Wall clock time and date at job start Mon Mar 30 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00311 * 2 1 4 4 H 1.48495 * 109.47374 * 276.77908 * 3 2 1 5 5 H 1.48495 * 109.47307 * 156.77272 * 3 2 1 6 6 H 1.48503 * 109.46837 * 36.77414 * 3 2 1 7 7 C 1.38812 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00114 * 353.90543 * 7 2 1 9 9 N 1.36939 * 119.99865 * 173.90722 * 7 2 1 10 10 C 1.46500 * 120.00136 * 283.62690 * 9 7 2 11 11 C 1.54268 * 110.02695 * 47.84276 * 10 9 7 12 12 C 1.54891 * 104.19156 * 217.10470 * 11 10 9 13 13 C 1.54889 * 102.75103 * 37.94076 * 12 11 10 14 14 C 1.53872 * 110.03228 * 290.67770 * 10 9 7 15 15 C 1.46509 * 120.00029 * 103.63138 * 9 7 2 16 16 H 1.08997 * 109.62780 * 180.39920 * 15 9 7 17 17 C 1.53057 * 109.63373 * 59.99672 * 15 9 7 18 18 C 1.51793 * 110.74492 * 155.38290 * 17 15 9 19 19 C 1.51779 * 113.80950 * 66.80864 * 18 17 15 20 20 C 1.52989 * 110.87948 * 292.99893 * 19 18 17 21 21 N 1.47195 * 108.66675 * 86.46833 * 20 19 18 22 22 C 1.33370 * 120.42696 * 288.04208 * 21 20 19 23 23 O 1.21280 * 119.89198 * 180.29067 * 22 21 20 24 24 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.01484 * 169.28563 * 10 9 7 26 26 H 1.08996 * 110.48912 * 335.78000 * 11 10 9 27 27 H 1.09003 * 110.48622 * 98.43252 * 11 10 9 28 28 H 1.09005 * 110.75825 * 279.62797 * 12 11 10 29 29 H 1.09002 * 110.75927 * 156.25897 * 12 11 10 30 30 H 1.08991 * 110.48855 * 203.37627 * 13 12 11 31 31 H 1.09001 * 110.59623 * 80.79009 * 13 12 11 32 32 H 1.08999 * 110.02997 * 238.56836 * 14 10 9 33 33 H 1.09001 * 110.03479 * 359.94326 * 14 10 9 34 34 H 1.09004 * 109.22365 * 275.71403 * 17 15 9 35 35 H 1.09004 * 109.22569 * 35.05653 * 17 15 9 36 36 H 1.08993 * 108.61585 * 187.92696 * 18 17 15 37 37 H 1.09000 * 108.61501 * 305.69458 * 18 17 15 38 38 H 1.09000 * 109.19655 * 53.35315 * 19 18 17 39 39 H 1.08998 * 109.19753 * 172.63864 * 19 18 17 40 40 H 1.09007 * 109.60235 * 206.21982 * 20 19 18 41 41 H 1.09000 * 109.60729 * 326.54581 * 20 19 18 42 42 H 0.97000 * 119.78742 * 108.03531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3547 2.1290 -1.3902 5 1 3.6120 1.4031 0.5521 6 1 1.5266 2.6071 0.8382 7 6 2.0102 -1.2022 -0.0005 8 1 1.4748 -2.1349 0.0983 9 7 3.3738 -1.2055 -0.1264 10 6 3.9892 -0.9736 -1.4355 11 6 3.3492 0.2576 -2.1095 12 6 3.2872 -0.1203 -3.6103 13 6 2.9281 -1.6265 -3.5690 14 6 3.7213 -2.1715 -2.3634 15 6 4.2173 -1.4410 1.0481 16 1 5.2674 -1.4004 0.7588 17 6 3.9001 -2.8155 1.6418 18 6 5.0858 -3.3497 2.4247 19 6 5.4015 -2.5536 3.6778 20 6 5.8963 -1.1503 3.3220 21 7 4.7303 -0.2665 3.1604 22 6 3.9334 -0.3872 2.0978 23 8 2.9783 0.3496 1.9718 24 1 -0.4850 0.8401 0.0004 25 1 5.0626 -0.8222 -1.3216 26 1 2.3467 0.4291 -1.7176 27 1 3.9729 1.1396 -1.9638 28 1 4.2550 0.0330 -4.0877 29 1 2.5094 0.4483 -4.1201 30 1 3.2444 -2.1194 -4.4881 31 1 1.8577 -1.7614 -3.4137 32 1 4.6648 -2.6009 -2.7006 33 1 3.1344 -2.9258 -1.8394 34 1 3.0404 -2.7297 2.3065 35 1 3.6612 -3.5085 0.8351 36 1 4.8779 -4.3807 2.7107 37 1 5.9626 -3.3414 1.7771 38 1 4.5014 -2.4724 4.2871 39 1 6.1731 -3.0720 4.2469 40 1 6.5330 -0.7731 4.1224 41 1 6.4622 -1.1870 2.3911 42 1 4.5402 0.4079 3.8312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:43 Heat of formation + Delta-G solvation = -23.427019 kcal Electronic energy + Delta-G solvation = -22650.941466 eV Core-core repulsion = 19630.940576 eV Total energy + Delta-G solvation = -3020.000889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23556 -39.26310 -37.54190 -35.92003 -34.17562 -33.35753 -30.90808 -29.57791 -28.32395 -27.22200 -24.92336 -24.46686 -21.69085 -21.44671 -20.62265 -20.51812 -18.47238 -18.16046 -17.83938 -16.80286 -16.54731 -16.16370 -15.97859 -15.31480 -14.91847 -14.82605 -14.49114 -14.45865 -14.20873 -13.85091 -13.61174 -12.94989 -12.71321 -12.59827 -12.42414 -12.36155 -12.07139 -11.82457 -11.77088 -11.61287 -11.54961 -11.41118 -11.21037 -11.18014 -10.77590 -10.46971 -10.29608 -9.57022 -8.20043 -7.80283 -6.00424 1.34877 1.56488 1.69056 2.05699 2.49899 2.73922 3.32374 3.34929 3.82906 3.93741 3.97141 4.08568 4.09744 4.22378 4.27467 4.49986 4.52637 4.65481 4.69938 4.72255 4.78897 4.88180 4.90531 4.97330 5.00569 5.11547 5.17073 5.18628 5.23699 5.31028 5.31994 5.47901 5.51515 5.58052 5.62941 5.69864 6.08125 6.17837 6.46815 6.51195 7.38209 7.60310 7.71137 8.21620 9.05209 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.009756 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.250034 B = 2869.353097 C = 3520.500731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C 0.024 3.976 3 Si 1.049 2.951 4 H -0.319 1.319 5 H -0.257 1.257 6 H -0.369 1.369 7 C -0.245 4.245 8 H 0.011 0.989 9 N -0.594 5.594 10 C 0.163 3.837 11 C -0.177 4.177 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.159 3.841 16 H 0.107 0.893 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.136 4.136 20 C 0.106 3.894 21 N -0.730 5.730 22 C 0.479 3.521 23 O -0.562 6.562 24 H 0.252 0.748 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 -5.640 2.196 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.172 4.172 3 Si 0.891 3.109 4 H -0.251 1.251 5 H -0.184 1.184 6 H -0.304 1.304 7 C -0.375 4.375 8 H 0.028 0.972 9 N -0.315 5.315 10 C 0.058 3.942 11 C -0.215 4.215 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.158 4.158 15 C 0.049 3.951 16 H 0.124 0.876 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.175 4.175 20 C -0.017 4.017 21 N -0.383 5.383 22 C 0.266 3.734 23 O -0.442 6.442 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 18.516 -5.406 1.975 19.389 hybrid contribution -1.230 1.408 0.700 1.996 sum 17.285 -3.998 2.675 17.942 Atomic orbital electron populations 1.69999 1.08866 1.26931 1.54451 1.26981 0.95030 1.02944 0.92257 0.84913 0.79410 0.76596 0.69998 1.25148 1.18365 1.30383 1.17646 0.81806 0.89633 1.48369 0.97161 1.44067 1.01597 1.83864 1.02018 1.21477 0.95226 0.92476 0.84973 1.23513 1.01357 0.98573 0.98097 1.22344 1.01666 0.96361 0.94353 1.22208 0.98862 0.95457 0.98619 1.22455 0.99835 0.97903 0.95585 1.20896 0.95667 0.91793 0.86726 0.87580 1.21487 0.98278 0.95542 0.99081 1.21141 0.97361 0.99688 0.96847 1.21825 1.02059 0.95894 0.97684 1.22041 0.86418 0.89329 1.03891 1.46191 1.29499 1.38638 1.23968 1.22128 0.81973 0.84960 0.84311 1.90012 1.31584 1.46275 1.76309 0.93921 0.90095 0.92251 0.93311 0.88911 0.93191 0.89580 0.95040 0.89680 0.93648 0.95993 0.92091 0.91150 0.89743 0.93484 0.87471 0.86599 0.89759 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -66.20 13.97 21.65 0.30 -65.89 16 2 C 0.02 1.56 4.02 84.86 0.34 1.90 16 3 Si 1.05 60.64 19.71 68.60 1.35 61.99 16 4 H -0.32 -17.45 5.75 99.48 0.57 -16.87 16 5 H -0.26 -14.03 5.20 99.48 0.52 -13.52 16 6 H -0.37 -23.30 7.11 99.48 0.71 -22.59 16 7 C -0.24 -14.47 7.55 84.03 0.63 -13.84 16 8 H 0.01 0.73 8.06 -2.91 -0.02 0.71 16 9 N -0.59 -27.70 1.35 -652.99 -0.88 -28.58 16 10 C 0.16 6.50 3.37 45.72 0.15 6.65 16 11 C -0.18 -7.80 3.51 31.67 0.11 -7.68 16 12 C -0.11 -3.84 6.91 31.89 0.22 -3.62 16 13 C -0.11 -3.94 6.83 31.67 0.22 -3.73 16 14 C -0.12 -4.16 6.37 31.32 0.20 -3.96 16 15 C 0.16 6.04 2.35 44.49 0.10 6.15 16 16 H 0.11 3.20 6.26 -2.39 -0.01 3.18 16 17 C -0.10 -3.56 4.75 30.22 0.14 -3.42 16 18 C -0.11 -2.40 5.27 29.80 0.16 -2.25 16 19 C -0.14 -2.43 5.74 30.19 0.17 -2.26 16 20 C 0.11 1.88 6.46 86.24 0.56 2.43 16 21 N -0.73 -21.55 5.27 -462.59 -2.44 -23.99 16 22 C 0.48 20.05 6.19 88.11 0.55 20.60 16 23 O -0.56 -30.58 9.45 -3.03 -0.03 -30.60 16 24 H 0.25 16.89 8.31 -92.71 -0.77 16.12 16 25 H 0.08 2.67 7.64 -2.39 -0.02 2.65 16 26 H 0.06 3.23 2.71 -2.39 -0.01 3.22 16 27 H 0.05 2.07 6.86 -2.39 -0.02 2.05 16 28 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.04 1.84 7.69 -2.39 -0.02 1.82 16 34 H 0.02 0.90 7.86 -2.39 -0.02 0.88 16 35 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.41 7.88 -2.39 -0.02 1.39 16 38 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.08 1.34 6.73 -2.39 -0.02 1.32 16 42 H 0.39 10.96 8.91 -92.71 -0.83 10.13 16 Total: -1.00 -84.22 297.30 1.71 -82.50 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -0.15 Total: 7.59 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 3.56 Total: -3.01 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -3.02 Total: -118.47 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.03 Total: -30.60 kcal Atomic # 14 Polarization: 60.64 SS G_CDS: 1.35 Total: 61.99 kcal Total: -84.22 1.71 -82.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.075 kcal (2) G-P(sol) polarization free energy of solvation -84.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds