Wall clock time and date at job start Mon Mar 30 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48498 * 109.47465 * 270.00193 * 3 2 1 5 5 H 1.48511 * 109.46945 * 29.99979 * 3 2 1 6 6 H 1.48495 * 109.47342 * 149.99428 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99889 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00294 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.46848 * 110.99925 * 294.21062 * 10 9 7 12 12 C 1.53042 * 109.51998 * 174.16289 * 11 10 9 13 13 C 1.53116 * 109.28175 * 59.18223 * 12 11 10 14 14 C 1.53127 * 109.15688 * 302.34258 * 13 12 11 15 15 H 1.08999 * 109.53798 * 297.69350 * 14 13 12 16 16 C 1.50699 * 109.49957 * 177.59470 * 14 13 12 17 17 O 1.21286 * 119.99986 * 240.19960 * 16 14 13 18 18 N 1.34775 * 120.00328 * 60.20044 * 16 14 13 19 19 C 1.47018 * 125.65103 * 179.97438 * 18 16 14 20 20 C 1.54325 * 107.40412 * 180.94532 * 19 18 16 21 21 C 1.55552 * 102.75696 * 22.23822 * 20 19 18 22 22 C 1.47430 * 125.64364 * 359.95398 * 18 16 14 23 23 C 1.46847 * 110.99789 * 170.00509 * 10 9 7 24 24 H 0.97000 * 119.99755 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47075 * 60.00332 * 9 7 2 26 26 H 1.09003 * 109.47170 * 300.00282 * 9 7 2 27 27 H 1.08999 * 109.46500 * 294.17624 * 11 10 9 28 28 H 1.08997 * 109.46192 * 54.15537 * 11 10 9 29 29 H 1.09002 * 109.50157 * 179.12198 * 12 11 10 30 30 H 1.08999 * 109.50135 * 299.23421 * 12 11 10 31 31 H 1.08999 * 109.52589 * 182.43829 * 13 12 11 32 32 H 1.09002 * 109.52476 * 62.24822 * 13 12 11 33 33 H 1.09002 * 109.88241 * 300.44061 * 19 18 16 34 34 H 1.09000 * 109.88049 * 61.45190 * 19 18 16 35 35 H 1.08993 * 110.72531 * 140.63023 * 20 19 18 36 36 H 1.09000 * 110.72094 * 263.91129 * 20 19 18 37 37 H 1.08997 * 110.96565 * 206.40316 * 21 20 19 38 38 H 1.08994 * 111.06112 * 82.57655 * 21 20 19 39 39 H 1.08997 * 110.36526 * 274.74791 * 22 18 16 40 40 H 1.08992 * 110.36633 * 36.96256 * 22 18 16 41 41 H 1.08992 * 109.46644 * 65.81990 * 23 10 9 42 42 H 1.09000 * 109.46309 * 305.85065 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.6460 -3.2629 1.2511 12 6 4.0417 -4.7383 1.1571 13 6 5.5487 -4.8427 0.9069 14 6 5.8991 -4.0815 -0.3748 15 1 5.3899 -4.5406 -1.2222 16 6 7.3889 -4.1293 -0.5969 17 8 8.0288 -3.1000 -0.6404 18 7 8.0101 -5.3159 -0.7472 19 6 9.4508 -5.5067 -0.9697 20 6 9.6999 -7.0236 -1.1058 21 6 8.3017 -7.5656 -1.5192 22 6 7.3575 -6.6375 -0.7153 23 6 5.4496 -2.6252 -0.2364 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 4.1749 -2.7973 2.0827 28 1 2.5713 -3.1850 1.4150 29 1 3.7922 -5.2422 2.0910 30 1 3.5027 -5.2080 0.3344 31 1 5.8279 -5.8904 0.7962 32 1 6.0886 -4.4078 1.7480 33 1 9.7553 -4.9975 -1.8840 34 1 10.0120 -5.1135 -0.1220 35 1 10.4386 -7.2251 -1.8815 36 1 10.0136 -7.4499 -0.1529 37 1 8.1806 -8.6050 -1.2144 38 1 8.1395 -7.4536 -2.5912 39 1 7.2639 -6.9896 0.3119 40 1 6.3774 -6.5880 -1.1895 41 1 5.9700 -2.1625 0.6021 42 1 5.6848 -2.0840 -1.1528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049752392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:28 Heat of formation + Delta-G solvation = -59.565931 kcal Electronic energy + Delta-G solvation = -20926.679004 eV Core-core repulsion = 17905.111014 eV Total energy + Delta-G solvation = -3021.567990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51006 -39.49266 -38.25495 -35.54592 -34.08807 -32.62642 -31.79501 -30.07453 -29.38500 -25.92286 -25.18914 -23.73640 -22.83617 -21.96798 -20.89663 -20.17404 -18.94874 -18.13531 -17.46221 -16.91058 -16.45832 -16.22264 -15.74762 -15.41592 -14.95121 -14.89463 -14.49387 -14.44236 -14.33239 -14.07301 -13.85370 -13.55380 -13.28869 -13.10226 -12.75002 -12.47645 -12.44086 -12.17215 -12.06464 -11.95513 -11.89007 -11.71516 -11.57513 -11.40990 -11.19721 -10.81919 -10.73804 -9.69666 -9.10977 -8.30879 -6.33395 1.31789 1.32483 1.43565 1.52250 1.91613 2.31564 3.01300 3.11988 3.47885 3.67118 3.70513 3.80315 3.94588 4.08692 4.18971 4.23838 4.31370 4.35254 4.48389 4.62140 4.64174 4.69155 4.71389 4.77228 4.87445 4.91592 4.96268 4.98652 5.02866 5.05816 5.10383 5.14608 5.22448 5.34645 5.40335 5.42429 5.50853 5.95035 6.33443 6.43607 6.57919 6.71791 7.07587 7.30060 8.85142 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036596 B = 0.004242 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.925234 B = 6599.802715 C = 7077.487327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.512 4.512 8 H 0.047 0.953 9 C 0.170 3.830 10 N -0.535 5.535 11 C 0.056 3.944 12 C -0.104 4.104 13 C -0.103 4.103 14 C -0.089 4.089 15 H 0.115 0.885 16 C 0.532 3.468 17 O -0.590 6.590 18 N -0.617 5.617 19 C 0.095 3.905 20 C -0.121 4.121 21 C -0.127 4.127 22 C 0.084 3.916 23 C 0.078 3.922 24 H 0.268 0.732 25 H -0.019 1.019 26 H 0.022 0.978 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.015 0.985 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.788 -19.593 -0.235 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.043 3.957 10 N -0.259 5.259 11 C -0.071 4.071 12 C -0.141 4.141 13 C -0.141 4.141 14 C -0.110 4.110 15 H 0.133 0.867 16 C 0.321 3.679 17 O -0.471 6.471 18 N -0.350 5.350 19 C -0.027 4.027 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.037 4.037 23 C -0.051 4.051 24 H 0.077 0.923 25 H -0.001 1.001 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.710 -19.123 -0.629 26.761 hybrid contribution 0.284 2.005 0.556 2.100 sum 18.994 -17.117 -0.072 25.569 Atomic orbital electron populations 1.70018 1.07762 1.28085 1.52436 1.25721 0.95563 1.02671 0.94430 0.85831 0.79154 0.79408 0.79266 1.19031 1.20171 1.18562 1.21185 0.90427 0.93586 1.49870 0.93457 1.19929 0.94784 0.86436 0.94545 1.61794 1.11535 1.16765 1.35798 1.22083 1.00491 0.95558 0.89013 1.21566 0.95234 0.93880 1.03449 1.21676 0.96612 1.01416 0.94378 1.21194 0.90393 0.97026 1.02387 0.86673 1.20554 0.90028 0.82033 0.75243 1.90672 1.68550 1.34720 1.53115 1.48591 1.09474 1.06292 1.70692 1.22092 0.80871 0.99100 1.00628 1.22711 0.98388 0.90952 1.03783 1.22889 0.93173 1.00078 1.00362 1.22825 0.97908 0.80839 1.02145 1.21722 0.87788 0.95816 0.99765 0.92308 1.00107 0.96016 0.96672 0.92092 0.88874 0.90541 0.87394 0.92699 0.92813 0.92548 0.88519 0.89132 0.87014 0.90618 0.89120 0.89399 0.96681 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.94 46.02 27.47 68.60 1.88 47.90 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 7 C -0.51 -30.41 8.98 25.60 0.23 -30.18 16 8 H 0.05 3.06 7.36 -2.91 -0.02 3.04 16 9 C 0.17 8.79 3.79 85.56 0.32 9.12 16 10 N -0.53 -23.41 4.65 -900.92 -4.19 -27.59 16 11 C 0.06 2.18 5.30 86.33 0.46 2.64 16 12 C -0.10 -2.75 6.09 30.65 0.19 -2.56 16 13 C -0.10 -2.39 5.06 30.68 0.16 -2.23 16 14 C -0.09 -2.56 2.03 -11.48 -0.02 -2.58 16 15 H 0.12 3.08 7.84 -2.39 -0.02 3.06 16 16 C 0.53 15.91 7.22 87.66 0.63 16.54 16 17 O -0.59 -23.12 16.31 -3.05 -0.05 -23.17 16 18 N -0.62 -13.03 3.32 -811.84 -2.70 -15.72 16 19 C 0.10 1.70 6.86 86.73 0.59 2.30 16 20 C -0.12 -1.04 6.98 31.92 0.22 -0.82 16 21 C -0.13 -0.95 7.09 32.12 0.23 -0.72 16 22 C 0.08 1.02 5.14 86.85 0.45 1.46 16 23 C 0.08 3.02 4.03 86.33 0.35 3.37 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H -0.02 -0.99 7.18 -2.39 -0.02 -1.00 16 26 H 0.02 1.13 7.41 -2.39 -0.02 1.11 16 27 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 2.70 6.70 -2.39 -0.02 2.68 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 1.66 5.10 -2.39 -0.01 1.65 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.82 7.13 -2.39 -0.02 0.80 16 40 H 0.09 1.01 7.33 -2.39 -0.02 0.99 16 41 H 0.01 0.62 8.08 -2.39 -0.02 0.60 16 42 H 0.06 2.39 7.99 -2.39 -0.02 2.37 16 Total: -1.00 -76.13 322.37 0.44 -75.69 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 0.92 Total: 4.39 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 4.27 Total: -2.37 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -6.59 Total: -102.44 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Total: -76.13 0.44 -75.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds