Wall clock time and date at job start Mon Mar 30 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48498 * 109.47465 * 270.00193 * 3 2 1 5 5 H 1.48511 * 109.46945 * 29.99979 * 3 2 1 6 6 H 1.48495 * 109.47342 * 149.99428 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99889 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00294 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.46848 * 110.99925 * 294.21062 * 10 9 7 12 12 C 1.53042 * 109.51998 * 174.16289 * 11 10 9 13 13 C 1.53116 * 109.28175 * 59.18223 * 12 11 10 14 14 C 1.53127 * 109.15688 * 302.34258 * 13 12 11 15 15 H 1.08999 * 109.53798 * 297.69350 * 14 13 12 16 16 C 1.50699 * 109.49957 * 177.59470 * 14 13 12 17 17 O 1.21286 * 119.99986 * 240.19960 * 16 14 13 18 18 N 1.34775 * 120.00328 * 60.20044 * 16 14 13 19 19 C 1.47018 * 125.65103 * 179.97438 * 18 16 14 20 20 C 1.54325 * 107.40412 * 180.94532 * 19 18 16 21 21 C 1.55552 * 102.75696 * 22.23822 * 20 19 18 22 22 C 1.47430 * 125.64364 * 359.95398 * 18 16 14 23 23 C 1.46847 * 110.99789 * 170.00509 * 10 9 7 24 24 H 0.97000 * 119.99755 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47075 * 60.00332 * 9 7 2 26 26 H 1.09003 * 109.47170 * 300.00282 * 9 7 2 27 27 H 1.08999 * 109.46500 * 294.17624 * 11 10 9 28 28 H 1.08997 * 109.46192 * 54.15537 * 11 10 9 29 29 H 1.09002 * 109.50157 * 179.12198 * 12 11 10 30 30 H 1.08999 * 109.50135 * 299.23421 * 12 11 10 31 31 H 1.08999 * 109.52589 * 182.43829 * 13 12 11 32 32 H 1.09002 * 109.52476 * 62.24822 * 13 12 11 33 33 H 1.09002 * 109.88241 * 300.44061 * 19 18 16 34 34 H 1.09000 * 109.88049 * 61.45190 * 19 18 16 35 35 H 1.08993 * 110.72531 * 140.63023 * 20 19 18 36 36 H 1.09000 * 110.72094 * 263.91129 * 20 19 18 37 37 H 1.08997 * 110.96565 * 206.40316 * 21 20 19 38 38 H 1.08994 * 111.06112 * 82.57655 * 21 20 19 39 39 H 1.08997 * 110.36526 * 274.74791 * 22 18 16 40 40 H 1.08992 * 110.36633 * 36.96256 * 22 18 16 41 41 H 1.08992 * 109.46644 * 65.81990 * 23 10 9 42 42 H 1.09000 * 109.46309 * 305.85065 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.6460 -3.2629 1.2511 12 6 4.0417 -4.7383 1.1571 13 6 5.5487 -4.8427 0.9069 14 6 5.8991 -4.0815 -0.3748 15 1 5.3899 -4.5406 -1.2222 16 6 7.3889 -4.1293 -0.5969 17 8 8.0288 -3.1000 -0.6404 18 7 8.0101 -5.3159 -0.7472 19 6 9.4508 -5.5067 -0.9697 20 6 9.6999 -7.0236 -1.1058 21 6 8.3017 -7.5656 -1.5192 22 6 7.3575 -6.6375 -0.7153 23 6 5.4496 -2.6252 -0.2364 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 4.1749 -2.7973 2.0827 28 1 2.5713 -3.1850 1.4150 29 1 3.7922 -5.2422 2.0910 30 1 3.5027 -5.2080 0.3344 31 1 5.8279 -5.8904 0.7962 32 1 6.0886 -4.4078 1.7480 33 1 9.7553 -4.9975 -1.8840 34 1 10.0120 -5.1135 -0.1220 35 1 10.4386 -7.2251 -1.8815 36 1 10.0136 -7.4499 -0.1529 37 1 8.1806 -8.6050 -1.2144 38 1 8.1395 -7.4536 -2.5912 39 1 7.2639 -6.9896 0.3119 40 1 6.3774 -6.5880 -1.1895 41 1 5.9700 -2.1625 0.6021 42 1 5.6848 -2.0840 -1.1528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049752392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:29 Heat of formation + Delta-G solvation = -35.967123 kcal Electronic energy + Delta-G solvation = -20925.655683 eV Core-core repulsion = 17905.111014 eV Total energy + Delta-G solvation = -3020.544669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40942 -38.23008 -37.14917 -33.82628 -32.21706 -31.53698 -30.57129 -29.24239 -27.54969 -24.76366 -23.59476 -22.63795 -21.38633 -21.08303 -19.54760 -19.07308 -17.06969 -16.73898 -16.60936 -15.60372 -15.18099 -14.41587 -14.21705 -14.07253 -13.78037 -13.65876 -13.59040 -13.27992 -12.95653 -12.74511 -12.32355 -12.24263 -12.14785 -11.65388 -11.59265 -11.43965 -11.13390 -11.03707 -10.78220 -10.61470 -10.41723 -10.36290 -9.89573 -9.81159 -9.56245 -9.20033 -8.76982 -8.53422 -7.33588 -6.02608 -3.99633 2.67989 2.87190 3.32739 3.39732 3.44029 4.15422 4.24841 4.45903 4.56105 4.63237 4.83535 4.94119 4.99228 5.03040 5.16359 5.27664 5.30641 5.38383 5.43636 5.47680 5.53686 5.59483 5.64301 5.74064 5.81456 5.86499 6.07004 6.12506 6.14341 6.18067 6.26728 6.44754 6.64525 6.70246 6.93720 7.04484 7.40699 7.63284 7.93301 8.09175 8.20095 8.68722 9.05239 9.59713 11.10334 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036596 B = 0.004242 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.925234 B = 6599.802715 C = 7077.487327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.527 5.527 11 C 0.060 3.940 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.097 4.097 15 H 0.104 0.896 16 C 0.536 3.464 17 O -0.538 6.538 18 N -0.623 5.623 19 C 0.105 3.895 20 C -0.132 4.132 21 C -0.135 4.135 22 C 0.097 3.903 23 C 0.075 3.925 24 H 0.263 0.737 25 H -0.011 1.011 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.036 -17.212 -0.358 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.252 5.252 11 C -0.068 4.068 12 C -0.152 4.152 13 C -0.151 4.151 14 C -0.118 4.118 15 H 0.122 0.878 16 C 0.325 3.675 17 O -0.414 6.414 18 N -0.359 5.359 19 C -0.017 4.017 20 C -0.170 4.170 21 C -0.173 4.173 22 C -0.025 4.025 23 C -0.054 4.054 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.945 -16.666 -0.749 23.779 hybrid contribution 0.845 1.359 0.602 1.710 sum 17.790 -15.307 -0.147 23.469 Atomic orbital electron populations 1.69893 1.06095 1.26811 1.51232 1.24882 0.94728 0.98835 0.94841 0.86886 0.80360 0.84020 0.78681 1.20103 1.21220 1.19218 1.21028 0.88652 0.94711 1.50223 0.90063 1.20157 0.96995 0.83952 0.95244 1.61841 1.09939 1.19024 1.34361 1.22018 1.02377 0.92226 0.90208 1.21615 0.94205 0.97747 1.01651 1.21687 0.97982 0.99442 0.95980 1.21307 0.90110 0.99796 1.00618 0.87805 1.20620 0.90155 0.81498 0.75247 1.90697 1.67704 1.32667 1.50348 1.48535 1.08336 1.06049 1.72931 1.21880 0.82082 0.96205 1.01580 1.22711 0.97653 0.94221 1.02390 1.22871 0.94428 0.99251 1.00754 1.22450 0.97242 0.82456 1.00398 1.21772 0.89675 0.92725 1.01273 0.92697 0.99312 0.95689 0.96216 0.89064 0.91778 0.91003 0.91496 0.92177 0.91575 0.91670 0.90029 0.90574 0.89745 0.90436 0.91029 0.89984 0.95173 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.51 -14.57 8.98 -34.44 -0.31 -14.88 16 8 H 0.08 2.50 7.36 -52.49 -0.39 2.11 16 9 C 0.16 4.10 3.79 -4.98 -0.02 4.08 16 10 N -0.53 -11.32 4.65 -236.11 -1.10 -12.41 16 11 C 0.06 1.15 5.30 -3.83 -0.02 1.12 16 12 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 13 C -0.11 -1.46 5.06 -26.61 -0.13 -1.60 16 14 C -0.10 -1.46 2.03 -91.68 -0.19 -1.64 16 15 H 0.10 1.49 7.84 -51.93 -0.41 1.08 16 16 C 0.54 8.20 7.22 -10.99 -0.08 8.12 16 17 O -0.54 -10.33 16.31 5.55 0.09 -10.24 16 18 N -0.62 -7.21 3.32 -170.53 -0.57 -7.78 16 19 C 0.11 1.02 6.86 -3.07 -0.02 1.00 16 20 C -0.13 -0.81 6.98 -24.68 -0.17 -0.98 16 21 C -0.13 -0.79 7.09 -24.38 -0.17 -0.97 16 22 C 0.10 0.78 5.14 -2.54 -0.01 0.77 16 23 C 0.07 1.42 4.03 -3.83 -0.02 1.41 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 26 H 0.03 0.64 7.41 -51.93 -0.39 0.25 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 1.94 6.70 -51.93 -0.35 1.60 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.67 5.10 -51.93 -0.26 0.41 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 7.13 -51.93 -0.37 0.14 16 40 H 0.08 0.64 7.33 -51.93 -0.38 0.26 16 41 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.07 1.48 7.99 -51.93 -0.41 1.07 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -33.40 322.37 -9.16 -42.56 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -7.14 Total: -3.91 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.40 Total: -3.45 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.89 Total: -47.19 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.40 -9.16 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.592 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds