Wall clock time and date at job start Mon Mar 30 2020 04:40:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1
6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2
11 11 C 1.34780 * 119.99807 * 89.99947 * 10 9 7
12 12 O 1.21283 * 120.00111 * 0.02562 * 11 10 9
13 13 C 1.50707 * 120.00018 * 179.97438 * 11 10 9
14 14 H 1.09008 * 109.46644 * 60.00137 * 13 11 10
15 15 C 1.52992 * 109.47047 * 300.00516 * 13 11 10
16 16 C 1.53000 * 109.47028 * 299.99453 * 15 13 11
17 17 C 1.52997 * 109.47168 * 300.00219 * 16 15 13
18 18 C 1.52997 * 109.47131 * 60.00248 * 17 16 15
19 19 C 1.52994 * 109.47057 * 180.02562 * 13 11 10
20 20 H 1.09005 * 109.46941 * 180.02562 * 19 13 11
21 21 N 1.46896 * 109.47289 * 299.99945 * 19 13 11
22 22 C 1.46497 * 120.00160 * 270.00206 * 10 9 7
23 23 C 1.52992 * 117.49855 * 8.61727 * 22 10 9
24 24 C 1.52992 * 60.00328 * 252.51089 * 23 22 10
25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2
27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2
28 28 H 1.09004 * 109.47759 * 59.99470 * 15 13 11
29 29 H 1.09005 * 109.47030 * 179.97438 * 15 13 11
30 30 H 1.09003 * 109.47470 * 180.02562 * 16 15 13
31 31 H 1.08997 * 109.47422 * 60.00625 * 16 15 13
32 32 H 1.08995 * 109.47286 * 299.99943 * 17 16 15
33 33 H 1.09008 * 109.47223 * 180.02562 * 17 16 15
34 34 H 1.08994 * 109.47472 * 180.02562 * 18 17 16
35 35 H 1.08995 * 109.47285 * 59.99694 * 18 17 16
36 36 H 1.00905 * 111.00430 * 180.02562 * 21 19 13
37 37 H 1.00897 * 111.00439 * 303.95678 * 21 19 13
38 38 H 1.09006 * 115.54934 * 154.33151 * 22 10 9
39 39 H 1.09003 * 117.49996 * 0.02562 * 23 22 10
40 40 H 1.09004 * 117.50305 * 145.02061 * 23 22 10
41 41 H 1.08996 * 117.50349 * 252.50666 * 24 23 22
42 42 H 1.09000 * 117.49714 * 107.49008 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 2.6409 -4.1249 1.1667
12 8 2.2465 -3.6642 2.2170
13 6 3.6198 -5.2708 1.1668
14 1 4.5324 -4.9690 0.6527
15 6 3.0011 -6.4700 0.4458
16 6 1.7201 -6.8936 1.1673
17 6 2.0516 -7.2811 2.6097
18 6 2.6702 -6.0819 3.3308
19 6 3.9507 -5.6587 2.6092
20 1 4.6591 -6.4872 2.6093
21 7 4.5445 -4.5075 3.3020
22 6 2.6790 -4.1694 -1.2692
23 6 2.3081 -3.4225 -2.5519
24 6 1.6334 -4.7550 -2.2203
25 1 -0.4850 0.8401 0.0004
26 1 0.6247 -2.5571 0.8897
27 1 0.6240 -2.5568 -0.8903
28 1 2.7649 -6.1939 -0.5819
29 1 3.7093 -7.2986 0.4454
30 1 1.2795 -7.7482 0.6539
31 1 1.0121 -6.0649 1.1672
32 1 2.7596 -8.1099 2.6097
33 1 1.1390 -7.5834 3.1237
34 1 2.9068 -6.3581 4.3582
35 1 1.9622 -5.2531 3.3307
36 1 4.7726 -4.7385 4.2574
37 1 5.3566 -4.1680 2.8087
38 1 3.6544 -4.6548 -1.2331
39 1 1.7102 -2.5166 -2.4518
40 1 3.0395 -3.4161 -3.3601
41 1 1.9208 -5.6253 -2.8102
42 1 0.5913 -4.7260 -1.9021
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085369722.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:42
Heat of formation + Delta-G solvation = -34.118613 kcal
Electronic energy + Delta-G solvation = -22000.472352 eV
Core-core repulsion = 18980.007840 eV
Total energy + Delta-G solvation = -3020.464512 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.55600 -38.89688 -37.65819 -35.16597 -34.45538 -33.63932 -32.13625 -29.38296
-28.80205 -25.36041 -24.24574 -23.27421 -22.73143 -22.58753 -21.21720 -19.41380
-18.52570 -17.65457 -17.07845 -16.69796 -16.41400 -15.98600 -15.85589 -15.64457
-15.17025 -14.76447 -14.55047 -14.20296 -13.68097 -13.43649 -13.38205 -13.19507
-13.03107 -12.80375 -12.66737 -12.60961 -12.18089 -12.16282 -12.07791 -11.91413
-11.57725 -11.45228 -11.26606 -11.20864 -10.84501 -10.61940 -10.07691 -9.26553
-9.07012 -8.18032 -6.32688 1.34522 1.39347 1.46315 2.07020 2.32699
2.49353 3.09483 3.14626 3.51856 3.74061 3.77064 3.97958 4.07669
4.11357 4.19551 4.26080 4.33080 4.42266 4.54515 4.59210 4.62152
4.81938 4.88096 4.99154 5.00479 5.07280 5.08612 5.20801 5.26534
5.29318 5.32170 5.37920 5.42506 5.44520 5.60655 5.71509 5.96715
6.12703 6.47595 6.73281 6.76164 7.01182 7.33897 7.77725 8.87315
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.020515 B = 0.006955 C = 0.005953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1364.540656 B = 4024.687459 C = 4702.452149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.006 3.994
3 Si 0.964 3.036
4 H -0.279 1.279
5 H -0.280 1.280
6 H -0.260 1.260
7 C -0.527 4.527
8 H 0.049 0.951
9 C 0.270 3.730
10 N -0.585 5.585
11 C 0.512 3.488
12 O -0.559 6.559
13 C -0.097 4.097
14 H 0.101 0.899
15 C -0.113 4.113
16 C -0.121 4.121
17 C -0.110 4.110
18 C -0.129 4.129
19 C 0.120 3.880
20 H 0.065 0.935
21 N -0.855 5.855
22 C 0.067 3.933
23 C -0.190 4.190
24 C -0.178 4.178
25 H 0.265 0.735
26 H -0.013 1.013
27 H 0.018 0.982
28 H 0.088 0.912
29 H 0.104 0.896
30 H 0.085 0.915
31 H 0.020 0.980
32 H 0.086 0.914
33 H 0.058 0.942
34 H 0.059 0.941
35 H 0.053 0.947
36 H 0.344 0.656
37 H 0.340 0.660
38 H 0.152 0.848
39 H 0.070 0.930
40 H 0.125 0.875
41 H 0.138 0.862
42 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.049 -17.375 -2.408 20.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.192 4.192
3 Si 0.788 3.212
4 H -0.204 1.204
5 H -0.205 1.205
6 H -0.185 1.185
7 C -0.566 4.566
8 H 0.067 0.933
9 C 0.149 3.851
10 N -0.316 5.316
11 C 0.301 3.699
12 O -0.436 6.436
13 C -0.118 4.118
14 H 0.119 0.881
15 C -0.151 4.151
16 C -0.158 4.158
17 C -0.148 4.148
18 C -0.166 4.166
19 C 0.009 3.991
20 H 0.082 0.918
21 N -0.386 5.386
22 C -0.038 4.038
23 C -0.227 4.227
24 C -0.217 4.217
25 H 0.074 0.926
26 H 0.005 0.995
27 H 0.036 0.964
28 H 0.106 0.894
29 H 0.122 0.878
30 H 0.103 0.897
31 H 0.038 0.962
32 H 0.105 0.895
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.071 0.929
36 H 0.158 0.842
37 H 0.153 0.847
38 H 0.169 0.831
39 H 0.088 0.912
40 H 0.143 0.857
41 H 0.156 0.844
42 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 8.979 -16.642 -1.969 19.012
hybrid contribution 0.513 1.095 0.407 1.276
sum 9.492 -15.547 -1.563 18.282
Atomic orbital electron populations
1.70056 1.07534 1.27949 1.51614 1.25828 0.95736 1.02896 0.94772
0.85530 0.78350 0.78411 0.78891 1.20415 1.20536 1.18456 1.21601
0.92926 0.91877 1.50198 0.93313 1.18514 0.87956 0.83960 0.94682
1.47714 1.44890 1.33604 1.05403 1.20950 0.82246 0.84174 0.82492
1.90607 1.58750 1.62299 1.31994 1.21482 0.97777 0.94140 0.98425
0.88089 1.21788 0.97392 0.96140 0.99756 1.21525 0.97405 1.00389
0.96496 1.21491 1.00812 0.97386 0.95084 1.21761 0.97760 0.98548
0.98576 1.21050 0.95569 0.91108 0.91369 0.91751 1.58455 1.36482
1.37232 1.06444 1.21915 0.98701 1.02226 0.80929 1.23322 1.04508
0.96157 0.98748 1.23437 0.97611 0.97681 1.02971 0.92615 0.99533
0.96434 0.89352 0.87799 0.89668 0.96152 0.89523 0.92354 0.92206
0.92858 0.84190 0.84713 0.83071 0.91164 0.85721 0.84406 0.91233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16
2 C 0.01 0.36 5.46 84.66 0.46 0.82 16
3 Si 0.96 46.63 29.54 68.60 2.03 48.65 16
4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
5 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16
6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
7 C -0.53 -31.44 9.19 25.60 0.24 -31.20 16
8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16
9 C 0.27 15.16 4.46 85.63 0.38 15.55 16
10 N -0.59 -25.63 2.79 -802.15 -2.24 -27.87 16
11 C 0.51 21.73 5.39 87.66 0.47 22.20 16
12 O -0.56 -29.50 12.46 -3.04 -0.04 -29.54 16
13 C -0.10 -2.74 1.88 -11.54 -0.02 -2.76 16
14 H 0.10 2.50 7.57 -2.38 -0.02 2.48 16
15 C -0.11 -2.43 5.08 30.59 0.16 -2.27 16
16 C -0.12 -2.99 5.70 30.59 0.17 -2.82 16
17 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16
18 C -0.13 -3.79 5.20 30.58 0.16 -3.63 16
19 C 0.12 3.19 2.84 44.90 0.13 3.32 16
20 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16
21 N -0.85 -25.21 8.04 -168.76 -1.36 -26.57 16
22 C 0.07 2.13 4.33 44.99 0.19 2.33 16
23 C -0.19 -6.13 9.72 30.59 0.30 -5.83 16
24 C -0.18 -4.89 9.30 30.59 0.28 -4.61 16
25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16
26 H -0.01 -0.88 7.42 -2.38 -0.02 -0.90 16
27 H 0.02 1.02 6.33 -2.39 -0.02 1.00 16
28 H 0.09 1.83 4.41 -2.39 -0.01 1.82 16
29 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16
30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
31 H 0.02 0.68 7.22 -2.39 -0.02 0.66 16
32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16
33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16
34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.05 2.18 5.51 -2.39 -0.01 2.17 16
36 H 0.34 8.60 9.04 -89.69 -0.81 7.79 16
37 H 0.34 8.91 8.99 -89.70 -0.81 8.11 16
38 H 0.15 3.66 6.17 -2.38 -0.01 3.65 16
39 H 0.07 2.98 6.29 -2.39 -0.02 2.97 16
40 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16
41 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16
42 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16
Total: -1.00 -78.04 320.23 1.19 -76.84
By element:
Atomic # 1 Polarization: 28.37 SS G_CDS: -0.59 Total: 27.79 kcal
Atomic # 6 Polarization: -14.38 SS G_CDS: 3.10 Total: -11.28 kcal
Atomic # 7 Polarization: -109.15 SS G_CDS: -3.31 Total: -112.46 kcal
Atomic # 8 Polarization: -29.50 SS G_CDS: -0.04 Total: -29.54 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal
Total: -78.04 1.19 -76.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085369722.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal
(2) G-P(sol) polarization free energy of solvation -78.037 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds