Wall clock time and date at job start Mon Mar 30 2020 04:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99639 * 2 1 4 4 H 1.48501 * 109.46990 * 269.99971 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00289 * 3 2 1 6 6 H 1.48506 * 109.46842 * 150.00514 * 3 2 1 7 7 C 1.37872 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99927 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99907 * 90.00286 * 10 9 7 12 12 O 1.21282 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00042 * 180.02562 * 11 10 9 14 14 H 1.09003 * 108.68999 * 321.64989 * 13 11 10 15 15 C 1.50449 * 108.81361 * 79.99743 * 13 11 10 16 16 C 1.54316 * 108.66768 * 214.68865 * 15 13 11 17 17 C 1.45872 * 112.18080 * 281.38074 * 16 15 13 18 18 C 1.54307 * 112.19491 * 61.11948 * 17 16 15 19 19 C 1.50444 * 108.48910 * 281.45131 * 18 17 16 20 20 N 1.47994 * 112.82319 * 93.73578 * 19 18 17 21 21 C 1.46505 * 120.00287 * 269.99969 * 10 9 7 22 22 C 1.52999 * 117.49521 * 8.62328 * 21 10 9 23 23 C 1.52992 * 117.49973 * 300.00026 * 21 10 9 24 24 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47191 * 60.00395 * 9 7 2 26 26 H 1.09000 * 109.47380 * 300.00347 * 9 7 2 27 27 H 1.09002 * 109.63280 * 94.88518 * 15 13 11 28 28 H 1.08995 * 109.62983 * 334.49367 * 15 13 11 29 29 H 1.09001 * 108.93600 * 42.07388 * 16 15 13 30 30 H 1.09004 * 108.93933 * 160.68202 * 16 15 13 31 31 H 1.09008 * 108.93797 * 181.81467 * 17 16 15 32 32 H 1.08994 * 108.94031 * 300.41713 * 17 16 15 33 33 H 1.09002 * 109.62976 * 41.14897 * 18 17 16 34 34 H 1.08999 * 109.63427 * 161.74835 * 18 17 16 35 35 H 1.09007 * 108.81071 * 214.59474 * 19 18 17 36 36 H 1.09002 * 108.81732 * 332.86709 * 19 18 17 37 37 H 1.00897 * 111.00245 * 191.34488 * 20 19 18 38 38 H 1.08995 * 115.54894 * 154.32862 * 21 10 9 39 39 H 1.08998 * 117.50195 * 0.02562 * 22 21 10 40 40 H 1.09002 * 117.49523 * 145.01847 * 22 21 10 41 41 H 1.08994 * 117.50138 * 214.97365 * 23 21 10 42 42 H 1.09001 * 117.50047 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6419 -4.1254 1.1649 12 8 2.2489 -3.6646 2.2157 13 6 3.6216 -5.2704 1.1637 14 1 3.3614 -5.9518 0.3536 15 6 5.0025 -4.7271 0.9159 16 6 5.7953 -5.7550 0.0816 17 6 6.2925 -6.8588 0.8954 18 6 5.1495 -7.6526 1.5620 19 6 4.6664 -6.8794 2.7587 20 7 3.5162 -6.0012 2.4487 21 6 2.6782 -4.1689 -1.2711 22 6 2.3062 -3.4213 -2.5532 23 6 1.6319 -4.7540 -2.2216 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 5.5069 -4.5609 1.8678 28 1 4.9334 -3.7868 0.3690 29 1 5.1461 -6.1544 -0.6976 30 1 6.6411 -5.2527 -0.3880 31 1 6.8692 -7.5333 0.2623 32 1 6.9456 -6.4599 1.6715 33 1 4.3308 -7.7804 0.8537 34 1 5.5179 -8.6278 1.8803 35 1 4.3712 -7.5838 3.5365 36 1 5.4853 -6.2664 3.1352 37 1 3.3320 -5.3645 3.2094 38 1 3.6535 -4.6541 -1.2360 39 1 1.7085 -2.5154 -2.4522 40 1 3.0371 -3.4145 -3.3618 41 1 1.9189 -5.6239 -2.8122 42 1 0.5899 -4.7248 -1.9028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080997429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:11 Heat of formation + Delta-G solvation = -10.875232 kcal Electronic energy + Delta-G solvation = -21573.398396 eV Core-core repulsion = 18553.941793 eV Total energy + Delta-G solvation = -3019.456603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03066 -38.06128 -36.70136 -33.36459 -33.02982 -32.49422 -31.69897 -27.75367 -25.93147 -25.18811 -23.01682 -22.06021 -21.71600 -20.72493 -19.99683 -18.31788 -17.23837 -16.42156 -15.99568 -15.21453 -15.10018 -14.84602 -14.36672 -14.21840 -13.75959 -13.64920 -13.44243 -13.11411 -12.42862 -12.34942 -12.20565 -11.78101 -11.46770 -11.41407 -11.00715 -10.89262 -10.88755 -10.83193 -10.66721 -10.58093 -10.52636 -10.45773 -10.13798 -10.05166 -9.51186 -8.79251 -8.43781 -8.18468 -7.52873 -6.04342 -4.08879 3.29117 3.31022 3.36459 3.40573 3.72963 4.29162 4.41028 4.46800 4.61999 4.69628 4.85576 5.00814 5.17891 5.20817 5.27960 5.29894 5.35571 5.45245 5.47889 5.56299 5.61415 5.68187 5.88491 5.98929 5.99783 6.02106 6.05387 6.12611 6.15229 6.22145 6.30869 6.45393 6.74447 7.00568 7.20910 7.44080 7.52156 7.60589 7.91928 8.22841 8.41615 8.89480 9.07196 9.55899 11.03511 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.005798 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.857269 B = 4828.019051 C = 5124.958339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.244 3.756 10 N -0.567 5.567 11 C 0.513 3.487 12 O -0.537 6.537 13 C 0.078 3.922 14 H 0.094 0.906 15 C -0.143 4.143 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.123 4.123 19 C 0.068 3.932 20 N -0.688 5.688 21 C 0.072 3.928 22 C -0.175 4.175 23 C -0.202 4.202 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.357 0.643 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -14.009 -2.456 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.125 3.875 10 N -0.297 5.297 11 C 0.299 3.701 12 O -0.414 6.414 13 C -0.035 4.035 14 H 0.112 0.888 15 C -0.182 4.182 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.161 4.161 19 C -0.061 4.061 20 N -0.324 5.324 21 C -0.034 4.034 22 C -0.212 4.212 23 C -0.241 4.241 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.179 0.821 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.045 -14.105 -2.145 17.448 hybrid contribution 1.106 1.680 0.118 2.014 sum 11.151 -12.425 -2.028 16.818 Atomic orbital electron populations 1.69931 1.05954 1.26983 1.50493 1.24919 0.94845 0.99119 0.95172 0.86523 0.79853 0.83220 0.77984 1.20635 1.21123 1.19981 1.21380 0.93266 0.90472 1.50841 0.92519 1.19309 0.87574 0.82120 0.98474 1.47671 1.44843 1.34276 1.02865 1.20248 0.82074 0.83739 0.84048 1.90643 1.58303 1.61735 1.30752 1.21330 0.93705 0.94135 0.94285 0.88797 1.21940 0.95461 0.99536 1.01289 1.20561 1.00161 0.96260 0.98452 1.20615 0.98041 0.97420 0.99711 1.21459 0.98402 0.98242 0.97990 1.21591 0.91589 0.95409 0.97518 1.60244 1.40450 1.26965 1.04774 1.21578 0.96942 1.02159 0.82752 1.23340 1.03645 0.97085 0.97141 1.23388 0.99365 0.97224 1.04118 0.92728 0.94712 0.93846 0.91313 0.90314 0.91803 0.91902 0.92158 0.92284 0.90647 0.91315 0.91124 0.95366 0.82077 0.86503 0.86324 0.88966 0.88987 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.59 9.19 -34.44 -0.32 -14.90 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.24 6.36 4.46 -5.19 -0.02 6.34 16 10 N -0.57 -12.12 2.79 -167.47 -0.47 -12.59 16 11 C 0.51 10.87 6.59 -10.99 -0.07 10.80 16 12 O -0.54 -13.61 15.32 5.56 0.09 -13.53 16 13 C 0.08 1.24 1.73 -69.42 -0.12 1.12 16 14 H 0.09 1.39 5.48 -51.93 -0.28 1.11 16 15 C -0.14 -1.99 4.28 -27.32 -0.12 -2.10 16 16 C -0.12 -1.23 5.09 -29.42 -0.15 -1.38 16 17 C -0.12 -1.13 5.30 -29.42 -0.16 -1.28 16 18 C -0.12 -1.22 5.63 -27.32 -0.15 -1.37 16 19 C 0.07 0.78 6.01 -4.50 -0.03 0.76 16 20 N -0.69 -10.45 6.65 -108.93 -0.72 -11.18 16 21 C 0.07 1.20 5.42 -67.93 -0.37 0.84 16 22 C -0.17 -2.86 9.72 -26.73 -0.26 -3.12 16 23 C -0.20 -3.01 10.13 -26.74 -0.27 -3.29 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.04 0.91 6.32 -51.93 -0.33 0.59 16 26 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 27 H 0.07 0.97 7.08 -51.93 -0.37 0.61 16 28 H 0.08 1.24 7.25 -51.93 -0.38 0.86 16 29 H 0.06 0.64 6.85 -51.93 -0.36 0.29 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 33 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.32 6.59 -51.93 -0.34 -0.02 16 37 H 0.36 6.03 7.55 -39.29 -0.30 5.73 16 38 H 0.12 1.65 5.07 -51.93 -0.26 1.39 16 39 H 0.12 2.37 6.29 -51.93 -0.33 2.04 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.56 8.12 -51.93 -0.42 1.14 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -31.39 321.52 -9.27 -40.65 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.59 Total: 6.65 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.13 Total: -5.95 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.46 Total: -49.47 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.39 -9.27 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080997429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.779 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds