Wall clock time and date at job start Mon Mar 30 2020 04:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47165 * 299.99284 * 3 2 1 6 6 H 1.48498 * 109.47398 * 59.99725 * 3 2 1 7 7 C 1.37876 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00034 * 90.00190 * 10 9 7 12 12 O 1.21274 * 120.00115 * 4.79579 * 11 10 9 13 13 C 1.50695 * 119.99888 * 184.52440 * 11 10 9 14 14 H 1.09005 * 109.47301 * 333.37277 * 13 11 10 15 15 C 1.52998 * 109.47506 * 93.37334 * 13 11 10 16 16 C 1.52997 * 109.47199 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47177 * 299.99829 * 16 15 13 18 18 C 1.52998 * 109.46916 * 59.99998 * 17 16 15 19 19 C 1.52997 * 109.47199 * 299.99989 * 18 17 16 20 20 H 1.08997 * 109.47555 * 300.00351 * 19 18 17 21 21 N 1.46903 * 109.46927 * 179.97438 * 19 18 17 22 22 C 1.46498 * 119.99947 * 270.00072 * 10 9 7 23 23 C 1.53001 * 117.50012 * 9.27680 * 22 10 9 24 24 C 1.53001 * 117.49819 * 300.61413 * 22 10 9 25 25 H 0.97001 * 120.00101 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46924 * 59.99890 * 9 7 2 27 27 H 1.09002 * 109.47165 * 300.00374 * 9 7 2 28 28 H 1.09001 * 109.46760 * 300.00012 * 15 13 11 29 29 H 1.08997 * 109.47154 * 59.99602 * 15 13 11 30 30 H 1.08997 * 109.47555 * 59.99649 * 16 15 13 31 31 H 1.09002 * 109.47357 * 180.02562 * 16 15 13 32 32 H 1.08994 * 109.47473 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.46936 * 300.00526 * 17 16 15 34 34 H 1.08997 * 109.47154 * 60.00585 * 18 17 16 35 35 H 1.09001 * 109.46760 * 180.02562 * 18 17 16 36 36 H 1.00897 * 111.00022 * 60.00896 * 21 19 18 37 37 H 1.00907 * 110.99954 * 183.95594 * 21 19 18 38 38 H 1.09000 * 115.55406 * 154.94318 * 22 10 9 39 39 H 1.09005 * 117.50008 * 359.97438 * 23 22 10 40 40 H 1.08995 * 117.50431 * 145.02022 * 23 22 10 41 41 H 1.09006 * 117.49819 * 214.97627 * 24 22 10 42 42 H 1.08993 * 117.50046 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.6400 -4.1244 1.1695 12 8 2.1805 -3.7225 2.2175 13 6 3.6953 -5.2002 1.1728 14 1 3.6486 -5.7578 0.2374 15 6 5.0770 -4.5590 1.3160 16 6 6.1483 -5.6512 1.3187 17 6 5.9037 -6.6027 2.4917 18 6 4.5220 -7.2439 2.3485 19 6 3.4506 -6.1516 2.3458 20 1 3.4975 -5.5944 3.2814 21 7 2.1240 -6.7673 2.2078 22 6 2.6800 -4.1699 -1.2663 23 6 2.3231 -3.4152 -2.5485 24 6 1.6336 -4.7429 -2.2243 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 5.2514 -3.8815 0.4801 29 1 5.1237 -4.0014 2.2513 30 1 6.1015 -6.2085 0.3831 31 1 7.1327 -5.1944 1.4211 32 1 6.6672 -7.3806 2.4939 33 1 5.9505 -6.0454 3.4273 34 1 4.4752 -7.8011 1.4130 35 1 4.3475 -7.9214 3.1844 36 1 1.9382 -7.4007 2.9709 37 1 1.4042 -6.0636 2.1386 38 1 3.6507 -4.6643 -1.2271 39 1 1.7330 -2.5041 -2.4485 40 1 3.0586 -3.4133 -3.3528 41 1 1.9160 -5.6140 -2.8156 42 1 0.5904 -4.7056 -1.9108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085369724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:49 Heat of formation + Delta-G solvation = -49.629734 kcal Electronic energy + Delta-G solvation = -21562.564270 eV Core-core repulsion = 18541.427146 eV Total energy + Delta-G solvation = -3021.137124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44671 -39.11360 -38.03140 -35.25896 -34.46308 -33.78073 -32.18194 -29.64499 -28.79781 -25.52861 -24.15238 -23.22842 -23.05698 -22.55510 -20.83742 -19.58673 -18.61195 -18.37545 -17.22808 -16.64880 -16.51090 -16.05539 -15.94836 -15.38317 -15.23397 -15.10336 -14.76897 -14.31542 -13.95456 -13.53939 -13.39316 -13.33211 -12.89935 -12.79408 -12.68539 -12.45953 -12.26037 -12.21598 -12.17055 -12.10333 -11.69126 -11.48332 -11.45480 -11.30751 -11.11789 -10.67230 -10.36740 -9.68942 -9.25072 -8.23935 -6.38752 1.33295 1.35425 1.47275 1.73378 2.22331 2.39632 3.04790 3.08619 3.42277 3.51567 3.71835 3.92276 4.03767 4.08233 4.18234 4.21353 4.26796 4.35840 4.47379 4.50097 4.54957 4.85222 4.85793 4.90070 4.93843 5.01642 5.08761 5.14429 5.21873 5.24861 5.26119 5.28925 5.33965 5.40402 5.53209 5.55663 5.82031 6.03868 6.09529 6.48302 6.68002 6.79134 7.25894 7.44996 8.82851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.006030 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.505826 B = 4642.412199 C = 4933.218885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.262 3.738 10 N -0.574 5.574 11 C 0.509 3.491 12 O -0.601 6.601 13 C -0.088 4.088 14 H 0.113 0.887 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.101 4.101 19 C 0.107 3.893 20 H 0.016 0.984 21 N -0.844 5.844 22 C 0.057 3.943 23 C -0.181 4.181 24 C -0.178 4.178 25 H 0.266 0.734 26 H 0.023 0.977 27 H -0.007 1.007 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.348 0.652 37 H 0.331 0.669 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.405 -15.438 -2.035 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.141 3.859 10 N -0.302 5.302 11 C 0.299 3.701 12 O -0.483 6.483 13 C -0.110 4.110 14 H 0.131 0.869 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.138 4.138 19 C -0.005 4.005 20 H 0.034 0.966 21 N -0.373 5.373 22 C -0.047 4.047 23 C -0.219 4.219 24 C -0.217 4.217 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.011 0.989 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.282 -15.413 -2.180 19.829 hybrid contribution -0.817 2.068 1.211 2.532 sum 11.465 -13.346 -0.969 17.621 Atomic orbital electron populations 1.70065 1.07560 1.28017 1.51250 1.25835 0.95752 1.02948 0.94552 0.85397 0.78841 0.78805 0.77973 1.19067 1.19334 1.20854 1.21628 0.93034 0.91646 1.50756 0.93063 1.18686 0.88089 0.83783 0.95357 1.47720 1.43977 1.33081 1.05412 1.21283 0.83090 0.83085 0.82634 1.90607 1.60497 1.64245 1.32955 1.21422 0.93433 0.93898 1.02204 0.86898 1.21476 0.92484 0.98892 1.01749 1.21523 0.97392 0.95692 0.99914 1.21569 0.96663 0.99163 0.98227 1.21517 0.92793 0.96120 1.03420 1.21180 0.90558 0.94200 0.94540 0.96565 1.58902 1.03426 1.23285 1.51721 1.21980 0.99111 1.02848 0.80746 1.23323 1.04318 0.96024 0.98202 1.23418 0.97481 0.97986 1.02772 0.92462 0.95881 0.98938 0.91623 0.93693 0.89824 0.90216 0.89067 0.92898 0.90099 0.90879 0.83867 0.85752 0.83041 0.90752 0.85391 0.84621 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 7 C -0.53 -31.13 9.16 25.60 0.23 -30.89 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.26 14.54 4.49 85.63 0.38 14.93 16 10 N -0.57 -25.39 2.80 -802.17 -2.24 -27.63 16 11 C 0.51 22.04 5.74 87.66 0.50 22.54 16 12 O -0.60 -31.90 15.26 -3.01 -0.05 -31.95 16 13 C -0.09 -2.69 1.56 -11.54 -0.02 -2.71 16 14 H 0.11 3.00 6.16 -2.38 -0.01 2.99 16 15 C -0.11 -2.91 5.19 30.59 0.16 -2.75 16 16 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 17 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16 18 C -0.10 -1.94 5.50 30.59 0.17 -1.77 16 19 C 0.11 3.01 2.43 44.92 0.11 3.12 16 20 H 0.02 0.55 7.85 -2.39 -0.02 0.53 16 21 N -0.84 -23.83 9.23 -168.67 -1.56 -25.39 16 22 C 0.06 1.89 5.76 44.99 0.26 2.15 16 23 C -0.18 -5.86 9.73 30.62 0.30 -5.57 16 24 C -0.18 -5.15 10.11 30.62 0.31 -4.84 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.02 1.31 6.32 -2.39 -0.02 1.30 16 27 H -0.01 -0.48 7.36 -2.39 -0.02 -0.50 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.35 8.11 9.04 -89.70 -0.81 7.30 16 37 H 0.33 11.52 7.48 -89.69 -0.67 10.85 16 38 H 0.15 3.90 6.45 -2.39 -0.02 3.88 16 39 H 0.07 3.11 6.29 -2.38 -0.01 3.09 16 40 H 0.13 3.17 8.14 -2.39 -0.02 3.16 16 41 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 42 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -73.50 330.98 1.23 -72.27 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.46 Total: 30.29 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 3.23 Total: -8.42 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.51 Total: -109.79 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.50 1.23 -72.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.640 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds