Wall clock time and date at job start Mon Mar 30 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47589 * 179.97438 * 14 12 11 16 16 C 1.53136 * 109.42995 * 295.26591 * 15 14 12 17 17 C 1.53708 * 108.88991 * 185.90128 * 16 15 14 18 18 H 1.09001 * 112.61769 * 188.03774 * 17 16 15 19 19 C 1.54609 * 107.80963 * 312.37580 * 17 16 15 20 20 C 1.55894 * 104.99349 * 88.54211 * 19 17 16 21 21 C 1.54611 * 104.07543 * 0.02562 * 20 19 17 22 22 H 1.08999 * 112.21928 * 147.26940 * 21 20 19 23 23 C 1.53131 * 109.43132 * 174.99934 * 15 14 12 24 24 N 1.48713 * 104.78540 * 25.22031 * 21 20 19 25 25 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 31 31 H 1.09004 * 109.46818 * 300.00196 * 14 12 11 32 32 H 1.09004 * 109.46923 * 59.99646 * 14 12 11 33 33 H 1.09010 * 109.42023 * 55.10694 * 15 14 12 34 34 H 1.08999 * 109.56466 * 305.72624 * 16 15 14 35 35 H 1.09004 * 109.56917 * 66.08438 * 16 15 14 36 36 H 1.09000 * 110.36316 * 207.38989 * 19 17 16 37 37 H 1.08996 * 110.37069 * 329.60242 * 19 17 16 38 38 H 1.08999 * 110.91418 * 241.34486 * 20 19 17 39 39 H 1.09000 * 110.55188 * 118.52475 * 20 19 17 40 40 H 1.09001 * 109.56799 * 293.91953 * 23 15 14 41 41 H 1.09005 * 109.56548 * 54.27367 * 23 15 14 42 42 H 1.00901 * 110.99955 * 199.03530 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0008 15 6 2.4276 -8.5660 -0.0009 16 6 3.2271 -8.5526 -1.3069 17 6 4.1145 -9.8065 -1.3601 18 1 4.8130 -9.7906 -2.1968 19 6 4.8361 -9.9332 0.0014 20 6 3.8665 -10.7639 0.8959 21 6 2.6585 -11.0515 -0.0252 22 1 2.1971 -12.0155 0.1891 23 6 1.6652 -9.8881 0.1249 24 7 3.2093 -10.9855 -1.4051 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 -0.8905 29 1 2.8721 -3.6042 0.8895 30 1 0.5429 -4.9308 -0.0011 31 1 0.8064 -7.4607 0.8890 32 1 0.8070 -7.4610 -0.8910 33 1 3.1102 -8.4594 0.8423 34 1 2.5417 -8.5541 -2.1545 35 1 3.8529 -7.6608 -1.3428 36 1 5.7834 -10.4588 -0.1189 37 1 5.0025 -8.9475 0.4358 38 1 3.5512 -10.1886 1.7664 39 1 4.3371 -11.6966 1.2067 40 1 1.1856 -9.9413 1.1023 41 1 0.9096 -9.9497 -0.6583 42 1 2.4733 -10.8508 -2.0821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093677667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:14 Heat of formation + Delta-G solvation = -80.895844 kcal Electronic energy + Delta-G solvation = -20405.956817 eV Core-core repulsion = 17383.463893 eV Total energy + Delta-G solvation = -3022.492925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76450 -40.30844 -36.64426 -34.81909 -34.65236 -32.17828 -31.70477 -31.24317 -28.75324 -26.47743 -25.07702 -23.40036 -22.59370 -21.30285 -21.12772 -20.13701 -18.60781 -18.00034 -17.30516 -17.11738 -16.49147 -16.48272 -16.10091 -15.26555 -15.10037 -14.61735 -14.53869 -14.33879 -13.78430 -13.54304 -13.30887 -13.25187 -13.05868 -12.96748 -12.89472 -12.54243 -12.39987 -12.24839 -12.14123 -12.01817 -11.66799 -11.48342 -11.36221 -11.28247 -11.21338 -10.65858 -10.62868 -9.98104 -9.31930 -8.26693 -6.37276 1.39108 1.40192 1.53266 1.72168 2.29020 2.46708 3.07975 3.32792 3.60640 3.70394 3.84759 3.99805 4.07700 4.17402 4.21742 4.38377 4.42782 4.46443 4.50153 4.52519 4.66004 4.70691 4.79936 4.83216 4.90569 5.03353 5.06190 5.08498 5.16696 5.25283 5.28494 5.33163 5.37670 5.50399 5.52596 5.55791 5.77163 5.89724 6.14298 6.47768 6.67862 6.76331 7.32345 7.35021 8.85321 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049189 B = 0.003115 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.098024 B = 8986.559648 C = 9235.776552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.722 5.722 12 C 0.500 3.500 13 O -0.584 6.584 14 C -0.129 4.129 15 C -0.069 4.069 16 C -0.145 4.145 17 C 0.067 3.933 18 H 0.091 0.909 19 C -0.122 4.122 20 C -0.118 4.118 21 C 0.065 3.935 22 H 0.111 0.889 23 C -0.138 4.138 24 N -0.663 5.663 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.410 0.590 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -22.797 -0.131 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.373 5.373 12 C 0.289 3.711 13 O -0.465 6.465 14 C -0.169 4.169 15 C -0.088 4.088 16 C -0.184 4.184 17 C -0.043 4.043 18 H 0.109 0.891 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.044 4.044 22 H 0.129 0.871 23 C -0.176 4.176 24 N -0.292 5.292 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.245 0.755 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.455 -23.236 -0.093 23.366 hybrid contribution -0.675 2.245 -0.012 2.345 sum 1.780 -20.991 -0.105 21.066 Atomic orbital electron populations 1.70060 1.07508 1.27979 1.51020 1.25873 0.95816 1.03103 0.94377 0.85397 0.78929 0.78755 0.77974 1.19047 1.20132 1.20130 1.21504 0.93529 0.92052 1.51524 0.92486 1.19129 0.94215 0.91824 0.96284 1.21154 0.94986 0.82705 0.99417 1.46236 1.11062 1.05725 1.74317 1.21492 0.88175 0.86564 0.74903 1.90625 1.15952 1.88294 1.51582 1.21823 0.99125 0.89668 1.06236 1.20971 0.96004 0.93382 0.98409 1.22472 0.99232 0.99302 0.97378 1.22763 0.94812 0.88656 0.98062 0.89065 1.22631 0.98818 0.99689 0.94915 1.22660 0.95484 0.99933 0.97488 1.22902 0.94239 0.98216 0.89079 0.87149 1.22433 0.98083 0.93410 1.03713 1.63939 1.20434 1.39102 1.05681 0.92495 0.97360 0.97344 0.93964 0.93917 0.75464 0.86667 0.87103 0.91527 0.91879 0.92510 0.91544 0.92584 0.91040 0.90847 0.89953 0.90429 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.57 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 6.11 5.61 86.38 0.48 6.60 16 11 N -0.72 -24.41 5.56 -463.05 -2.57 -26.98 16 12 C 0.50 15.78 7.57 87.66 0.66 16.44 16 13 O -0.58 -22.98 13.96 -3.04 -0.04 -23.02 16 14 C -0.13 -2.61 5.17 29.85 0.15 -2.46 16 15 C -0.07 -1.38 1.48 -10.71 -0.02 -1.39 16 16 C -0.14 -3.27 4.40 30.88 0.14 -3.13 16 17 C 0.07 1.36 4.59 45.35 0.21 1.57 16 18 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 19 C -0.12 -2.52 6.00 32.14 0.19 -2.33 16 20 C -0.12 -1.97 6.08 32.14 0.20 -1.78 16 21 C 0.07 0.96 4.55 45.35 0.21 1.17 16 22 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 23 C -0.14 -1.90 4.73 30.88 0.15 -1.76 16 24 N -0.66 -11.34 7.40 -453.45 -3.36 -14.70 16 25 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 11.70 8.47 -92.70 -0.79 10.91 16 31 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 1.62 5.35 -2.38 -0.01 1.61 16 34 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 35 H 0.06 1.71 6.08 -2.38 -0.01 1.69 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.38 7.04 -2.39 -0.02 1.36 16 38 H 0.07 1.19 7.07 -2.39 -0.02 1.17 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.91 8.04 -2.38 -0.02 0.89 16 42 H 0.34 5.06 8.24 -89.69 -0.74 4.33 16 Total: -1.00 -66.39 324.85 -0.95 -67.34 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.51 Total: 21.06 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 3.22 Total: -15.47 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -5.64 Total: -95.64 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.04 Total: -23.02 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.39 -0.95 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093677667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.558 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds