Wall clock time and date at job start Mon Mar 30 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00311 * 2 1 4 4 H 1.48495 * 109.47374 * 276.77908 * 3 2 1 5 5 H 1.48495 * 109.47307 * 156.77272 * 3 2 1 6 6 H 1.48503 * 109.46837 * 36.77414 * 3 2 1 7 7 C 1.38812 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00114 * 353.90543 * 7 2 1 9 9 N 1.36939 * 119.99865 * 173.90722 * 7 2 1 10 10 C 1.46500 * 120.00136 * 283.62690 * 9 7 2 11 11 C 1.54268 * 110.02695 * 47.84276 * 10 9 7 12 12 C 1.54891 * 104.19156 * 217.10470 * 11 10 9 13 13 C 1.54889 * 102.75103 * 37.94076 * 12 11 10 14 14 C 1.53872 * 110.03228 * 290.67770 * 10 9 7 15 15 C 1.46509 * 120.00029 * 103.63138 * 9 7 2 16 16 H 1.08997 * 109.62780 * 180.39920 * 15 9 7 17 17 C 1.53057 * 109.63373 * 59.99672 * 15 9 7 18 18 C 1.51793 * 110.74492 * 155.38290 * 17 15 9 19 19 C 1.51779 * 113.80950 * 66.80864 * 18 17 15 20 20 C 1.52989 * 110.87948 * 292.99893 * 19 18 17 21 21 N 1.47195 * 108.66675 * 86.46833 * 20 19 18 22 22 C 1.33370 * 120.42696 * 288.04208 * 21 20 19 23 23 O 1.21280 * 119.89198 * 180.29067 * 22 21 20 24 24 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.01484 * 169.28563 * 10 9 7 26 26 H 1.08996 * 110.48912 * 335.78000 * 11 10 9 27 27 H 1.09003 * 110.48622 * 98.43252 * 11 10 9 28 28 H 1.09005 * 110.75825 * 279.62797 * 12 11 10 29 29 H 1.09002 * 110.75927 * 156.25897 * 12 11 10 30 30 H 1.08991 * 110.48855 * 203.37627 * 13 12 11 31 31 H 1.09001 * 110.59623 * 80.79009 * 13 12 11 32 32 H 1.08999 * 110.02997 * 238.56836 * 14 10 9 33 33 H 1.09001 * 110.03479 * 359.94326 * 14 10 9 34 34 H 1.09004 * 109.22365 * 275.71403 * 17 15 9 35 35 H 1.09004 * 109.22569 * 35.05653 * 17 15 9 36 36 H 1.08993 * 108.61585 * 187.92696 * 18 17 15 37 37 H 1.09000 * 108.61501 * 305.69458 * 18 17 15 38 38 H 1.09000 * 109.19655 * 53.35315 * 19 18 17 39 39 H 1.08998 * 109.19753 * 172.63864 * 19 18 17 40 40 H 1.09007 * 109.60235 * 206.21982 * 20 19 18 41 41 H 1.09000 * 109.60729 * 326.54581 * 20 19 18 42 42 H 0.97000 * 119.78742 * 108.03531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3547 2.1290 -1.3902 5 1 3.6120 1.4031 0.5521 6 1 1.5266 2.6071 0.8382 7 6 2.0102 -1.2022 -0.0005 8 1 1.4748 -2.1349 0.0983 9 7 3.3738 -1.2055 -0.1264 10 6 3.9892 -0.9736 -1.4355 11 6 3.3492 0.2576 -2.1095 12 6 3.2872 -0.1203 -3.6103 13 6 2.9281 -1.6265 -3.5690 14 6 3.7213 -2.1715 -2.3634 15 6 4.2173 -1.4410 1.0481 16 1 5.2674 -1.4004 0.7588 17 6 3.9001 -2.8155 1.6418 18 6 5.0858 -3.3497 2.4247 19 6 5.4015 -2.5536 3.6778 20 6 5.8963 -1.1503 3.3220 21 7 4.7303 -0.2665 3.1604 22 6 3.9334 -0.3872 2.0978 23 8 2.9783 0.3496 1.9718 24 1 -0.4850 0.8401 0.0004 25 1 5.0626 -0.8222 -1.3216 26 1 2.3467 0.4291 -1.7176 27 1 3.9729 1.1396 -1.9638 28 1 4.2550 0.0330 -4.0877 29 1 2.5094 0.4483 -4.1201 30 1 3.2444 -2.1194 -4.4881 31 1 1.8577 -1.7614 -3.4137 32 1 4.6648 -2.6009 -2.7006 33 1 3.1344 -2.9258 -1.8394 34 1 3.0404 -2.7297 2.3065 35 1 3.6612 -3.5085 0.8351 36 1 4.8779 -4.3807 2.7107 37 1 5.9626 -3.3414 1.7771 38 1 4.5014 -2.4724 4.2871 39 1 6.1731 -3.0720 4.2469 40 1 6.5330 -0.7731 4.1224 41 1 6.4622 -1.1870 2.3911 42 1 4.5402 0.4079 3.8312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:43 Heat of formation + Delta-G solvation = 2.684315 kcal Electronic energy + Delta-G solvation = -22649.809193 eV Core-core repulsion = 19630.940576 eV Total energy + Delta-G solvation = -3018.868617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67914 -37.63597 -36.12157 -34.30689 -32.44960 -31.49559 -29.45258 -27.97566 -26.72540 -25.56665 -23.59681 -22.67823 -20.43714 -19.94224 -18.98810 -18.85339 -16.70957 -16.54864 -16.26369 -15.21193 -14.76459 -14.48535 -14.36639 -13.67957 -13.56274 -13.38810 -13.03603 -12.89479 -12.61473 -12.18150 -11.96835 -11.41476 -11.15913 -10.94246 -10.78533 -10.73961 -10.45503 -10.37947 -10.31574 -10.22576 -9.97079 -9.93976 -9.59328 -9.49855 -8.81378 -8.66751 -8.21983 -7.84003 -6.11230 -5.64262 -3.69495 3.42906 3.73698 3.84579 3.91637 4.04015 4.88379 4.90488 4.95900 5.08176 5.19758 5.44219 5.47272 5.52959 5.65735 5.68024 5.71390 5.76680 5.80288 5.89851 6.04326 6.14697 6.24564 6.30803 6.34325 6.38475 6.42208 6.51460 6.54383 6.67437 6.69378 6.71812 6.87485 6.99206 7.08103 7.23892 7.32703 7.47798 7.95698 8.37903 8.85389 9.12148 9.29490 9.90967 10.36400 11.34316 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.009756 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.250034 B = 2869.353097 C = 3520.500731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.071 3.929 3 Si 0.986 3.014 4 H -0.324 1.324 5 H -0.269 1.269 6 H -0.332 1.332 7 C -0.281 4.281 8 H 0.059 0.941 9 N -0.581 5.581 10 C 0.172 3.828 11 C -0.163 4.163 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.126 4.126 15 C 0.164 3.836 16 H 0.066 0.934 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.140 4.140 20 C 0.114 3.886 21 N -0.743 5.743 22 C 0.487 3.513 23 O -0.495 6.495 24 H 0.259 0.741 25 H 0.045 0.955 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.845 -4.494 2.410 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.827 3.173 4 H -0.257 1.257 5 H -0.197 1.197 6 H -0.263 1.263 7 C -0.410 4.410 8 H 0.076 0.924 9 N -0.302 5.302 10 C 0.066 3.934 11 C -0.201 4.201 12 C -0.155 4.155 13 C -0.153 4.153 14 C -0.165 4.165 15 C 0.054 3.946 16 H 0.084 0.916 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.178 4.178 20 C -0.011 4.011 21 N -0.399 5.399 22 C 0.273 3.727 23 O -0.369 6.369 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.123 0.877 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 13.173 -4.205 2.166 13.996 hybrid contribution 0.310 1.206 0.539 1.356 sum 13.482 -3.000 2.705 14.075 Atomic orbital electron populations 1.69862 1.07171 1.27002 1.50353 1.26383 0.94862 1.00246 0.91717 0.85834 0.80243 0.80214 0.71032 1.25693 1.19667 1.26274 1.18094 0.79395 0.92118 1.51402 0.92384 1.43949 1.02981 1.83650 0.99631 1.21219 0.93737 0.92243 0.86188 1.23526 1.03922 0.97493 0.95117 1.22334 0.99685 0.96599 0.96878 1.22223 1.01000 0.95099 0.96973 1.22528 0.98232 0.99511 0.96224 1.20643 0.94493 0.91291 0.88185 0.91590 1.21605 0.97213 0.96825 0.99715 1.21177 0.99057 0.99096 0.96293 1.21830 1.01669 0.95853 0.98464 1.21582 0.87953 0.90059 1.01490 1.46252 1.29389 1.38530 1.25742 1.21847 0.82367 0.85467 0.83000 1.90092 1.28662 1.43770 1.74340 0.93153 0.93689 0.87664 0.93594 0.92857 0.92653 0.93435 0.91353 0.93954 0.90883 0.91870 0.90755 0.92463 0.92522 0.91337 0.91568 0.90666 0.91240 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.07 2.14 4.02 -17.43 -0.07 2.07 16 3 Si 0.99 27.71 19.71 -169.99 -3.35 24.36 16 4 H -0.32 -8.75 5.75 56.52 0.33 -8.42 16 5 H -0.27 -7.39 5.20 56.52 0.29 -7.10 16 6 H -0.33 -9.95 7.11 56.52 0.40 -9.55 16 7 C -0.28 -7.93 7.55 -15.06 -0.11 -8.04 16 8 H 0.06 1.82 8.06 -52.48 -0.42 1.40 16 9 N -0.58 -13.63 1.35 -157.75 -0.21 -13.85 16 10 C 0.17 3.63 3.37 -66.81 -0.23 3.40 16 11 C -0.16 -3.68 3.51 -25.07 -0.09 -3.77 16 12 C -0.12 -2.20 6.91 -24.74 -0.17 -2.37 16 13 C -0.12 -2.11 6.83 -25.08 -0.17 -2.28 16 14 C -0.13 -2.37 6.37 -25.62 -0.16 -2.53 16 15 C 0.16 3.28 2.35 -68.69 -0.16 3.12 16 16 H 0.07 1.16 6.26 -51.93 -0.33 0.84 16 17 C -0.11 -2.00 4.75 -27.31 -0.13 -2.13 16 18 C -0.12 -1.50 5.27 -27.96 -0.15 -1.65 16 19 C -0.14 -1.57 5.74 -27.36 -0.16 -1.73 16 20 C 0.11 1.31 6.46 -3.67 -0.02 1.29 16 21 N -0.74 -11.93 5.27 -59.90 -0.32 -12.25 16 22 C 0.49 10.41 6.19 -11.25 -0.07 10.34 16 23 O -0.49 -13.16 9.45 5.56 0.05 -13.10 16 24 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 25 H 0.04 0.86 7.64 -51.93 -0.40 0.46 16 26 H 0.11 2.81 2.71 -51.93 -0.14 2.67 16 27 H 0.05 1.02 6.86 -51.93 -0.36 0.66 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.50 7.69 -51.93 -0.40 1.10 16 34 H 0.06 1.27 7.86 -51.93 -0.41 0.86 16 35 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 38 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 42 H 0.39 5.77 8.91 -40.82 -0.36 5.41 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -34.29 297.30 -7.37 -41.67 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.11 Total: 1.30 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.69 Total: -4.29 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.25 Total: -54.42 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.05 Total: -13.10 kcal Atomic # 14 Polarization: 27.71 SS G_CDS: -3.35 Total: 24.36 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.29 -7.37 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.351 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds