Wall clock time and date at job start Mon Mar 30 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99807 * 89.99947 * 10 9 7 12 12 O 1.21283 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00018 * 179.97438 * 11 10 9 14 14 H 1.09008 * 109.46644 * 60.00137 * 13 11 10 15 15 C 1.52992 * 109.47047 * 300.00516 * 13 11 10 16 16 C 1.53000 * 109.47028 * 299.99453 * 15 13 11 17 17 C 1.52997 * 109.47168 * 300.00219 * 16 15 13 18 18 C 1.52997 * 109.47131 * 60.00248 * 17 16 15 19 19 C 1.52994 * 109.47057 * 180.02562 * 13 11 10 20 20 H 1.09005 * 109.46941 * 180.02562 * 19 13 11 21 21 N 1.46896 * 109.47289 * 299.99945 * 19 13 11 22 22 C 1.46497 * 120.00160 * 270.00206 * 10 9 7 23 23 C 1.52992 * 117.49855 * 8.61727 * 22 10 9 24 24 C 1.52992 * 60.00328 * 252.51089 * 23 22 10 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09004 * 109.47759 * 59.99470 * 15 13 11 29 29 H 1.09005 * 109.47030 * 179.97438 * 15 13 11 30 30 H 1.09003 * 109.47470 * 180.02562 * 16 15 13 31 31 H 1.08997 * 109.47422 * 60.00625 * 16 15 13 32 32 H 1.08995 * 109.47286 * 299.99943 * 17 16 15 33 33 H 1.09008 * 109.47223 * 180.02562 * 17 16 15 34 34 H 1.08994 * 109.47472 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.47285 * 59.99694 * 18 17 16 36 36 H 1.00905 * 111.00430 * 180.02562 * 21 19 13 37 37 H 1.00897 * 111.00439 * 303.95678 * 21 19 13 38 38 H 1.09006 * 115.54934 * 154.33151 * 22 10 9 39 39 H 1.09003 * 117.49996 * 0.02562 * 23 22 10 40 40 H 1.09004 * 117.50305 * 145.02061 * 23 22 10 41 41 H 1.08996 * 117.50349 * 252.50666 * 24 23 22 42 42 H 1.09000 * 117.49714 * 107.49008 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6409 -4.1249 1.1667 12 8 2.2465 -3.6642 2.2170 13 6 3.6198 -5.2708 1.1668 14 1 4.5324 -4.9690 0.6527 15 6 3.0011 -6.4700 0.4458 16 6 1.7201 -6.8936 1.1673 17 6 2.0516 -7.2811 2.6097 18 6 2.6702 -6.0819 3.3308 19 6 3.9507 -5.6587 2.6092 20 1 4.6591 -6.4872 2.6093 21 7 4.5445 -4.5075 3.3020 22 6 2.6790 -4.1694 -1.2692 23 6 2.3081 -3.4225 -2.5519 24 6 1.6334 -4.7550 -2.2203 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.7649 -6.1939 -0.5819 29 1 3.7093 -7.2986 0.4454 30 1 1.2795 -7.7482 0.6539 31 1 1.0121 -6.0649 1.1672 32 1 2.7596 -8.1099 2.6097 33 1 1.1390 -7.5834 3.1237 34 1 2.9068 -6.3581 4.3582 35 1 1.9622 -5.2531 3.3307 36 1 4.7726 -4.7385 4.2574 37 1 5.3566 -4.1680 2.8087 38 1 3.6544 -4.6548 -1.2331 39 1 1.7102 -2.5166 -2.4518 40 1 3.0395 -3.4161 -3.3601 41 1 1.9208 -5.6253 -2.8102 42 1 0.5913 -4.7260 -1.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085369722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:42 Heat of formation + Delta-G solvation = -34.118613 kcal Electronic energy + Delta-G solvation = -22000.472352 eV Core-core repulsion = 18980.007840 eV Total energy + Delta-G solvation = -3020.464512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55600 -38.89688 -37.65819 -35.16597 -34.45538 -33.63932 -32.13625 -29.38296 -28.80205 -25.36041 -24.24574 -23.27421 -22.73143 -22.58753 -21.21720 -19.41380 -18.52570 -17.65457 -17.07845 -16.69796 -16.41400 -15.98600 -15.85589 -15.64457 -15.17025 -14.76447 -14.55047 -14.20296 -13.68097 -13.43649 -13.38205 -13.19507 -13.03107 -12.80375 -12.66737 -12.60961 -12.18089 -12.16282 -12.07791 -11.91413 -11.57725 -11.45228 -11.26606 -11.20864 -10.84501 -10.61940 -10.07691 -9.26553 -9.07012 -8.18032 -6.32688 1.34522 1.39347 1.46315 2.07020 2.32699 2.49353 3.09483 3.14626 3.51856 3.74061 3.77064 3.97958 4.07669 4.11357 4.19551 4.26080 4.33080 4.42266 4.54515 4.59210 4.62152 4.81938 4.88096 4.99154 5.00479 5.07280 5.08612 5.20801 5.26534 5.29318 5.32170 5.37920 5.42506 5.44520 5.60655 5.71509 5.96715 6.12703 6.47595 6.73281 6.76164 7.01182 7.33897 7.77725 8.87315 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.006955 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.540656 B = 4024.687459 C = 4702.452149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.049 0.951 9 C 0.270 3.730 10 N -0.585 5.585 11 C 0.512 3.488 12 O -0.559 6.559 13 C -0.097 4.097 14 H 0.101 0.899 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.120 3.880 20 H 0.065 0.935 21 N -0.855 5.855 22 C 0.067 3.933 23 C -0.190 4.190 24 C -0.178 4.178 25 H 0.265 0.735 26 H -0.013 1.013 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.020 0.980 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.344 0.656 37 H 0.340 0.660 38 H 0.152 0.848 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -17.375 -2.408 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.067 0.933 9 C 0.149 3.851 10 N -0.316 5.316 11 C 0.301 3.699 12 O -0.436 6.436 13 C -0.118 4.118 14 H 0.119 0.881 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.166 4.166 19 C 0.009 3.991 20 H 0.082 0.918 21 N -0.386 5.386 22 C -0.038 4.038 23 C -0.227 4.227 24 C -0.217 4.217 25 H 0.074 0.926 26 H 0.005 0.995 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.979 -16.642 -1.969 19.012 hybrid contribution 0.513 1.095 0.407 1.276 sum 9.492 -15.547 -1.563 18.282 Atomic orbital electron populations 1.70056 1.07534 1.27949 1.51614 1.25828 0.95736 1.02896 0.94772 0.85530 0.78350 0.78411 0.78891 1.20415 1.20536 1.18456 1.21601 0.92926 0.91877 1.50198 0.93313 1.18514 0.87956 0.83960 0.94682 1.47714 1.44890 1.33604 1.05403 1.20950 0.82246 0.84174 0.82492 1.90607 1.58750 1.62299 1.31994 1.21482 0.97777 0.94140 0.98425 0.88089 1.21788 0.97392 0.96140 0.99756 1.21525 0.97405 1.00389 0.96496 1.21491 1.00812 0.97386 0.95084 1.21761 0.97760 0.98548 0.98576 1.21050 0.95569 0.91108 0.91369 0.91751 1.58455 1.36482 1.37232 1.06444 1.21915 0.98701 1.02226 0.80929 1.23322 1.04508 0.96157 0.98748 1.23437 0.97611 0.97681 1.02971 0.92615 0.99533 0.96434 0.89352 0.87799 0.89668 0.96152 0.89523 0.92354 0.92206 0.92858 0.84190 0.84713 0.83071 0.91164 0.85721 0.84406 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 46.63 29.54 68.60 2.03 48.65 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -31.44 9.19 25.60 0.24 -31.20 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.27 15.16 4.46 85.63 0.38 15.55 16 10 N -0.59 -25.63 2.79 -802.15 -2.24 -27.87 16 11 C 0.51 21.73 5.39 87.66 0.47 22.20 16 12 O -0.56 -29.50 12.46 -3.04 -0.04 -29.54 16 13 C -0.10 -2.74 1.88 -11.54 -0.02 -2.76 16 14 H 0.10 2.50 7.57 -2.38 -0.02 2.48 16 15 C -0.11 -2.43 5.08 30.59 0.16 -2.27 16 16 C -0.12 -2.99 5.70 30.59 0.17 -2.82 16 17 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 18 C -0.13 -3.79 5.20 30.58 0.16 -3.63 16 19 C 0.12 3.19 2.84 44.90 0.13 3.32 16 20 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 21 N -0.85 -25.21 8.04 -168.76 -1.36 -26.57 16 22 C 0.07 2.13 4.33 44.99 0.19 2.33 16 23 C -0.19 -6.13 9.72 30.59 0.30 -5.83 16 24 C -0.18 -4.89 9.30 30.59 0.28 -4.61 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H -0.01 -0.88 7.42 -2.38 -0.02 -0.90 16 27 H 0.02 1.02 6.33 -2.39 -0.02 1.00 16 28 H 0.09 1.83 4.41 -2.39 -0.01 1.82 16 29 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.02 0.68 7.22 -2.39 -0.02 0.66 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 2.18 5.51 -2.39 -0.01 2.17 16 36 H 0.34 8.60 9.04 -89.69 -0.81 7.79 16 37 H 0.34 8.91 8.99 -89.70 -0.81 8.11 16 38 H 0.15 3.66 6.17 -2.38 -0.01 3.65 16 39 H 0.07 2.98 6.29 -2.39 -0.02 2.97 16 40 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 Total: -1.00 -78.04 320.23 1.19 -76.84 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.59 Total: 27.79 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 3.10 Total: -11.28 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -3.31 Total: -112.46 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.04 Total: -29.54 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.04 1.19 -76.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal (2) G-P(sol) polarization free energy of solvation -78.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds