Wall clock time and date at job start Mon Mar 30 2020 04:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99639 * 2 1 4 4 H 1.48501 * 109.46990 * 269.99971 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00289 * 3 2 1 6 6 H 1.48506 * 109.46842 * 150.00514 * 3 2 1 7 7 C 1.37872 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99927 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99907 * 90.00286 * 10 9 7 12 12 O 1.21282 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00042 * 180.02562 * 11 10 9 14 14 H 1.09003 * 108.68999 * 321.64989 * 13 11 10 15 15 C 1.50449 * 108.81361 * 79.99743 * 13 11 10 16 16 C 1.54316 * 108.66768 * 214.68865 * 15 13 11 17 17 C 1.45872 * 112.18080 * 281.38074 * 16 15 13 18 18 C 1.54307 * 112.19491 * 61.11948 * 17 16 15 19 19 C 1.50444 * 108.48910 * 281.45131 * 18 17 16 20 20 N 1.47994 * 112.82319 * 93.73578 * 19 18 17 21 21 C 1.46505 * 120.00287 * 269.99969 * 10 9 7 22 22 C 1.52999 * 117.49521 * 8.62328 * 21 10 9 23 23 C 1.52992 * 117.49973 * 300.00026 * 21 10 9 24 24 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47191 * 60.00395 * 9 7 2 26 26 H 1.09000 * 109.47380 * 300.00347 * 9 7 2 27 27 H 1.09002 * 109.63280 * 94.88518 * 15 13 11 28 28 H 1.08995 * 109.62983 * 334.49367 * 15 13 11 29 29 H 1.09001 * 108.93600 * 42.07388 * 16 15 13 30 30 H 1.09004 * 108.93933 * 160.68202 * 16 15 13 31 31 H 1.09008 * 108.93797 * 181.81467 * 17 16 15 32 32 H 1.08994 * 108.94031 * 300.41713 * 17 16 15 33 33 H 1.09002 * 109.62976 * 41.14897 * 18 17 16 34 34 H 1.08999 * 109.63427 * 161.74835 * 18 17 16 35 35 H 1.09007 * 108.81071 * 214.59474 * 19 18 17 36 36 H 1.09002 * 108.81732 * 332.86709 * 19 18 17 37 37 H 1.00897 * 111.00245 * 191.34488 * 20 19 18 38 38 H 1.08995 * 115.54894 * 154.32862 * 21 10 9 39 39 H 1.08998 * 117.50195 * 0.02562 * 22 21 10 40 40 H 1.09002 * 117.49523 * 145.01847 * 22 21 10 41 41 H 1.08994 * 117.50138 * 214.97365 * 23 21 10 42 42 H 1.09001 * 117.50047 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6419 -4.1254 1.1649 12 8 2.2489 -3.6646 2.2157 13 6 3.6216 -5.2704 1.1637 14 1 3.3614 -5.9518 0.3536 15 6 5.0025 -4.7271 0.9159 16 6 5.7953 -5.7550 0.0816 17 6 6.2925 -6.8588 0.8954 18 6 5.1495 -7.6526 1.5620 19 6 4.6664 -6.8794 2.7587 20 7 3.5162 -6.0012 2.4487 21 6 2.6782 -4.1689 -1.2711 22 6 2.3062 -3.4213 -2.5532 23 6 1.6319 -4.7540 -2.2216 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 5.5069 -4.5609 1.8678 28 1 4.9334 -3.7868 0.3690 29 1 5.1461 -6.1544 -0.6976 30 1 6.6411 -5.2527 -0.3880 31 1 6.8692 -7.5333 0.2623 32 1 6.9456 -6.4599 1.6715 33 1 4.3308 -7.7804 0.8537 34 1 5.5179 -8.6278 1.8803 35 1 4.3712 -7.5838 3.5365 36 1 5.4853 -6.2664 3.1352 37 1 3.3320 -5.3645 3.2094 38 1 3.6535 -4.6541 -1.2360 39 1 1.7085 -2.5154 -2.4522 40 1 3.0371 -3.4145 -3.3618 41 1 1.9189 -5.6239 -2.8122 42 1 0.5899 -4.7248 -1.9028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080997429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:10 Heat of formation + Delta-G solvation = -32.424395 kcal Electronic energy + Delta-G solvation = -21574.332838 eV Core-core repulsion = 18553.941793 eV Total energy + Delta-G solvation = -3020.391045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46102 -39.27556 -38.23067 -35.27219 -34.16599 -33.94910 -33.15113 -29.65777 -27.11307 -26.36066 -24.91180 -23.42272 -23.06198 -21.68288 -21.12123 -19.76804 -18.73345 -18.53041 -17.41484 -16.77635 -16.39605 -16.13168 -15.74864 -15.62451 -15.17992 -14.89753 -14.59889 -14.32544 -14.19094 -13.62002 -13.40955 -13.27585 -13.05955 -12.93143 -12.65332 -12.62466 -12.27138 -12.21639 -12.12665 -11.90803 -11.75617 -11.50213 -11.43661 -11.41215 -11.22305 -10.65579 -10.43911 -9.34751 -9.25919 -8.23088 -6.37736 1.33907 1.36906 1.46861 1.69854 2.14057 2.38579 3.04994 3.06299 3.17576 3.49310 3.73740 3.89083 3.93419 4.02815 4.06854 4.18685 4.24302 4.29022 4.43047 4.58310 4.71550 4.76976 4.85031 4.85570 4.94210 5.00328 5.09318 5.11297 5.21013 5.24747 5.26648 5.29108 5.38174 5.40456 5.50552 5.53713 5.79676 6.03827 6.07717 6.32503 6.67397 6.76066 7.25341 7.41546 8.83711 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.005798 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.857269 B = 4828.019051 C = 5124.958339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.263 3.737 10 N -0.573 5.573 11 C 0.499 3.501 12 O -0.593 6.593 13 C 0.098 3.902 14 H 0.112 0.888 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.065 3.935 20 N -0.701 5.701 21 C 0.053 3.947 22 C -0.180 4.180 23 C -0.179 4.179 24 H 0.267 0.733 25 H 0.026 0.974 26 H -0.008 1.008 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.030 0.970 37 H 0.344 0.656 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 -15.730 -4.177 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.142 3.858 10 N -0.302 5.302 11 C 0.288 3.712 12 O -0.474 6.474 13 C -0.014 4.014 14 H 0.130 0.870 15 C -0.179 4.179 16 C -0.147 4.147 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.063 4.063 20 N -0.336 5.336 21 C -0.051 4.051 22 C -0.217 4.217 23 C -0.218 4.218 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.010 0.990 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.093 0.907 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.795 -15.869 -3.914 20.757 hybrid contribution 0.201 2.186 0.683 2.299 sum 12.996 -13.683 -3.232 19.146 Atomic orbital electron populations 1.70055 1.07543 1.28092 1.51158 1.25822 0.95738 1.02903 0.94538 0.85447 0.78219 0.78499 0.78839 1.18668 1.20702 1.19926 1.21569 0.92978 0.91614 1.50885 0.93123 1.18710 0.87958 0.83721 0.95441 1.47646 1.44018 1.33273 1.05240 1.21370 0.82188 0.84631 0.83010 1.90601 1.60332 1.63753 1.32674 1.21257 0.92838 0.91989 0.95349 0.86992 1.21920 0.94649 0.99846 1.01500 1.20550 1.00280 0.95652 0.98220 1.20613 0.97896 0.97259 0.99909 1.21486 0.98415 0.99062 0.96870 1.21775 0.90413 0.95049 0.99047 1.60348 1.42644 1.26662 1.03927 1.22052 0.99097 1.03212 0.80733 1.23310 1.04324 0.96112 0.97971 1.23453 0.97622 0.97995 1.02706 0.92441 0.95568 0.99030 0.91989 0.92383 0.90536 0.90495 0.89740 0.92342 0.91257 0.89038 0.90126 0.95209 0.83672 0.83020 0.90691 0.85289 0.84334 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.53 -31.05 9.19 25.60 0.24 -30.82 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 9 C 0.26 14.58 4.46 85.63 0.38 14.96 16 10 N -0.57 -25.36 2.79 -802.15 -2.24 -27.60 16 11 C 0.50 21.97 6.59 87.65 0.58 22.55 16 12 O -0.59 -32.03 15.32 -3.04 -0.05 -32.08 16 13 C 0.10 3.04 1.73 43.09 0.07 3.11 16 14 H 0.11 3.05 5.48 -2.39 -0.01 3.04 16 15 C -0.14 -3.68 4.28 30.22 0.13 -3.56 16 16 C -0.11 -1.90 5.09 28.86 0.15 -1.75 16 17 C -0.12 -1.73 5.30 28.85 0.15 -1.58 16 18 C -0.12 -1.95 5.63 30.21 0.17 -1.78 16 19 C 0.06 1.38 6.01 85.27 0.51 1.90 16 20 N -0.70 -21.08 6.65 -498.54 -3.31 -24.40 16 21 C 0.05 1.72 5.42 44.99 0.24 1.96 16 22 C -0.18 -5.67 9.72 30.59 0.30 -5.38 16 23 C -0.18 -4.99 10.13 30.59 0.31 -4.68 16 24 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 25 H 0.03 1.48 6.32 -2.38 -0.02 1.46 16 26 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 27 H 0.06 1.71 7.08 -2.39 -0.02 1.69 16 28 H 0.06 1.78 7.25 -2.39 -0.02 1.76 16 29 H 0.08 1.16 6.85 -2.39 -0.02 1.15 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.88 7.52 -2.39 -0.02 0.87 16 33 H 0.07 1.24 7.09 -2.39 -0.02 1.22 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.03 0.63 6.59 -2.39 -0.02 0.62 16 37 H 0.34 12.03 7.55 -89.70 -0.68 11.35 16 38 H 0.15 3.80 5.07 -2.39 -0.01 3.79 16 39 H 0.07 3.08 6.29 -2.39 -0.02 3.07 16 40 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 Total: -1.00 -73.65 321.52 0.74 -72.91 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.34 Total: 24.37 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 3.69 Total: -4.09 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -5.27 Total: -108.64 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.65 0.74 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080997429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.484 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds