Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99295 * 3 2 1 5 5 H 1.48495 * 109.47445 * 29.99323 * 3 2 1 6 6 H 1.48506 * 109.47418 * 149.99527 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47330 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99809 * 180.02562 * 12 11 10 14 14 O 1.21291 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00402 * 179.97438 * 13 12 11 16 16 H 1.09001 * 110.45049 * 337.31142 * 15 13 12 17 17 C 1.54575 * 110.40910 * 214.91584 * 15 13 12 18 18 H 1.09000 * 110.50553 * 122.36269 * 17 15 13 19 19 N 1.46908 * 110.39773 * 0.02562 * 17 15 13 20 20 C 1.55929 * 104.64605 * 241.20991 * 17 15 13 21 21 H 1.08996 * 115.91622 * 199.96519 * 20 17 15 22 22 C 1.55928 * 104.49575 * 70.27505 * 20 17 15 23 23 C 1.54577 * 104.64435 * 289.72161 * 22 20 17 24 24 C 1.55927 * 104.64625 * 0.02562 * 23 22 20 25 25 H 1.08997 * 116.52848 * 199.60644 * 24 23 22 26 26 C 1.56951 * 100.65033 * 326.21968 * 20 17 15 27 27 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47122 * 59.99327 * 9 7 2 29 29 H 1.09005 * 109.46995 * 299.99888 * 9 7 2 30 30 H 1.08999 * 109.47303 * 59.99769 * 10 9 7 31 31 H 1.09004 * 109.46827 * 299.99756 * 10 9 7 32 32 H 1.08999 * 109.47094 * 59.99668 * 11 10 9 33 33 H 1.08994 * 109.46903 * 299.99762 * 11 10 9 34 34 H 0.96994 * 120.00208 * 359.97438 * 12 11 10 35 35 H 1.00902 * 110.99930 * 64.77756 * 19 17 15 36 36 H 1.00902 * 110.99485 * 188.73146 * 19 17 15 37 37 H 1.08997 * 110.40099 * 48.51552 * 22 20 17 38 38 H 1.08998 * 110.39669 * 170.93165 * 22 20 17 39 39 H 1.09002 * 110.39977 * 241.21310 * 23 22 20 40 40 H 1.08999 * 110.50095 * 118.84145 * 23 22 20 41 41 H 1.09000 * 112.02382 * 170.30666 * 26 20 17 42 42 H 1.09000 * 112.02415 * 296.75638 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7906 -7.5929 0.0010 15 6 2.9623 -8.5167 0.0020 16 1 3.9260 -8.1940 -0.3920 17 6 2.4095 -9.6984 -0.8271 18 1 3.0997 -9.9574 -1.6300 19 7 1.0888 -9.3646 -1.3771 20 6 2.2937 -10.8741 0.1906 21 1 2.2483 -11.8743 -0.2401 22 6 1.1163 -10.4648 1.1274 23 6 1.6691 -9.2832 1.9565 24 6 3.1283 -9.0892 1.4422 25 1 3.8067 -8.5424 2.0971 26 6 3.5220 -10.5746 1.1207 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8532 -5.0451 -0.8885 33 1 0.8540 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0014 35 1 1.1538 -8.6044 -2.0374 36 1 0.6576 -10.1737 -1.7984 37 1 0.2557 -10.1465 0.5391 38 1 0.8452 -11.2938 1.7811 39 1 1.6698 -9.5312 3.0179 40 1 1.0809 -8.3832 1.7777 41 1 3.5211 -11.2004 2.0132 42 1 4.4677 -10.6406 0.5828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079866552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = -30.048720 kcal Electronic energy + Delta-G solvation = -20666.236811 eV Core-core repulsion = 17645.948783 eV Total energy + Delta-G solvation = -3020.288028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16145 -38.18738 -35.19140 -33.38781 -33.16632 -31.37897 -30.07131 -28.67836 -27.02418 -26.19069 -23.33270 -21.92572 -20.63529 -20.41859 -20.00756 -18.40204 -16.95918 -16.48442 -16.25301 -16.14353 -15.14149 -14.82941 -14.47123 -14.34260 -14.23371 -13.67967 -12.95750 -12.62296 -12.28586 -12.24253 -12.06994 -11.75670 -11.60549 -11.33446 -11.13421 -11.09637 -10.89380 -10.75034 -10.68319 -10.56999 -10.47086 -10.03782 -9.81165 -9.63353 -9.24818 -9.07972 -8.53662 -8.35906 -8.17979 -6.00527 -4.03523 3.01921 3.31360 3.37674 3.40455 3.58806 4.23323 4.32789 4.40417 4.45421 4.69941 4.89119 5.05262 5.14900 5.21217 5.26069 5.35155 5.41969 5.49724 5.53651 5.65413 5.74305 5.82387 5.84883 5.87773 5.94075 6.09720 6.23144 6.24151 6.41706 6.64340 6.65811 6.69741 6.93444 7.07469 7.20207 7.47390 7.65576 7.78901 7.95156 7.98704 8.39928 8.71460 9.03306 9.60541 11.10774 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045585 B = 0.003258 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.089306 B = 8591.103871 C = 8723.593087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.120 3.880 12 N -0.736 5.736 13 C 0.508 3.492 14 O -0.491 6.491 15 C -0.108 4.108 16 H 0.081 0.919 17 C 0.105 3.895 18 H 0.035 0.965 19 N -0.810 5.810 20 C -0.101 4.101 21 H 0.093 0.907 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.089 4.089 25 H 0.099 0.901 26 C -0.123 4.123 27 H 0.261 0.739 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.339 0.661 36 H 0.330 0.670 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 -22.608 -0.058 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.389 5.389 13 C 0.293 3.707 14 O -0.364 6.364 15 C -0.131 4.131 16 H 0.100 0.900 17 C -0.007 4.007 18 H 0.053 0.947 19 N -0.340 5.340 20 C -0.120 4.120 21 H 0.111 0.889 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.107 4.107 25 H 0.117 0.883 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.225 0.775 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.350 -22.449 0.682 23.340 hybrid contribution 1.501 0.894 -0.986 2.006 sum 7.851 -21.555 -0.304 22.942 Atomic orbital electron populations 1.69966 1.06054 1.26656 1.50613 1.25032 0.94855 0.99287 0.95313 0.86587 0.79814 0.83468 0.78077 1.20679 1.21206 1.19895 1.21216 0.92974 0.91002 1.50848 0.92698 1.19025 0.93866 0.90900 0.97587 1.21872 0.99697 0.93609 1.00659 1.21529 0.91894 0.85264 1.01597 1.46375 1.10311 1.06151 1.76020 1.20181 0.89881 0.83113 0.77510 1.90718 1.15917 1.83829 1.45944 1.22438 0.98060 0.94497 0.98063 0.90043 1.22137 0.90251 0.93435 0.94904 0.94737 1.58945 1.20946 1.11062 1.43090 1.23615 0.96367 0.96449 0.95578 0.88922 1.22433 0.98808 0.96287 0.96924 1.22829 0.94832 1.01056 0.98022 1.23444 0.97841 0.95512 0.93934 0.88257 1.23566 0.97393 0.95890 0.99283 0.92942 0.96354 0.96312 0.92899 0.92947 0.92123 0.92150 0.77455 0.84691 0.85765 0.88655 0.93588 0.93002 0.89199 0.90883 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 12 N -0.74 -10.52 5.56 -60.29 -0.33 -10.86 16 13 C 0.51 7.18 5.38 -10.99 -0.06 7.12 16 14 O -0.49 -8.41 11.43 5.55 0.06 -8.35 16 15 C -0.11 -1.17 3.10 -89.41 -0.28 -1.44 16 16 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 17 C 0.11 1.05 3.68 -65.32 -0.24 0.81 16 18 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 19 N -0.81 -9.00 4.89 -2.64 -0.01 -9.01 16 20 C -0.10 -0.92 5.01 -85.35 -0.43 -1.35 16 21 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.11 -1.19 5.85 -24.34 -0.14 -1.33 16 23 C -0.13 -1.57 5.80 -24.34 -0.14 -1.71 16 24 C -0.09 -0.89 4.92 -85.36 -0.42 -1.31 16 25 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 26 C -0.12 -1.03 6.42 -22.43 -0.14 -1.18 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.39 4.69 8.45 -40.82 -0.35 4.35 16 35 H 0.34 4.00 8.20 -39.29 -0.32 3.68 16 36 H 0.33 3.06 9.02 -39.29 -0.35 2.71 16 37 H 0.09 1.27 6.50 -51.93 -0.34 0.93 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.38 5.05 -51.93 -0.26 1.11 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -31.20 323.89 -9.33 -40.53 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.08 Total: 6.34 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.56 Total: -13.84 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.39 Total: -46.13 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.06 Total: -8.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.20 -9.33 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.485 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds