Wall clock time and date at job start Mon Mar 30 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99807 * 89.99947 * 10 9 7 12 12 O 1.21283 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00018 * 179.97438 * 11 10 9 14 14 H 1.09008 * 109.46644 * 60.00137 * 13 11 10 15 15 C 1.52992 * 109.47047 * 300.00516 * 13 11 10 16 16 C 1.53000 * 109.47028 * 299.99453 * 15 13 11 17 17 C 1.52997 * 109.47168 * 300.00219 * 16 15 13 18 18 C 1.52997 * 109.47131 * 60.00248 * 17 16 15 19 19 C 1.52994 * 109.47057 * 180.02562 * 13 11 10 20 20 H 1.09005 * 109.46941 * 180.02562 * 19 13 11 21 21 N 1.46896 * 109.47289 * 299.99945 * 19 13 11 22 22 C 1.46497 * 120.00160 * 270.00206 * 10 9 7 23 23 C 1.52992 * 117.49855 * 8.61727 * 22 10 9 24 24 C 1.52992 * 60.00328 * 252.51089 * 23 22 10 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09004 * 109.47759 * 59.99470 * 15 13 11 29 29 H 1.09005 * 109.47030 * 179.97438 * 15 13 11 30 30 H 1.09003 * 109.47470 * 180.02562 * 16 15 13 31 31 H 1.08997 * 109.47422 * 60.00625 * 16 15 13 32 32 H 1.08995 * 109.47286 * 299.99943 * 17 16 15 33 33 H 1.09008 * 109.47223 * 180.02562 * 17 16 15 34 34 H 1.08994 * 109.47472 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.47285 * 59.99694 * 18 17 16 36 36 H 1.00905 * 111.00430 * 180.02562 * 21 19 13 37 37 H 1.00897 * 111.00439 * 303.95678 * 21 19 13 38 38 H 1.09006 * 115.54934 * 154.33151 * 22 10 9 39 39 H 1.09003 * 117.49996 * 0.02562 * 23 22 10 40 40 H 1.09004 * 117.50305 * 145.02061 * 23 22 10 41 41 H 1.08996 * 117.50349 * 252.50666 * 24 23 22 42 42 H 1.09000 * 117.49714 * 107.49008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6409 -4.1249 1.1667 12 8 2.2465 -3.6642 2.2170 13 6 3.6198 -5.2708 1.1668 14 1 4.5324 -4.9690 0.6527 15 6 3.0011 -6.4700 0.4458 16 6 1.7201 -6.8936 1.1673 17 6 2.0516 -7.2811 2.6097 18 6 2.6702 -6.0819 3.3308 19 6 3.9507 -5.6587 2.6092 20 1 4.6591 -6.4872 2.6093 21 7 4.5445 -4.5075 3.3020 22 6 2.6790 -4.1694 -1.2692 23 6 2.3081 -3.4225 -2.5519 24 6 1.6334 -4.7550 -2.2203 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.7649 -6.1939 -0.5819 29 1 3.7093 -7.2986 0.4454 30 1 1.2795 -7.7482 0.6539 31 1 1.0121 -6.0649 1.1672 32 1 2.7596 -8.1099 2.6097 33 1 1.1390 -7.5834 3.1237 34 1 2.9068 -6.3581 4.3582 35 1 1.9622 -5.2531 3.3307 36 1 4.7726 -4.7385 4.2574 37 1 5.3566 -4.1680 2.8087 38 1 3.6544 -4.6548 -1.2331 39 1 1.7102 -2.5166 -2.4518 40 1 3.0395 -3.4161 -3.3601 41 1 1.9208 -5.6253 -2.8102 42 1 0.5913 -4.7260 -1.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085369722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:42 Heat of formation + Delta-G solvation = -11.305286 kcal Electronic energy + Delta-G solvation = -21999.483092 eV Core-core repulsion = 18980.007840 eV Total energy + Delta-G solvation = -3019.475252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16494 -37.54822 -36.16710 -33.36401 -33.07160 -31.96762 -30.79201 -27.97636 -27.06142 -23.54382 -22.82866 -21.98945 -21.48446 -21.36390 -19.88843 -17.87922 -16.39587 -16.20070 -15.61014 -15.38646 -14.84976 -14.69828 -14.43676 -14.20575 -13.78495 -13.44502 -13.11297 -12.56310 -12.22723 -12.18342 -11.85198 -11.76009 -11.58782 -11.32572 -10.92792 -10.92055 -10.75017 -10.57375 -10.43907 -10.40518 -10.08621 -10.03062 -9.99890 -9.77804 -9.40312 -8.55140 -8.35609 -8.10499 -7.34363 -5.96329 -3.99920 3.36711 3.40884 3.44444 3.59929 3.97566 4.43626 4.53425 4.62778 4.83864 4.92448 5.21560 5.26044 5.29650 5.37376 5.38030 5.41757 5.51725 5.53708 5.60803 5.65543 5.71679 5.89475 5.99556 6.04117 6.10297 6.23202 6.28986 6.36914 6.43119 6.46528 6.50482 6.79765 6.89703 7.17982 7.50395 7.55526 7.69881 7.75296 8.01452 8.33473 8.61534 9.01511 9.35470 9.65154 11.11296 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.006955 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.540656 B = 4024.687459 C = 4702.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.248 3.752 10 N -0.576 5.576 11 C 0.522 3.478 12 O -0.505 6.505 13 C -0.105 4.105 14 H 0.081 0.919 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.120 3.880 20 H 0.026 0.974 21 N -0.828 5.828 22 C 0.082 3.918 23 C -0.178 4.178 24 C -0.205 4.205 25 H 0.262 0.738 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.335 0.665 37 H 0.334 0.666 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -15.010 -0.938 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.129 3.871 10 N -0.307 5.307 11 C 0.308 3.692 12 O -0.379 6.379 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.165 4.165 19 C 0.008 3.992 20 H 0.044 0.956 21 N -0.357 5.357 22 C -0.025 4.025 23 C -0.216 4.216 24 C -0.244 4.244 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.126 -14.244 -0.467 15.512 hybrid contribution 1.471 0.368 -0.088 1.519 sum 7.598 -13.876 -0.555 15.829 Atomic orbital electron populations 1.69926 1.05935 1.26917 1.50897 1.24916 0.94825 0.99056 0.95331 0.86602 0.79537 0.82968 0.78562 1.21320 1.20238 1.20371 1.21382 0.93263 0.90575 1.50292 0.92606 1.19197 0.87579 0.82292 0.98048 1.47735 1.45548 1.34615 1.02851 1.19840 0.82206 0.83393 0.83715 1.90621 1.56798 1.60405 1.30103 1.21420 0.98973 0.95573 0.96783 0.90056 1.21741 0.97292 0.96298 1.00335 1.21519 0.97638 1.01187 0.95389 1.21505 1.00161 0.97663 0.95973 1.21831 0.98227 0.99287 0.97203 1.20970 0.95461 0.90353 0.92368 0.95610 1.58487 1.35820 1.35990 1.05430 1.21441 0.96472 1.01494 0.83075 1.23363 1.03666 0.97022 0.97542 1.23410 0.99417 0.97171 1.04424 0.92821 0.94085 0.95165 0.89809 0.91975 0.92193 0.91423 0.92885 0.92202 0.93162 0.87597 0.85284 0.85419 0.86925 0.86412 0.89172 0.89184 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.71 9.19 -34.44 -0.32 -15.02 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.25 6.49 4.46 -5.20 -0.02 6.46 16 10 N -0.58 -12.22 2.79 -167.47 -0.47 -12.69 16 11 C 0.52 10.80 5.39 -10.98 -0.06 10.74 16 12 O -0.50 -12.49 12.46 5.56 0.07 -12.42 16 13 C -0.11 -1.62 1.88 -91.77 -0.17 -1.79 16 14 H 0.08 1.16 7.57 -51.92 -0.39 0.77 16 15 C -0.12 -1.51 5.08 -26.73 -0.14 -1.65 16 16 C -0.12 -1.60 5.70 -26.73 -0.15 -1.76 16 17 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 18 C -0.13 -1.92 5.20 -26.76 -0.14 -2.06 16 19 C 0.12 1.73 2.84 -67.74 -0.19 1.54 16 20 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 21 N -0.83 -12.52 8.04 -4.69 -0.04 -12.56 16 22 C 0.08 1.37 4.33 -67.94 -0.29 1.07 16 23 C -0.18 -2.97 9.72 -26.74 -0.26 -3.23 16 24 C -0.21 -3.02 9.30 -26.74 -0.25 -3.27 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.04 1.23 7.42 -51.92 -0.39 0.84 16 27 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16 28 H 0.08 1.05 4.41 -51.93 -0.23 0.82 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.12 7.22 -51.93 -0.37 0.74 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 2.04 5.51 -51.93 -0.29 1.75 16 36 H 0.33 4.30 9.04 -39.29 -0.36 3.94 16 37 H 0.33 4.59 8.99 -39.29 -0.35 4.23 16 38 H 0.11 1.60 6.17 -51.93 -0.32 1.28 16 39 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.53 8.12 -51.93 -0.42 1.11 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -32.38 320.23 -8.85 -41.22 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.70 Total: 9.48 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.25 Total: -8.94 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.23 Total: -51.40 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.38 -8.85 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.915 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds