Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99295 * 3 2 1 5 5 H 1.48495 * 109.47445 * 29.99323 * 3 2 1 6 6 H 1.48506 * 109.47418 * 149.99527 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47330 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99809 * 180.02562 * 12 11 10 14 14 O 1.21291 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00402 * 179.97438 * 13 12 11 16 16 H 1.09001 * 110.45049 * 337.31142 * 15 13 12 17 17 C 1.54575 * 110.40910 * 214.91584 * 15 13 12 18 18 H 1.09000 * 110.50553 * 122.36269 * 17 15 13 19 19 N 1.46908 * 110.39773 * 0.02562 * 17 15 13 20 20 C 1.55929 * 104.64605 * 241.20991 * 17 15 13 21 21 H 1.08996 * 115.91622 * 199.96519 * 20 17 15 22 22 C 1.55928 * 104.49575 * 70.27505 * 20 17 15 23 23 C 1.54577 * 104.64435 * 289.72161 * 22 20 17 24 24 C 1.55927 * 104.64625 * 0.02562 * 23 22 20 25 25 H 1.08997 * 116.52848 * 199.60644 * 24 23 22 26 26 C 1.56951 * 100.65033 * 326.21968 * 20 17 15 27 27 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47122 * 59.99327 * 9 7 2 29 29 H 1.09005 * 109.46995 * 299.99888 * 9 7 2 30 30 H 1.08999 * 109.47303 * 59.99769 * 10 9 7 31 31 H 1.09004 * 109.46827 * 299.99756 * 10 9 7 32 32 H 1.08999 * 109.47094 * 59.99668 * 11 10 9 33 33 H 1.08994 * 109.46903 * 299.99762 * 11 10 9 34 34 H 0.96994 * 120.00208 * 359.97438 * 12 11 10 35 35 H 1.00902 * 110.99930 * 64.77756 * 19 17 15 36 36 H 1.00902 * 110.99485 * 188.73146 * 19 17 15 37 37 H 1.08997 * 110.40099 * 48.51552 * 22 20 17 38 38 H 1.08998 * 110.39669 * 170.93165 * 22 20 17 39 39 H 1.09002 * 110.39977 * 241.21310 * 23 22 20 40 40 H 1.08999 * 110.50095 * 118.84145 * 23 22 20 41 41 H 1.09000 * 112.02382 * 170.30666 * 26 20 17 42 42 H 1.09000 * 112.02415 * 296.75638 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7906 -7.5929 0.0010 15 6 2.9623 -8.5167 0.0020 16 1 3.9260 -8.1940 -0.3920 17 6 2.4095 -9.6984 -0.8271 18 1 3.0997 -9.9574 -1.6300 19 7 1.0888 -9.3646 -1.3771 20 6 2.2937 -10.8741 0.1906 21 1 2.2483 -11.8743 -0.2401 22 6 1.1163 -10.4648 1.1274 23 6 1.6691 -9.2832 1.9565 24 6 3.1283 -9.0892 1.4422 25 1 3.8067 -8.5424 2.0971 26 6 3.5220 -10.5746 1.1207 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8532 -5.0451 -0.8885 33 1 0.8540 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0014 35 1 1.1538 -8.6044 -2.0374 36 1 0.6576 -10.1737 -1.7984 37 1 0.2557 -10.1465 0.5391 38 1 0.8452 -11.2938 1.7811 39 1 1.6698 -9.5312 3.0179 40 1 1.0809 -8.3832 1.7777 41 1 3.5211 -11.2004 2.0132 42 1 4.4677 -10.6406 0.5828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079866552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = -51.127633 kcal Electronic energy + Delta-G solvation = -20667.150861 eV Core-core repulsion = 17645.948783 eV Total energy + Delta-G solvation = -3021.202078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06186 -39.30074 -36.75304 -35.10414 -34.14320 -33.06363 -31.14677 -29.51827 -28.52024 -27.31617 -25.04157 -23.01591 -22.23731 -21.43927 -20.94532 -19.39714 -18.51426 -17.89225 -17.20326 -17.12360 -16.59499 -16.29157 -16.19098 -15.35483 -15.24532 -14.85097 -14.32813 -13.93099 -13.74572 -13.55739 -13.48643 -12.98347 -12.87063 -12.67981 -12.53489 -12.35105 -12.09160 -11.92431 -11.85267 -11.66856 -11.58391 -11.50972 -11.35123 -11.21115 -10.86639 -10.56036 -10.42204 -9.80646 -9.04777 -8.19874 -6.31749 1.41169 1.42831 1.53876 1.92714 2.37052 2.46276 3.13613 3.46942 3.51709 3.64133 3.90423 4.09590 4.13485 4.24299 4.30914 4.35928 4.42509 4.48942 4.57197 4.59488 4.70527 4.73678 4.95043 4.97476 5.00478 5.07990 5.17080 5.18906 5.24584 5.25386 5.39435 5.48254 5.51621 5.68124 5.70561 5.77358 5.83698 6.22096 6.41606 6.65776 6.83883 6.88590 7.37904 7.60413 8.92301 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045585 B = 0.003258 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.089306 B = 8591.103871 C = 8723.593087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.137 3.863 12 N -0.729 5.729 13 C 0.506 3.494 14 O -0.525 6.525 15 C -0.105 4.105 16 H 0.107 0.893 17 C 0.102 3.898 18 H 0.055 0.945 19 N -0.825 5.825 20 C -0.095 4.095 21 H 0.112 0.888 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.088 4.088 25 H 0.111 0.889 26 C -0.111 4.111 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.408 0.592 35 H 0.332 0.668 36 H 0.337 0.663 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -23.673 -0.202 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.012 3.988 12 N -0.383 5.383 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.127 4.127 16 H 0.126 0.874 17 C -0.010 4.010 18 H 0.072 0.928 19 N -0.356 5.356 20 C -0.113 4.113 21 H 0.130 0.870 22 C -0.145 4.145 23 C -0.173 4.173 24 C -0.106 4.106 25 H 0.129 0.871 26 C -0.149 4.149 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.515 -23.545 0.539 25.401 hybrid contribution 0.432 1.195 -0.917 1.567 sum 9.947 -22.350 -0.378 24.467 Atomic orbital electron populations 1.70117 1.07985 1.27811 1.51668 1.26047 0.95764 1.03625 0.94742 0.85397 0.78676 0.78168 0.78494 1.19747 1.21007 1.18387 1.21687 0.93725 0.92045 1.50505 0.91580 1.18939 0.94441 0.93106 0.94880 1.21578 0.98351 0.92152 1.01781 1.21049 0.91979 0.85830 0.99917 1.46203 1.10471 1.05426 1.76191 1.20871 0.90162 0.83499 0.76195 1.90716 1.17822 1.84271 1.47164 1.22527 0.98001 0.93096 0.99081 0.87442 1.22270 0.89976 0.93329 0.95438 0.92765 1.58917 1.22175 1.11335 1.43193 1.23663 0.95623 0.97017 0.94993 0.86976 1.22365 0.98895 0.96108 0.97153 1.22792 0.96128 0.99791 0.98576 1.23530 0.96529 0.97210 0.93380 0.87070 1.23535 0.97705 0.94079 0.99565 0.92799 0.99088 0.99197 0.91743 0.91570 0.93718 0.94175 0.75686 0.85485 0.84890 0.91370 0.92844 0.92680 0.92999 0.90004 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.99 5.27 30.59 0.16 -3.83 16 11 C 0.14 4.97 5.67 86.38 0.49 5.46 16 12 N -0.73 -20.34 5.56 -463.05 -2.57 -22.91 16 13 C 0.51 14.10 5.38 87.66 0.47 14.57 16 14 O -0.52 -18.60 11.43 -3.06 -0.04 -18.63 16 15 C -0.11 -2.02 3.10 -10.01 -0.03 -2.05 16 16 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 17 C 0.10 1.80 3.68 46.46 0.17 1.97 16 18 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 19 N -0.83 -18.04 4.89 -162.27 -0.79 -18.83 16 20 C -0.09 -1.46 5.01 -7.38 -0.04 -1.50 16 21 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.11 -2.31 5.85 32.14 0.19 -2.13 16 23 C -0.14 -3.22 5.80 32.14 0.19 -3.03 16 24 C -0.09 -1.55 4.92 -7.39 -0.04 -1.59 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 C -0.11 -1.43 6.42 33.38 0.21 -1.22 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 8.89 8.45 -92.71 -0.78 8.11 16 35 H 0.33 7.86 8.20 -89.69 -0.74 7.12 16 36 H 0.34 6.15 9.02 -89.69 -0.81 5.34 16 37 H 0.07 1.86 6.50 -2.39 -0.02 1.84 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.65 5.05 -2.39 -0.01 1.64 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.62 323.89 0.23 -69.39 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.30 Total: 24.51 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 2.62 Total: -22.13 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.08 Total: -99.29 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.62 0.23 -69.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.264 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds