Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48499 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46838 * 300.00389 * 3 2 1 6 6 H 1.48500 * 109.46823 * 60.00174 * 3 2 1 7 7 C 1.37885 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.33475 * 118.04781 * 95.68436 * 12 11 10 14 14 O 1.21283 * 118.28041 * 357.67264 * 13 12 11 15 15 C 1.50162 * 123.43229 * 177.69643 * 13 12 11 16 16 C 1.53056 * 110.03038 * 17.54321 * 15 13 12 17 17 C 1.53516 * 108.35630 * 311.09590 * 16 15 13 18 18 H 1.08995 * 109.74096 * 188.31802 * 17 16 15 19 19 C 1.53085 * 108.72162 * 308.35470 * 17 16 15 20 20 N 1.46767 * 109.80611 * 176.16499 * 19 17 16 21 21 C 1.46919 * 110.98336 * 297.81379 * 20 19 17 22 22 C 1.53025 * 109.22872 * 62.59000 * 21 20 19 23 23 C 1.45491 * 118.07354 * 275.63922 * 12 11 10 24 24 H 1.09005 * 107.76312 * 80.70258 * 23 12 11 25 25 H 0.97003 * 120.00143 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47407 * 59.99591 * 9 7 2 27 27 H 1.08998 * 109.46929 * 299.99774 * 9 7 2 28 28 H 1.09003 * 109.46951 * 59.99972 * 10 9 7 29 29 H 1.08998 * 109.47320 * 299.99718 * 10 9 7 30 30 H 1.09003 * 109.46794 * 60.00449 * 11 10 9 31 31 H 1.08998 * 109.47292 * 300.00309 * 11 10 9 32 32 H 1.09005 * 109.37744 * 257.37176 * 15 13 12 33 33 H 1.09006 * 109.28514 * 137.65829 * 15 13 12 34 34 H 1.09001 * 109.68801 * 191.37676 * 16 15 13 35 35 H 1.09004 * 109.68428 * 70.80789 * 16 15 13 36 36 H 1.08997 * 109.41477 * 56.05850 * 19 17 16 37 37 H 1.09000 * 109.40984 * 296.26738 * 19 17 16 38 38 H 1.00895 * 110.99870 * 173.86651 * 20 19 17 39 39 H 1.08998 * 109.50498 * 302.66549 * 21 20 19 40 40 H 1.08998 * 109.51009 * 182.51301 * 21 20 19 41 41 H 1.08997 * 109.44313 * 61.12812 * 22 21 20 42 42 H 1.09004 * 109.43527 * 181.05470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0030 13 6 2.7531 -6.6540 1.1685 14 8 2.2750 -6.1808 2.1776 15 6 3.6754 -7.8314 1.3023 16 6 4.4966 -8.0023 0.0221 17 6 3.5391 -7.9523 -1.1768 18 1 4.0755 -8.2178 -2.0877 19 6 2.4007 -8.9477 -0.9383 20 7 1.4218 -8.8539 -2.0277 21 6 0.8134 -7.5174 -2.0748 22 6 1.8991 -6.4795 -2.3676 23 6 2.9711 -6.5387 -1.2815 24 1 3.7790 -5.8588 -1.5524 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8712 -3.6040 -0.8923 30 1 0.8527 -5.0447 -0.8906 31 1 0.8546 -5.0450 0.8894 32 1 3.0881 -8.7327 1.4783 33 1 4.3480 -7.6680 2.1444 34 1 5.0111 -8.9631 0.0414 35 1 5.2260 -7.1961 -0.0566 36 1 1.9120 -8.7190 0.0087 37 1 2.8057 -9.9590 -0.9010 38 1 0.7159 -9.5698 -1.9421 39 1 0.3472 -7.2958 -1.1148 40 1 0.0599 -7.4880 -2.8619 41 1 2.3518 -6.6913 -3.3362 42 1 1.4544 -5.4844 -2.3847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159936220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = -47.019798 kcal Electronic energy + Delta-G solvation = -21445.884539 eV Core-core repulsion = 18424.860590 eV Total energy + Delta-G solvation = -3021.023949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16061 -38.07667 -35.56504 -34.81443 -33.39129 -31.46031 -30.49115 -29.40886 -26.85642 -24.91099 -24.13873 -23.35933 -21.38842 -20.86666 -20.10941 -17.57362 -16.90475 -16.51612 -16.26461 -16.10781 -15.61111 -14.91072 -14.44029 -14.07611 -13.92553 -13.88192 -13.50386 -13.32609 -13.02967 -12.61471 -12.28186 -12.21953 -11.88339 -11.54851 -11.36198 -11.13072 -11.00687 -10.87160 -10.77050 -10.62677 -10.51619 -10.41496 -9.63934 -9.61955 -9.23609 -9.11392 -8.67685 -8.32047 -8.25213 -5.96943 -3.98799 2.86869 3.22309 3.33084 3.40374 3.45007 3.98835 4.38516 4.44157 4.49073 4.56902 4.64186 4.97432 5.02197 5.10864 5.14028 5.27258 5.36589 5.39028 5.42408 5.60753 5.62090 5.68719 5.71290 5.77498 5.85967 5.90116 5.98746 6.01694 6.10633 6.29937 6.51899 6.70218 6.77632 7.01548 7.13068 7.15139 7.70088 7.73533 7.86968 8.02975 8.42007 8.47890 9.07966 9.64939 11.14501 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004644 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.575337 B = 6027.563112 C = 6414.990652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.117 4.117 11 C 0.098 3.902 12 N -0.592 5.592 13 C 0.509 3.491 14 O -0.552 6.552 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.093 4.093 18 H 0.098 0.902 19 C 0.058 3.942 20 N -0.688 5.688 21 C 0.056 3.944 22 C -0.131 4.131 23 C 0.147 3.853 24 H 0.071 0.929 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.017 0.983 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.342 0.658 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -20.696 -4.922 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.023 4.023 12 N -0.324 5.324 13 C 0.297 3.703 14 O -0.431 6.431 15 C -0.176 4.176 16 C -0.157 4.157 17 C -0.112 4.112 18 H 0.116 0.884 19 C -0.071 4.071 20 N -0.319 5.319 21 C -0.073 4.073 22 C -0.169 4.169 23 C 0.042 3.958 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.115 -20.205 -4.875 21.666 hybrid contribution -0.130 0.957 0.719 1.204 sum 5.984 -19.248 -4.156 20.581 Atomic orbital electron populations 1.69975 1.06031 1.26424 1.51102 1.25019 0.94840 0.99214 0.95387 0.86549 0.80123 0.83860 0.77555 1.19786 1.21026 1.21004 1.21264 0.93009 0.91024 1.50234 0.92762 1.19033 0.93926 0.91186 0.97203 1.21894 0.99570 0.93694 1.00433 1.21920 0.91794 0.85696 1.02884 1.47433 1.45328 1.34007 1.05599 1.20068 0.82367 0.84723 0.83144 1.90739 1.54289 1.62826 1.35248 1.21697 0.98608 0.97357 0.99950 1.21737 0.97715 1.03125 0.93161 1.21473 0.96081 0.93940 0.99701 0.88388 1.22042 0.93483 0.99155 0.92465 1.60356 1.19361 1.05104 1.47042 1.21938 0.96221 0.88620 1.00562 1.21898 0.96539 0.99962 0.98506 1.20702 0.96250 0.95041 0.83756 0.91090 0.93097 0.96647 0.96447 0.93136 0.93535 0.90739 0.89909 0.88689 0.88503 0.90500 0.90674 0.94720 0.90653 0.84079 0.94615 0.90529 0.89759 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.54 5.45 -26.73 -0.15 -2.69 16 11 C 0.10 1.79 4.58 -4.04 -0.02 1.77 16 12 N -0.59 -8.94 2.27 -167.79 -0.38 -9.32 16 13 C 0.51 8.14 6.64 -11.82 -0.08 8.06 16 14 O -0.55 -11.49 16.15 5.55 0.09 -11.40 16 15 C -0.14 -1.49 5.37 -28.11 -0.15 -1.64 16 16 C -0.12 -1.02 5.66 -26.43 -0.15 -1.17 16 17 C -0.09 -0.85 2.83 -90.46 -0.26 -1.11 16 18 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 19 C 0.06 0.52 5.22 -3.85 -0.02 0.50 16 20 N -0.69 -6.31 6.85 -113.80 -0.78 -7.09 16 21 C 0.06 0.59 6.30 -3.80 -0.02 0.56 16 22 C -0.13 -1.46 5.06 -26.86 -0.14 -1.60 16 23 C 0.15 1.74 2.66 -68.77 -0.18 1.56 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.23 5.26 -51.93 -0.27 0.96 16 31 H 0.08 1.70 7.04 -51.93 -0.37 1.33 16 32 H 0.09 0.91 6.81 -51.93 -0.35 0.55 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.03 0.37 5.49 -51.93 -0.29 0.08 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.34 2.62 8.90 -39.29 -0.35 2.27 16 39 H 0.04 0.44 7.37 -51.93 -0.38 0.06 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.09 6.09 -51.93 -0.32 0.77 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.54 319.42 -9.19 -42.74 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.94 Total: -1.09 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.71 Total: -9.08 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.42 Total: -43.09 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.54 -9.19 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159936220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds