Wall clock time and date at job start Mon Mar 30 2020 04:40:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 119.99842 * 2 1
4 4 H 1.48505 * 109.47113 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47165 * 299.99284 * 3 2 1
6 6 H 1.48498 * 109.47398 * 59.99725 * 3 2 1
7 7 C 1.37876 * 119.99906 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99994 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00176 * 0.02562 * 7 2 1
10 10 N 1.46499 * 109.47169 * 180.02562 * 9 7 2
11 11 C 1.34779 * 120.00034 * 90.00190 * 10 9 7
12 12 O 1.21274 * 120.00115 * 4.79579 * 11 10 9
13 13 C 1.50695 * 119.99888 * 184.52440 * 11 10 9
14 14 H 1.09005 * 109.47301 * 333.37277 * 13 11 10
15 15 C 1.52998 * 109.47506 * 93.37334 * 13 11 10
16 16 C 1.52997 * 109.47199 * 180.02562 * 15 13 11
17 17 C 1.53004 * 109.47177 * 299.99829 * 16 15 13
18 18 C 1.52998 * 109.46916 * 59.99998 * 17 16 15
19 19 C 1.52997 * 109.47199 * 299.99989 * 18 17 16
20 20 H 1.08997 * 109.47555 * 300.00351 * 19 18 17
21 21 N 1.46903 * 109.46927 * 179.97438 * 19 18 17
22 22 C 1.46498 * 119.99947 * 270.00072 * 10 9 7
23 23 C 1.53001 * 117.50012 * 9.27680 * 22 10 9
24 24 C 1.53001 * 117.49819 * 300.61413 * 22 10 9
25 25 H 0.97001 * 120.00101 * 0.02562 * 1 2 3
26 26 H 1.08995 * 109.46924 * 59.99890 * 9 7 2
27 27 H 1.09002 * 109.47165 * 300.00374 * 9 7 2
28 28 H 1.09001 * 109.46760 * 300.00012 * 15 13 11
29 29 H 1.08997 * 109.47154 * 59.99602 * 15 13 11
30 30 H 1.08997 * 109.47555 * 59.99649 * 16 15 13
31 31 H 1.09002 * 109.47357 * 180.02562 * 16 15 13
32 32 H 1.08994 * 109.47473 * 180.02562 * 17 16 15
33 33 H 1.09005 * 109.46936 * 300.00526 * 17 16 15
34 34 H 1.08997 * 109.47154 * 60.00585 * 18 17 16
35 35 H 1.09001 * 109.46760 * 180.02562 * 18 17 16
36 36 H 1.00897 * 111.00022 * 60.00896 * 21 19 18
37 37 H 1.00907 * 110.99954 * 183.95594 * 21 19 18
38 38 H 1.09000 * 115.55406 * 154.94318 * 22 10 9
39 39 H 1.09005 * 117.50008 * 359.97438 * 23 22 10
40 40 H 1.08995 * 117.50431 * 145.02022 * 23 22 10
41 41 H 1.09006 * 117.49819 * 214.97627 * 24 22 10
42 42 H 1.08993 * 117.50046 * 359.97438 * 24 22 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2511 -2.4991 0.0005
10 7 2.2031 -3.6126 0.0018
11 6 2.6400 -4.1244 1.1695
12 8 2.1805 -3.7225 2.2175
13 6 3.6953 -5.2002 1.1728
14 1 3.6486 -5.7578 0.2374
15 6 5.0770 -4.5590 1.3160
16 6 6.1483 -5.6512 1.3187
17 6 5.9037 -6.6027 2.4917
18 6 4.5220 -7.2439 2.3485
19 6 3.4506 -6.1516 2.3458
20 1 3.4975 -5.5944 3.2814
21 7 2.1240 -6.7673 2.2078
22 6 2.6800 -4.1699 -1.2663
23 6 2.3231 -3.4152 -2.5485
24 6 1.6336 -4.7429 -2.2243
25 1 -0.4850 0.8400 -0.0004
26 1 0.6248 -2.5570 -0.8896
27 1 0.6240 -2.5567 0.8903
28 1 5.2514 -3.8815 0.4801
29 1 5.1237 -4.0014 2.2513
30 1 6.1015 -6.2085 0.3831
31 1 7.1327 -5.1944 1.4211
32 1 6.6672 -7.3806 2.4939
33 1 5.9505 -6.0454 3.4273
34 1 4.4752 -7.8011 1.4130
35 1 4.3475 -7.9214 3.1844
36 1 1.9382 -7.4007 2.9709
37 1 1.4042 -6.0636 2.1386
38 1 3.6507 -4.6643 -1.2271
39 1 1.7330 -2.5041 -2.4485
40 1 3.0586 -3.4133 -3.3528
41 1 1.9160 -5.6140 -2.8156
42 1 0.5904 -4.7056 -1.9108
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085369724.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:49
Heat of formation + Delta-G solvation = -49.629734 kcal
Electronic energy + Delta-G solvation = -21562.564270 eV
Core-core repulsion = 18541.427146 eV
Total energy + Delta-G solvation = -3021.137124 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.44671 -39.11360 -38.03140 -35.25896 -34.46308 -33.78073 -32.18194 -29.64499
-28.79781 -25.52861 -24.15238 -23.22842 -23.05698 -22.55510 -20.83742 -19.58673
-18.61195 -18.37545 -17.22808 -16.64880 -16.51090 -16.05539 -15.94836 -15.38317
-15.23397 -15.10336 -14.76897 -14.31542 -13.95456 -13.53939 -13.39316 -13.33211
-12.89935 -12.79408 -12.68539 -12.45953 -12.26037 -12.21598 -12.17055 -12.10333
-11.69126 -11.48332 -11.45480 -11.30751 -11.11789 -10.67230 -10.36740 -9.68942
-9.25072 -8.23935 -6.38752 1.33295 1.35425 1.47275 1.73378 2.22331
2.39632 3.04790 3.08619 3.42277 3.51567 3.71835 3.92276 4.03767
4.08233 4.18234 4.21353 4.26796 4.35840 4.47379 4.50097 4.54957
4.85222 4.85793 4.90070 4.93843 5.01642 5.08761 5.14429 5.21873
5.24861 5.26119 5.28925 5.33965 5.40402 5.53209 5.55663 5.82031
6.03868 6.09529 6.48302 6.68002 6.79134 7.25894 7.44996 8.82851
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.020697 B = 0.006030 C = 0.005674
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.505826 B = 4642.412199 C = 4933.218885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.008 3.992
3 Si 0.965 3.035
4 H -0.266 1.266
5 H -0.268 1.268
6 H -0.283 1.283
7 C -0.532 4.532
8 H 0.051 0.949
9 C 0.262 3.738
10 N -0.574 5.574
11 C 0.509 3.491
12 O -0.601 6.601
13 C -0.088 4.088
14 H 0.113 0.887
15 C -0.107 4.107
16 C -0.108 4.108
17 C -0.118 4.118
18 C -0.101 4.101
19 C 0.107 3.893
20 H 0.016 0.984
21 N -0.844 5.844
22 C 0.057 3.943
23 C -0.181 4.181
24 C -0.178 4.178
25 H 0.266 0.734
26 H 0.023 0.977
27 H -0.007 1.007
28 H 0.065 0.935
29 H 0.044 0.956
30 H 0.083 0.917
31 H 0.079 0.921
32 H 0.091 0.909
33 H 0.052 0.948
34 H 0.080 0.920
35 H 0.073 0.927
36 H 0.348 0.652
37 H 0.331 0.669
38 H 0.152 0.848
39 H 0.074 0.926
40 H 0.128 0.872
41 H 0.136 0.864
42 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.405 -15.438 -2.035 19.909
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.191 4.191
3 Si 0.790 3.210
4 H -0.191 1.191
5 H -0.193 1.193
6 H -0.209 1.209
7 C -0.571 4.571
8 H 0.069 0.931
9 C 0.141 3.859
10 N -0.302 5.302
11 C 0.299 3.701
12 O -0.483 6.483
13 C -0.110 4.110
14 H 0.131 0.869
15 C -0.146 4.146
16 C -0.145 4.145
17 C -0.156 4.156
18 C -0.138 4.138
19 C -0.005 4.005
20 H 0.034 0.966
21 N -0.373 5.373
22 C -0.047 4.047
23 C -0.219 4.219
24 C -0.217 4.217
25 H 0.075 0.925
26 H 0.041 0.959
27 H 0.011 0.989
28 H 0.084 0.916
29 H 0.063 0.937
30 H 0.102 0.898
31 H 0.098 0.902
32 H 0.109 0.891
33 H 0.071 0.929
34 H 0.099 0.901
35 H 0.091 0.909
36 H 0.161 0.839
37 H 0.142 0.858
38 H 0.170 0.830
39 H 0.092 0.908
40 H 0.146 0.854
41 H 0.154 0.846
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 12.282 -15.413 -2.180 19.829
hybrid contribution -0.817 2.068 1.211 2.532
sum 11.465 -13.346 -0.969 17.621
Atomic orbital electron populations
1.70065 1.07560 1.28017 1.51250 1.25835 0.95752 1.02948 0.94552
0.85397 0.78841 0.78805 0.77973 1.19067 1.19334 1.20854 1.21628
0.93034 0.91646 1.50756 0.93063 1.18686 0.88089 0.83783 0.95357
1.47720 1.43977 1.33081 1.05412 1.21283 0.83090 0.83085 0.82634
1.90607 1.60497 1.64245 1.32955 1.21422 0.93433 0.93898 1.02204
0.86898 1.21476 0.92484 0.98892 1.01749 1.21523 0.97392 0.95692
0.99914 1.21569 0.96663 0.99163 0.98227 1.21517 0.92793 0.96120
1.03420 1.21180 0.90558 0.94200 0.94540 0.96565 1.58902 1.03426
1.23285 1.51721 1.21980 0.99111 1.02848 0.80746 1.23323 1.04318
0.96024 0.98202 1.23418 0.97481 0.97986 1.02772 0.92462 0.95881
0.98938 0.91623 0.93693 0.89824 0.90216 0.89067 0.92898 0.90099
0.90879 0.83867 0.85752 0.83041 0.90752 0.85391 0.84621 0.91084
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16
2 C 0.01 0.46 5.46 84.65 0.46 0.92 16
3 Si 0.97 45.57 29.54 68.60 2.03 47.60 16
4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
6 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16
7 C -0.53 -31.13 9.16 25.60 0.23 -30.89 16
8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16
9 C 0.26 14.54 4.49 85.63 0.38 14.93 16
10 N -0.57 -25.39 2.80 -802.17 -2.24 -27.63 16
11 C 0.51 22.04 5.74 87.66 0.50 22.54 16
12 O -0.60 -31.90 15.26 -3.01 -0.05 -31.95 16
13 C -0.09 -2.69 1.56 -11.54 -0.02 -2.71 16
14 H 0.11 3.00 6.16 -2.38 -0.01 2.99 16
15 C -0.11 -2.91 5.19 30.59 0.16 -2.75 16
16 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16
17 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16
18 C -0.10 -1.94 5.50 30.59 0.17 -1.77 16
19 C 0.11 3.01 2.43 44.92 0.11 3.12 16
20 H 0.02 0.55 7.85 -2.39 -0.02 0.53 16
21 N -0.84 -23.83 9.23 -168.67 -1.56 -25.39 16
22 C 0.06 1.89 5.76 44.99 0.26 2.15 16
23 C -0.18 -5.86 9.73 30.62 0.30 -5.57 16
24 C -0.18 -5.15 10.11 30.62 0.31 -4.84 16
25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
26 H 0.02 1.31 6.32 -2.39 -0.02 1.30 16
27 H -0.01 -0.48 7.36 -2.39 -0.02 -0.50 16
28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16
34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.35 8.11 9.04 -89.70 -0.81 7.30 16
37 H 0.33 11.52 7.48 -89.69 -0.67 10.85 16
38 H 0.15 3.90 6.45 -2.39 -0.02 3.88 16
39 H 0.07 3.11 6.29 -2.38 -0.01 3.09 16
40 H 0.13 3.17 8.14 -2.39 -0.02 3.16 16
41 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16
42 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16
Total: -1.00 -73.50 330.98 1.23 -72.27
By element:
Atomic # 1 Polarization: 30.76 SS G_CDS: -0.46 Total: 30.29 kcal
Atomic # 6 Polarization: -11.65 SS G_CDS: 3.23 Total: -8.42 kcal
Atomic # 7 Polarization: -106.28 SS G_CDS: -3.51 Total: -109.79 kcal
Atomic # 8 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -73.50 1.23 -72.27 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085369724.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.640 kcal
(2) G-P(sol) polarization free energy of solvation -73.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds