Wall clock time and date at job start Mon Mar 30 2020 04:40:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1
6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2
11 11 C 1.34780 * 119.99807 * 89.99947 * 10 9 7
12 12 O 1.21283 * 120.00111 * 0.02562 * 11 10 9
13 13 C 1.50707 * 120.00018 * 179.97438 * 11 10 9
14 14 H 1.09008 * 109.46644 * 60.00137 * 13 11 10
15 15 C 1.52992 * 109.47047 * 300.00516 * 13 11 10
16 16 C 1.53000 * 109.47028 * 299.99453 * 15 13 11
17 17 C 1.52997 * 109.47168 * 300.00219 * 16 15 13
18 18 C 1.52997 * 109.47131 * 60.00248 * 17 16 15
19 19 C 1.52994 * 109.47057 * 180.02562 * 13 11 10
20 20 H 1.09005 * 109.46941 * 180.02562 * 19 13 11
21 21 N 1.46896 * 109.47289 * 299.99945 * 19 13 11
22 22 C 1.46497 * 120.00160 * 270.00206 * 10 9 7
23 23 C 1.52992 * 117.49855 * 8.61727 * 22 10 9
24 24 C 1.52992 * 60.00328 * 252.51089 * 23 22 10
25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2
27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2
28 28 H 1.09004 * 109.47759 * 59.99470 * 15 13 11
29 29 H 1.09005 * 109.47030 * 179.97438 * 15 13 11
30 30 H 1.09003 * 109.47470 * 180.02562 * 16 15 13
31 31 H 1.08997 * 109.47422 * 60.00625 * 16 15 13
32 32 H 1.08995 * 109.47286 * 299.99943 * 17 16 15
33 33 H 1.09008 * 109.47223 * 180.02562 * 17 16 15
34 34 H 1.08994 * 109.47472 * 180.02562 * 18 17 16
35 35 H 1.08995 * 109.47285 * 59.99694 * 18 17 16
36 36 H 1.00905 * 111.00430 * 180.02562 * 21 19 13
37 37 H 1.00897 * 111.00439 * 303.95678 * 21 19 13
38 38 H 1.09006 * 115.54934 * 154.33151 * 22 10 9
39 39 H 1.09003 * 117.49996 * 0.02562 * 23 22 10
40 40 H 1.09004 * 117.50305 * 145.02061 * 23 22 10
41 41 H 1.08996 * 117.50349 * 252.50666 * 24 23 22
42 42 H 1.09000 * 117.49714 * 107.49008 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 2.6409 -4.1249 1.1667
12 8 2.2465 -3.6642 2.2170
13 6 3.6198 -5.2708 1.1668
14 1 4.5324 -4.9690 0.6527
15 6 3.0011 -6.4700 0.4458
16 6 1.7201 -6.8936 1.1673
17 6 2.0516 -7.2811 2.6097
18 6 2.6702 -6.0819 3.3308
19 6 3.9507 -5.6587 2.6092
20 1 4.6591 -6.4872 2.6093
21 7 4.5445 -4.5075 3.3020
22 6 2.6790 -4.1694 -1.2692
23 6 2.3081 -3.4225 -2.5519
24 6 1.6334 -4.7550 -2.2203
25 1 -0.4850 0.8401 0.0004
26 1 0.6247 -2.5571 0.8897
27 1 0.6240 -2.5568 -0.8903
28 1 2.7649 -6.1939 -0.5819
29 1 3.7093 -7.2986 0.4454
30 1 1.2795 -7.7482 0.6539
31 1 1.0121 -6.0649 1.1672
32 1 2.7596 -8.1099 2.6097
33 1 1.1390 -7.5834 3.1237
34 1 2.9068 -6.3581 4.3582
35 1 1.9622 -5.2531 3.3307
36 1 4.7726 -4.7385 4.2574
37 1 5.3566 -4.1680 2.8087
38 1 3.6544 -4.6548 -1.2331
39 1 1.7102 -2.5166 -2.4518
40 1 3.0395 -3.4161 -3.3601
41 1 1.9208 -5.6253 -2.8102
42 1 0.5913 -4.7260 -1.9021
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085369722.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:42
Heat of formation + Delta-G solvation = -11.305286 kcal
Electronic energy + Delta-G solvation = -21999.483092 eV
Core-core repulsion = 18980.007840 eV
Total energy + Delta-G solvation = -3019.475252 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.16494 -37.54822 -36.16710 -33.36401 -33.07160 -31.96762 -30.79201 -27.97636
-27.06142 -23.54382 -22.82866 -21.98945 -21.48446 -21.36390 -19.88843 -17.87922
-16.39587 -16.20070 -15.61014 -15.38646 -14.84976 -14.69828 -14.43676 -14.20575
-13.78495 -13.44502 -13.11297 -12.56310 -12.22723 -12.18342 -11.85198 -11.76009
-11.58782 -11.32572 -10.92792 -10.92055 -10.75017 -10.57375 -10.43907 -10.40518
-10.08621 -10.03062 -9.99890 -9.77804 -9.40312 -8.55140 -8.35609 -8.10499
-7.34363 -5.96329 -3.99920 3.36711 3.40884 3.44444 3.59929 3.97566
4.43626 4.53425 4.62778 4.83864 4.92448 5.21560 5.26044 5.29650
5.37376 5.38030 5.41757 5.51725 5.53708 5.60803 5.65543 5.71679
5.89475 5.99556 6.04117 6.10297 6.23202 6.28986 6.36914 6.43119
6.46528 6.50482 6.79765 6.89703 7.17982 7.50395 7.55526 7.69881
7.75296 8.01452 8.33473 8.61534 9.01511 9.35470 9.65154 11.11296
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.020515 B = 0.006955 C = 0.005953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1364.540656 B = 4024.687459 C = 4702.452149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.060 3.940
3 Si 0.895 3.105
4 H -0.288 1.288
5 H -0.277 1.277
6 H -0.278 1.278
7 C -0.516 4.516
8 H 0.056 0.944
9 C 0.248 3.752
10 N -0.576 5.576
11 C 0.522 3.478
12 O -0.505 6.505
13 C -0.105 4.105
14 H 0.081 0.919
15 C -0.119 4.119
16 C -0.120 4.120
17 C -0.115 4.115
18 C -0.128 4.128
19 C 0.120 3.880
20 H 0.026 0.974
21 N -0.828 5.828
22 C 0.082 3.918
23 C -0.178 4.178
24 C -0.205 4.205
25 H 0.262 0.738
26 H 0.041 0.959
27 H 0.030 0.970
28 H 0.084 0.916
29 H 0.062 0.938
30 H 0.059 0.941
31 H 0.067 0.933
32 H 0.052 0.948
33 H 0.059 0.941
34 H 0.050 0.950
35 H 0.106 0.894
36 H 0.335 0.665
37 H 0.334 0.666
38 H 0.113 0.887
39 H 0.118 0.882
40 H 0.090 0.910
41 H 0.090 0.910
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.217 -15.010 -0.938 16.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.141 4.141
3 Si 0.723 3.277
4 H -0.213 1.213
5 H -0.202 1.202
6 H -0.204 1.204
7 C -0.555 4.555
8 H 0.074 0.926
9 C 0.129 3.871
10 N -0.307 5.307
11 C 0.308 3.692
12 O -0.379 6.379
13 C -0.127 4.127
14 H 0.099 0.901
15 C -0.157 4.157
16 C -0.157 4.157
17 C -0.153 4.153
18 C -0.165 4.165
19 C 0.008 3.992
20 H 0.044 0.956
21 N -0.357 5.357
22 C -0.025 4.025
23 C -0.216 4.216
24 C -0.244 4.244
25 H 0.072 0.928
26 H 0.059 0.941
27 H 0.048 0.952
28 H 0.102 0.898
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.071 0.929
33 H 0.078 0.922
34 H 0.068 0.932
35 H 0.124 0.876
36 H 0.147 0.853
37 H 0.146 0.854
38 H 0.131 0.869
39 H 0.136 0.864
40 H 0.108 0.892
41 H 0.108 0.892
42 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 6.126 -14.244 -0.467 15.512
hybrid contribution 1.471 0.368 -0.088 1.519
sum 7.598 -13.876 -0.555 15.829
Atomic orbital electron populations
1.69926 1.05935 1.26917 1.50897 1.24916 0.94825 0.99056 0.95331
0.86602 0.79537 0.82968 0.78562 1.21320 1.20238 1.20371 1.21382
0.93263 0.90575 1.50292 0.92606 1.19197 0.87579 0.82292 0.98048
1.47735 1.45548 1.34615 1.02851 1.19840 0.82206 0.83393 0.83715
1.90621 1.56798 1.60405 1.30103 1.21420 0.98973 0.95573 0.96783
0.90056 1.21741 0.97292 0.96298 1.00335 1.21519 0.97638 1.01187
0.95389 1.21505 1.00161 0.97663 0.95973 1.21831 0.98227 0.99287
0.97203 1.20970 0.95461 0.90353 0.92368 0.95610 1.58487 1.35820
1.35990 1.05430 1.21441 0.96472 1.01494 0.83075 1.23363 1.03666
0.97022 0.97542 1.23410 0.99417 0.97171 1.04424 0.92821 0.94085
0.95165 0.89809 0.91975 0.92193 0.91423 0.92885 0.92202 0.93162
0.87597 0.85284 0.85419 0.86925 0.86412 0.89172 0.89184 0.88781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16
4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.52 -14.71 9.19 -34.44 -0.32 -15.02 16
8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16
9 C 0.25 6.49 4.46 -5.20 -0.02 6.46 16
10 N -0.58 -12.22 2.79 -167.47 -0.47 -12.69 16
11 C 0.52 10.80 5.39 -10.98 -0.06 10.74 16
12 O -0.50 -12.49 12.46 5.56 0.07 -12.42 16
13 C -0.11 -1.62 1.88 -91.77 -0.17 -1.79 16
14 H 0.08 1.16 7.57 -51.92 -0.39 0.77 16
15 C -0.12 -1.51 5.08 -26.73 -0.14 -1.65 16
16 C -0.12 -1.60 5.70 -26.73 -0.15 -1.76 16
17 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16
18 C -0.13 -1.92 5.20 -26.76 -0.14 -2.06 16
19 C 0.12 1.73 2.84 -67.74 -0.19 1.54 16
20 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
21 N -0.83 -12.52 8.04 -4.69 -0.04 -12.56 16
22 C 0.08 1.37 4.33 -67.94 -0.29 1.07 16
23 C -0.18 -2.97 9.72 -26.74 -0.26 -3.23 16
24 C -0.21 -3.02 9.30 -26.74 -0.25 -3.27 16
25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
26 H 0.04 1.23 7.42 -51.92 -0.39 0.84 16
27 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16
28 H 0.08 1.05 4.41 -51.93 -0.23 0.82 16
29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.07 1.12 7.22 -51.93 -0.37 0.74 16
32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16
34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.11 2.04 5.51 -51.93 -0.29 1.75 16
36 H 0.33 4.30 9.04 -39.29 -0.36 3.94 16
37 H 0.33 4.59 8.99 -39.29 -0.35 4.23 16
38 H 0.11 1.60 6.17 -51.93 -0.32 1.28 16
39 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16
40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
42 H 0.09 1.53 8.12 -51.93 -0.42 1.11 16
LS Contribution 320.23 15.07 4.83 4.83
Total: -1.00 -32.38 320.23 -8.85 -41.22
By element:
Atomic # 1 Polarization: 16.18 SS G_CDS: -6.70 Total: 9.48 kcal
Atomic # 6 Polarization: -6.70 SS G_CDS: -2.25 Total: -8.94 kcal
Atomic # 7 Polarization: -51.63 SS G_CDS: 0.23 Total: -51.40 kcal
Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -32.38 -8.85 -41.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085369722.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.915 kcal
(2) G-P(sol) polarization free energy of solvation -32.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds