Wall clock time and date at job start Mon Mar 30 2020 05:33:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86800 * 120.00216 * 2 1
4 4 H 1.48499 * 109.47299 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.46838 * 300.00389 * 3 2 1
6 6 H 1.48500 * 109.46823 * 60.00174 * 3 2 1
7 7 C 1.37885 * 120.00035 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99684 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99752 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46850 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.47060 * 179.97438 * 10 9 7
12 12 N 1.46505 * 109.47474 * 179.97438 * 11 10 9
13 13 C 1.33475 * 118.04781 * 95.68436 * 12 11 10
14 14 O 1.21283 * 118.28041 * 357.67264 * 13 12 11
15 15 C 1.50162 * 123.43229 * 177.69643 * 13 12 11
16 16 C 1.53056 * 110.03038 * 17.54321 * 15 13 12
17 17 C 1.53516 * 108.35630 * 311.09590 * 16 15 13
18 18 H 1.08995 * 109.74096 * 188.31802 * 17 16 15
19 19 C 1.53085 * 108.72162 * 308.35470 * 17 16 15
20 20 N 1.46767 * 109.80611 * 176.16499 * 19 17 16
21 21 C 1.46919 * 110.98336 * 297.81379 * 20 19 17
22 22 C 1.53025 * 109.22872 * 62.59000 * 21 20 19
23 23 C 1.45491 * 118.07354 * 275.63922 * 12 11 10
24 24 H 1.09005 * 107.76312 * 80.70258 * 23 12 11
25 25 H 0.97003 * 120.00143 * 359.97438 * 1 2 3
26 26 H 1.08997 * 109.47407 * 59.99591 * 9 7 2
27 27 H 1.08998 * 109.46929 * 299.99774 * 9 7 2
28 28 H 1.09003 * 109.46951 * 59.99972 * 10 9 7
29 29 H 1.08998 * 109.47320 * 299.99718 * 10 9 7
30 30 H 1.09003 * 109.46794 * 60.00449 * 11 10 9
31 31 H 1.08998 * 109.47292 * 300.00309 * 11 10 9
32 32 H 1.09005 * 109.37744 * 257.37176 * 15 13 12
33 33 H 1.09006 * 109.28514 * 137.65829 * 15 13 12
34 34 H 1.09001 * 109.68801 * 191.37676 * 16 15 13
35 35 H 1.09004 * 109.68428 * 70.80789 * 16 15 13
36 36 H 1.08997 * 109.41477 * 56.05850 * 19 17 16
37 37 H 1.09000 * 109.40984 * 296.26738 * 19 17 16
38 38 H 1.00895 * 110.99870 * 173.86651 * 20 19 17
39 39 H 1.08998 * 109.50498 * 302.66549 * 21 20 19
40 40 H 1.08998 * 109.51009 * 182.51301 * 21 20 19
41 41 H 1.08997 * 109.44313 * 61.12812 * 22 21 20
42 42 H 1.09004 * 109.43527 * 181.05470 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8905 2.3963 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2453 -3.6621 -0.0018
11 6 1.4803 -4.9871 -0.0012
12 7 2.4322 -6.1007 -0.0030
13 6 2.7531 -6.6540 1.1685
14 8 2.2750 -6.1808 2.1776
15 6 3.6754 -7.8314 1.3023
16 6 4.4966 -8.0023 0.0221
17 6 3.5391 -7.9523 -1.1768
18 1 4.0755 -8.2178 -2.0877
19 6 2.4007 -8.9477 -0.9383
20 7 1.4218 -8.8539 -2.0277
21 6 0.8134 -7.5174 -2.0748
22 6 1.8991 -6.4795 -2.3676
23 6 2.9711 -6.5387 -1.2815
24 1 3.7790 -5.8588 -1.5524
25 1 -0.4850 0.8401 0.0004
26 1 0.6239 -2.5567 -0.8902
27 1 0.6248 -2.5571 0.8897
28 1 2.8726 -3.6047 0.8877
29 1 2.8712 -3.6040 -0.8923
30 1 0.8527 -5.0447 -0.8906
31 1 0.8546 -5.0450 0.8894
32 1 3.0881 -8.7327 1.4783
33 1 4.3480 -7.6680 2.1444
34 1 5.0111 -8.9631 0.0414
35 1 5.2260 -7.1961 -0.0566
36 1 1.9120 -8.7190 0.0087
37 1 2.8057 -9.9590 -0.9010
38 1 0.7159 -9.5698 -1.9421
39 1 0.3472 -7.2958 -1.1148
40 1 0.0599 -7.4880 -2.8619
41 1 2.3518 -6.6913 -3.3362
42 1 1.4544 -5.4844 -2.3847
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000159936220.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:10
Heat of formation + Delta-G solvation = -47.019798 kcal
Electronic energy + Delta-G solvation = -21445.884539 eV
Core-core repulsion = 18424.860590 eV
Total energy + Delta-G solvation = -3021.023949 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.16061 -38.07667 -35.56504 -34.81443 -33.39129 -31.46031 -30.49115 -29.40886
-26.85642 -24.91099 -24.13873 -23.35933 -21.38842 -20.86666 -20.10941 -17.57362
-16.90475 -16.51612 -16.26461 -16.10781 -15.61111 -14.91072 -14.44029 -14.07611
-13.92553 -13.88192 -13.50386 -13.32609 -13.02967 -12.61471 -12.28186 -12.21953
-11.88339 -11.54851 -11.36198 -11.13072 -11.00687 -10.87160 -10.77050 -10.62677
-10.51619 -10.41496 -9.63934 -9.61955 -9.23609 -9.11392 -8.67685 -8.32047
-8.25213 -5.96943 -3.98799 2.86869 3.22309 3.33084 3.40374 3.45007
3.98835 4.38516 4.44157 4.49073 4.56902 4.64186 4.97432 5.02197
5.10864 5.14028 5.27258 5.36589 5.39028 5.42408 5.60753 5.62090
5.68719 5.71290 5.77498 5.85967 5.90116 5.98746 6.01694 6.10633
6.29937 6.51899 6.70218 6.77632 7.01548 7.13068 7.15139 7.70088
7.73533 7.86968 8.02975 8.42007 8.47890 9.07966 9.64939 11.14501
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.027673 B = 0.004644 C = 0.004364
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.575337 B = 6027.563112 C = 6414.990652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.056 3.944
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.517 4.517
8 H 0.054 0.946
9 C 0.024 3.976
10 C -0.117 4.117
11 C 0.098 3.902
12 N -0.592 5.592
13 C 0.509 3.491
14 O -0.552 6.552
15 C -0.136 4.136
16 C -0.119 4.119
17 C -0.093 4.093
18 H 0.098 0.902
19 C 0.058 3.942
20 N -0.688 5.688
21 C 0.056 3.944
22 C -0.131 4.131
23 C 0.147 3.853
24 H 0.071 0.929
25 H 0.259 0.741
26 H 0.015 0.985
27 H 0.017 0.983
28 H 0.050 0.950
29 H 0.046 0.954
30 H 0.074 0.926
31 H 0.083 0.917
32 H 0.095 0.905
33 H 0.097 0.903
34 H 0.076 0.924
35 H 0.075 0.925
36 H 0.035 0.965
37 H 0.075 0.925
38 H 0.342 0.658
39 H 0.036 0.964
40 H 0.076 0.924
41 H 0.084 0.916
42 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.031 -20.696 -4.922 22.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.145 4.145
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.555 4.555
8 H 0.072 0.928
9 C -0.013 4.013
10 C -0.156 4.156
11 C -0.023 4.023
12 N -0.324 5.324
13 C 0.297 3.703
14 O -0.431 6.431
15 C -0.176 4.176
16 C -0.157 4.157
17 C -0.112 4.112
18 H 0.116 0.884
19 C -0.071 4.071
20 N -0.319 5.319
21 C -0.073 4.073
22 C -0.169 4.169
23 C 0.042 3.958
24 H 0.089 0.911
25 H 0.069 0.931
26 H 0.034 0.966
27 H 0.036 0.964
28 H 0.069 0.931
29 H 0.065 0.935
30 H 0.093 0.907
31 H 0.101 0.899
32 H 0.113 0.887
33 H 0.115 0.885
34 H 0.095 0.905
35 H 0.093 0.907
36 H 0.053 0.947
37 H 0.093 0.907
38 H 0.159 0.841
39 H 0.054 0.946
40 H 0.095 0.905
41 H 0.102 0.898
42 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 6.115 -20.205 -4.875 21.666
hybrid contribution -0.130 0.957 0.719 1.204
sum 5.984 -19.248 -4.156 20.581
Atomic orbital electron populations
1.69975 1.06031 1.26424 1.51102 1.25019 0.94840 0.99214 0.95387
0.86549 0.80123 0.83860 0.77555 1.19786 1.21026 1.21004 1.21264
0.93009 0.91024 1.50234 0.92762 1.19033 0.93926 0.91186 0.97203
1.21894 0.99570 0.93694 1.00433 1.21920 0.91794 0.85696 1.02884
1.47433 1.45328 1.34007 1.05599 1.20068 0.82367 0.84723 0.83144
1.90739 1.54289 1.62826 1.35248 1.21697 0.98608 0.97357 0.99950
1.21737 0.97715 1.03125 0.93161 1.21473 0.96081 0.93940 0.99701
0.88388 1.22042 0.93483 0.99155 0.92465 1.60356 1.19361 1.05104
1.47042 1.21938 0.96221 0.88620 1.00562 1.21898 0.96539 0.99962
0.98506 1.20702 0.96250 0.95041 0.83756 0.91090 0.93097 0.96647
0.96447 0.93136 0.93535 0.90739 0.89909 0.88689 0.88503 0.90500
0.90674 0.94720 0.90653 0.84079 0.94615 0.90529 0.89759 0.89553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16
4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16
9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16
10 C -0.12 -2.54 5.45 -26.73 -0.15 -2.69 16
11 C 0.10 1.79 4.58 -4.04 -0.02 1.77 16
12 N -0.59 -8.94 2.27 -167.79 -0.38 -9.32 16
13 C 0.51 8.14 6.64 -11.82 -0.08 8.06 16
14 O -0.55 -11.49 16.15 5.55 0.09 -11.40 16
15 C -0.14 -1.49 5.37 -28.11 -0.15 -1.64 16
16 C -0.12 -1.02 5.66 -26.43 -0.15 -1.17 16
17 C -0.09 -0.85 2.83 -90.46 -0.26 -1.11 16
18 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16
19 C 0.06 0.52 5.22 -3.85 -0.02 0.50 16
20 N -0.69 -6.31 6.85 -113.80 -0.78 -7.09 16
21 C 0.06 0.59 6.30 -3.80 -0.02 0.56 16
22 C -0.13 -1.46 5.06 -26.86 -0.14 -1.60 16
23 C 0.15 1.74 2.66 -68.77 -0.18 1.56 16
24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.07 1.23 5.26 -51.93 -0.27 0.96 16
31 H 0.08 1.70 7.04 -51.93 -0.37 1.33 16
32 H 0.09 0.91 6.81 -51.93 -0.35 0.55 16
33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
35 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16
36 H 0.03 0.37 5.49 -51.93 -0.29 0.08 16
37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.34 2.62 8.90 -39.29 -0.35 2.27 16
39 H 0.04 0.44 7.37 -51.93 -0.38 0.06 16
40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
42 H 0.09 1.09 6.09 -51.93 -0.32 0.77 16
LS Contribution 319.42 15.07 4.81 4.81
Total: -1.00 -33.54 319.42 -9.19 -42.74
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: -6.94 Total: -1.09 kcal
Atomic # 6 Polarization: -7.37 SS G_CDS: -1.71 Total: -9.08 kcal
Atomic # 7 Polarization: -42.67 SS G_CDS: -0.42 Total: -43.09 kcal
Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -33.54 -9.19 -42.74 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000159936220.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal
(2) G-P(sol) polarization free energy of solvation -33.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds