Wall clock time and date at job start Mon Mar 30 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47589 * 179.97438 * 14 12 11 16 16 C 1.53136 * 109.42995 * 295.26591 * 15 14 12 17 17 C 1.53708 * 108.88991 * 185.90128 * 16 15 14 18 18 H 1.09001 * 112.61769 * 188.03774 * 17 16 15 19 19 C 1.54609 * 107.80963 * 312.37580 * 17 16 15 20 20 C 1.55894 * 104.99349 * 88.54211 * 19 17 16 21 21 C 1.54611 * 104.07543 * 0.02562 * 20 19 17 22 22 H 1.08999 * 112.21928 * 147.26940 * 21 20 19 23 23 C 1.53131 * 109.43132 * 174.99934 * 15 14 12 24 24 N 1.48713 * 104.78540 * 25.22031 * 21 20 19 25 25 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 31 31 H 1.09004 * 109.46818 * 300.00196 * 14 12 11 32 32 H 1.09004 * 109.46923 * 59.99646 * 14 12 11 33 33 H 1.09010 * 109.42023 * 55.10694 * 15 14 12 34 34 H 1.08999 * 109.56466 * 305.72624 * 16 15 14 35 35 H 1.09004 * 109.56917 * 66.08438 * 16 15 14 36 36 H 1.09000 * 110.36316 * 207.38989 * 19 17 16 37 37 H 1.08996 * 110.37069 * 329.60242 * 19 17 16 38 38 H 1.08999 * 110.91418 * 241.34486 * 20 19 17 39 39 H 1.09000 * 110.55188 * 118.52475 * 20 19 17 40 40 H 1.09001 * 109.56799 * 293.91953 * 23 15 14 41 41 H 1.09005 * 109.56548 * 54.27367 * 23 15 14 42 42 H 1.00901 * 110.99955 * 199.03530 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0008 15 6 2.4276 -8.5660 -0.0009 16 6 3.2271 -8.5526 -1.3069 17 6 4.1145 -9.8065 -1.3601 18 1 4.8130 -9.7906 -2.1968 19 6 4.8361 -9.9332 0.0014 20 6 3.8665 -10.7639 0.8959 21 6 2.6585 -11.0515 -0.0252 22 1 2.1971 -12.0155 0.1891 23 6 1.6652 -9.8881 0.1249 24 7 3.2093 -10.9855 -1.4051 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 -0.8905 29 1 2.8721 -3.6042 0.8895 30 1 0.5429 -4.9308 -0.0011 31 1 0.8064 -7.4607 0.8890 32 1 0.8070 -7.4610 -0.8910 33 1 3.1102 -8.4594 0.8423 34 1 2.5417 -8.5541 -2.1545 35 1 3.8529 -7.6608 -1.3428 36 1 5.7834 -10.4588 -0.1189 37 1 5.0025 -8.9475 0.4358 38 1 3.5512 -10.1886 1.7664 39 1 4.3371 -11.6966 1.2067 40 1 1.1856 -9.9413 1.1023 41 1 0.9096 -9.9497 -0.6583 42 1 2.4733 -10.8508 -2.0821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093677667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:14 Heat of formation + Delta-G solvation = -59.679624 kcal Electronic energy + Delta-G solvation = -20405.036813 eV Core-core repulsion = 17383.463893 eV Total energy + Delta-G solvation = -3021.572920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89108 -39.02836 -34.97881 -33.68900 -32.85757 -31.40508 -30.48186 -29.91597 -27.57536 -24.63769 -24.28407 -22.20508 -20.94518 -20.41471 -19.95106 -19.33543 -17.00010 -16.49673 -16.33638 -15.96403 -15.09964 -14.81541 -14.50335 -14.32793 -13.85582 -13.60215 -13.25718 -12.88530 -12.72237 -12.36589 -12.34839 -12.14462 -12.06433 -11.55846 -11.34657 -11.24075 -11.19333 -11.05947 -10.64524 -10.55077 -10.49734 -10.42238 -10.32123 -9.77334 -9.45864 -9.18116 -8.59300 -8.51649 -8.36086 -6.12036 -4.14918 3.00824 3.26402 3.33982 3.38871 3.68085 4.07404 4.38116 4.41210 4.55770 4.69648 4.85930 4.90473 4.98520 5.07683 5.19126 5.25101 5.29898 5.32878 5.42964 5.53900 5.57620 5.71739 5.76034 5.80876 5.89525 5.94299 6.05747 6.10471 6.26131 6.32169 6.33481 6.35219 6.67009 6.71835 6.92651 7.16375 7.49153 7.58721 7.86352 8.01346 8.25425 8.66123 8.91467 9.50177 10.99624 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049189 B = 0.003115 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.098024 B = 8986.559648 C = 9235.776552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.724 5.724 12 C 0.504 3.496 13 O -0.549 6.549 14 C -0.140 4.140 15 C -0.071 4.071 16 C -0.149 4.149 17 C 0.066 3.934 18 H 0.095 0.905 19 C -0.120 4.120 20 C -0.118 4.118 21 C 0.064 3.936 22 H 0.093 0.907 23 C -0.146 4.146 24 N -0.661 5.661 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -21.575 -0.218 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.374 5.374 12 C 0.290 3.710 13 O -0.428 6.428 14 C -0.180 4.180 15 C -0.090 4.090 16 C -0.188 4.188 17 C -0.044 4.044 18 H 0.113 0.887 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.046 4.046 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.289 5.289 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.277 -21.987 -0.180 22.230 hybrid contribution -0.949 1.893 0.021 2.117 sum 2.328 -20.094 -0.158 20.229 Atomic orbital electron populations 1.69965 1.06096 1.26787 1.50477 1.25005 0.94903 0.99452 0.94978 0.86457 0.80175 0.83305 0.77639 1.19565 1.20908 1.20913 1.21095 0.93279 0.90404 1.51217 0.92214 1.19326 0.94210 0.91213 0.97784 1.21698 0.96022 0.81695 1.00657 1.46385 1.10492 1.06711 1.73827 1.20589 0.88351 0.85590 0.76496 1.90624 1.14033 1.87753 1.50344 1.21781 0.99244 0.92984 1.03964 1.20999 0.96224 0.92056 0.99710 1.22556 0.99325 1.00403 0.96497 1.22829 0.94715 0.88642 0.98204 0.88748 1.22654 0.98128 1.00490 0.94533 1.22645 0.95462 0.99942 0.97583 1.22814 0.94508 0.97324 0.89915 0.88859 1.22494 0.98275 0.95408 1.02350 1.63942 1.20086 1.40046 1.04869 0.92887 0.95991 0.95999 0.92683 0.92670 0.76990 0.89226 0.89420 0.89622 0.92628 0.88922 0.91739 0.90490 0.91108 0.91593 0.91385 0.91849 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.34 5.56 -60.29 -0.33 -12.67 16 12 C 0.50 8.07 7.57 -10.99 -0.08 7.98 16 13 O -0.55 -10.56 13.96 5.56 0.08 -10.48 16 14 C -0.14 -1.57 5.17 -27.88 -0.14 -1.72 16 15 C -0.07 -0.77 1.48 -90.48 -0.13 -0.90 16 16 C -0.15 -1.72 4.40 -26.29 -0.12 -1.83 16 17 C 0.07 0.69 4.59 -65.49 -0.30 0.39 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.12 -1.24 6.00 -24.34 -0.15 -1.39 16 20 C -0.12 -1.08 6.08 -24.34 -0.15 -1.23 16 21 C 0.06 0.56 4.55 -65.49 -0.30 0.27 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 23 C -0.15 -1.25 4.73 -26.29 -0.12 -1.37 16 24 N -0.66 -6.35 7.40 -94.68 -0.70 -7.05 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.06 5.35 -51.92 -0.28 0.79 16 34 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.09 1.34 6.08 -51.93 -0.32 1.03 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.90 7.04 -51.93 -0.37 0.53 16 38 H 0.07 0.64 7.07 -51.93 -0.37 0.27 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 42 H 0.33 2.91 8.24 -39.29 -0.32 2.58 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -30.58 324.85 -9.44 -40.02 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.02 Total: 4.66 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.07 Total: -10.34 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.30 Total: -45.07 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.58 -9.44 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093677667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.657 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds