93 86.85 0.60 2.46 16
23 C 0.09 4.20 3.76 86.33 0.32 4.52 16
24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
25 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16
26 H 0.00 0.11 8.09 -2.39 -0.02 0.09 16
27 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16
28 H 0.01 0.50 6.58 -2.39 -0.02 0.49 16
29 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16
30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.10 1.88 5.76 -2.38 -0.01 1.86 16
33 H 0.08 1.01 8.09 -2.39 -0.02 1.00 16
34 H 0.09 0.99 5.99 -2.39 -0.01 0.98 16
35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16
36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.05 1.33 8.00 -2.39 -0.02 1.31 16
41 H 0.01 0.41 6.84 -2.39 -0.02 0.39 16
42 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16
Total: -1.00 -77.49 324.09 0.55 -76.93
By element:
Atomic # 1 Polarization: 3.34 SS G_CDS: 0.98 Total: 4.33 kcal
Atomic # 6 Polarization: -4.46 SS G_CDS: 4.38 Total: -0.08 kcal
Atomic # 7 Polarization: -96.55 SS G_CDS: -6.79 Total: -103.34 kcal
Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal
Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal
Total: -77.49 0.55 -76.93 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049752391.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.313 kcal
(2) G-P(sol) polarization free energy of solvation -77.487 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds