Wall clock time and date at job start Mon Mar 30 2020 05:33:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86800 * 120.00216 * 2 1
4 4 H 1.48499 * 109.47299 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.46838 * 300.00389 * 3 2 1
6 6 H 1.48500 * 109.46823 * 60.00174 * 3 2 1
7 7 C 1.37885 * 120.00035 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99684 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99752 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46850 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.47060 * 179.97438 * 10 9 7
12 12 N 1.46505 * 109.47474 * 179.97438 * 11 10 9
13 13 C 1.33475 * 118.04781 * 95.68436 * 12 11 10
14 14 O 1.21283 * 118.28041 * 357.67264 * 13 12 11
15 15 C 1.50162 * 123.43229 * 177.69643 * 13 12 11
16 16 C 1.53056 * 110.03038 * 17.54321 * 15 13 12
17 17 C 1.53516 * 108.35630 * 311.09590 * 16 15 13
18 18 H 1.08995 * 109.74096 * 188.31802 * 17 16 15
19 19 C 1.53085 * 108.72162 * 308.35470 * 17 16 15
20 20 N 1.46767 * 109.80611 * 176.16499 * 19 17 16
21 21 C 1.46919 * 110.98336 * 297.81379 * 20 19 17
22 22 C 1.53025 * 109.22872 * 62.59000 * 21 20 19
23 23 C 1.45491 * 118.07354 * 275.63922 * 12 11 10
24 24 H 1.09005 * 107.76312 * 80.70258 * 23 12 11
25 25 H 0.97003 * 120.00143 * 359.97438 * 1 2 3
26 26 H 1.08997 * 109.47407 * 59.99591 * 9 7 2
27 27 H 1.08998 * 109.46929 * 299.99774 * 9 7 2
28 28 H 1.09003 * 109.46951 * 59.99972 * 10 9 7
29 29 H 1.08998 * 109.47320 * 299.99718 * 10 9 7
30 30 H 1.09003 * 109.46794 * 60.00449 * 11 10 9
31 31 H 1.08998 * 109.47292 * 300.00309 * 11 10 9
32 32 H 1.09005 * 109.37744 * 257.37176 * 15 13 12
33 33 H 1.09006 * 109.28514 * 137.65829 * 15 13 12
34 34 H 1.09001 * 109.68801 * 191.37676 * 16 15 13
35 35 H 1.09004 * 109.68428 * 70.80789 * 16 15 13
36 36 H 1.08997 * 109.41477 * 56.05850 * 19 17 16
37 37 H 1.09000 * 109.40984 * 296.26738 * 19 17 16
38 38 H 1.00895 * 110.99870 * 173.86651 * 20 19 17
39 39 H 1.08998 * 109.50498 * 302.66549 * 21 20 19
40 40 H 1.08998 * 109.51009 * 182.51301 * 21 20 19
41 41 H 1.08997 * 109.44313 * 61.12812 * 22 21 20
42 42 H 1.09004 * 109.43527 * 181.05470 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8905 2.3963 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2453 -3.6621 -0.0018
11 6 1.4803 -4.9871 -0.0012
12 7 2.4322 -6.1007 -0.0030
13 6 2.7531 -6.6540 1.1685
14 8 2.2750 -6.1808 2.1776
15 6 3.6754 -7.8314 1.3023
16 6 4.4966 -8.0023 0.0221
17 6 3.5391 -7.9523 -1.1768
18 1 4.0755 -8.2178 -2.0877
19 6 2.4007 -8.9477 -0.9383
20 7 1.4218 -8.8539 -2.0277
21 6 0.8134 -7.5174 -2.0748
22 6 1.8991 -6.4795 -2.3676
23 6 2.9711 -6.5387 -1.2815
24 1 3.7790 -5.8588 -1.5524
25 1 -0.4850 0.8401 0.0004
26 1 0.6239 -2.5567 -0.8902
27 1 0.6248 -2.5571 0.8897
28 1 2.8726 -3.6047 0.8877
29 1 2.8712 -3.6040 -0.8923
30 1 0.8527 -5.0447 -0.8906
31 1 0.8546 -5.0450 0.8894
32 1 3.0881 -8.7327 1.4783
33 1 4.3480 -7.6680 2.1444
34 1 5.0111 -8.9631 0.0414
35 1 5.2260 -7.1961 -0.0566
36 1 1.9120 -8.7190 0.0087
37 1 2.8057 -9.9590 -0.9010
38 1 0.7159 -9.5698 -1.9421
39 1 0.3472 -7.2958 -1.1148
40 1 0.0599 -7.4880 -2.8619
41 1 2.3518 -6.6913 -3.3362
42 1 1.4544 -5.4844 -2.3847
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000159936220.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:10
Heat of formation + Delta-G solvation = -70.378824 kcal
Electronic energy + Delta-G solvation = -21446.897462 eV
Core-core repulsion = 18424.860590 eV
Total energy + Delta-G solvation = -3022.036872 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.23893 -39.20263 -37.02913 -35.74053 -35.26859 -33.18118 -31.68944 -30.26878
-28.71239 -25.90162 -25.38080 -24.70599 -22.72984 -21.93454 -21.70344 -18.78826
-18.33337 -17.83845 -17.48067 -17.25755 -16.79667 -16.51289 -15.79444 -15.54544
-15.08343 -14.99756 -14.57454 -14.39317 -14.27911 -13.94267 -13.80777 -13.49970
-13.10310 -12.97491 -12.75715 -12.66309 -12.50008 -12.36053 -12.08183 -11.78946
-11.66452 -11.62734 -11.46311 -11.32289 -11.23972 -10.59850 -10.57127 -9.71784
-9.35978 -8.23375 -6.35193 1.36925 1.38169 1.51388 1.61647 2.01468
2.38773 3.09357 3.26301 3.53448 3.58738 3.66721 3.84387 4.08098
4.12027 4.16907 4.27974 4.34351 4.39495 4.45011 4.54434 4.60381
4.68213 4.72171 4.80632 4.89102 4.90025 4.91519 5.00212 5.10564
5.15472 5.19872 5.21091 5.25284 5.43848 5.53923 5.65518 5.78847
6.00358 6.20063 6.47414 6.53868 6.80124 7.18060 7.34009 8.88728
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.027673 B = 0.004644 C = 0.004364
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.575337 B = 6027.563112 C = 6414.990652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.001 3.999
3 Si 0.967 3.033
4 H -0.264 1.264
5 H -0.272 1.272
6 H -0.279 1.279
7 C -0.544 4.544
8 H 0.056 0.944
9 C 0.030 3.970
10 C -0.097 4.097
11 C 0.111 3.889
12 N -0.586 5.586
13 C 0.498 3.502
14 O -0.612 6.612
15 C -0.128 4.128
16 C -0.111 4.111
17 C -0.086 4.086
18 H 0.121 0.879
19 C 0.057 3.943
20 N -0.682 5.682
21 C 0.059 3.941
22 C -0.129 4.129
23 C 0.137 3.863
24 H 0.070 0.930
25 H 0.265 0.735
26 H 0.003 0.997
27 H -0.018 1.018
28 H 0.028 0.972
29 H 0.060 0.940
30 H 0.091 0.909
31 H 0.052 0.948
32 H 0.114 0.886
33 H 0.101 0.899
34 H 0.114 0.886
35 H 0.072 0.928
36 H 0.015 0.985
37 H 0.103 0.897
38 H 0.352 0.648
39 H 0.010 0.990
40 H 0.086 0.914
41 H 0.103 0.897
42 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.157 -22.237 -6.442 24.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.197 4.197
3 Si 0.791 3.209
4 H -0.188 1.188
5 H -0.197 1.197
6 H -0.204 1.204
7 C -0.582 4.582
8 H 0.074 0.926
9 C -0.008 4.008
10 C -0.136 4.136
11 C -0.012 4.012
12 N -0.316 5.316
13 C 0.289 3.711
14 O -0.495 6.495
15 C -0.167 4.167
16 C -0.149 4.149
17 C -0.105 4.105
18 H 0.139 0.861
19 C -0.072 4.072
20 N -0.313 5.313
21 C -0.071 4.071
22 C -0.167 4.167
23 C 0.034 3.966
24 H 0.088 0.912
25 H 0.074 0.926
26 H 0.021 0.979
27 H 0.001 0.999
28 H 0.047 0.953
29 H 0.078 0.922
30 H 0.109 0.891
31 H 0.070 0.930
32 H 0.132 0.868
33 H 0.120 0.880
34 H 0.132 0.868
35 H 0.091 0.909
36 H 0.033 0.967
37 H 0.121 0.879
38 H 0.170 0.830
39 H 0.028 0.972
40 H 0.104 0.896
41 H 0.122 0.878
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.261 -21.784 -6.433 24.170
hybrid contribution -0.846 1.422 1.180 2.033
sum 7.414 -20.362 -5.253 22.297
Atomic orbital electron populations
1.70101 1.07795 1.27821 1.51497 1.25993 0.95813 1.03393 0.94521
0.85369 0.78946 0.78566 0.77985 1.18757 1.19737 1.20441 1.21653
0.93345 0.92366 1.50853 0.92586 1.18904 0.94223 0.92833 0.94833
1.21607 0.98339 0.93845 0.99805 1.21501 0.91969 0.85521 1.02182
1.47461 1.44346 1.32662 1.07139 1.21151 0.82203 0.85534 0.82221
1.90710 1.56663 1.64915 1.37245 1.21732 0.97993 0.95216 1.01803
1.21757 0.97044 1.05073 0.91012 1.21512 0.96296 0.91587 1.01095
0.86087 1.22111 0.93188 1.00525 0.91361 1.60374 1.19603 1.04388
1.46979 1.21861 0.96190 0.89466 0.99540 1.21879 0.96564 0.99104
0.99177 1.21050 0.96300 0.97235 0.82005 0.91241 0.92644 0.97887
0.99915 0.95333 0.92181 0.89139 0.92956 0.86785 0.88024 0.86775
0.90933 0.96699 0.87858 0.82971 0.97199 0.89555 0.87820 0.91630
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16
2 C 0.00 0.04 5.46 84.66 0.46 0.50 16
3 Si 0.97 45.62 29.54 68.60 2.03 47.64 16
4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16
5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
7 C -0.54 -32.55 9.11 25.60 0.23 -32.32 16
8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
9 C 0.03 1.66 4.97 29.85 0.15 1.81 16
10 C -0.10 -4.41 5.45 30.59 0.17 -4.25 16
11 C 0.11 4.27 4.58 86.38 0.40 4.67 16
12 N -0.59 -17.94 2.27 -803.88 -1.82 -19.76 16
13 C 0.50 16.17 6.64 87.69 0.58 16.75 16
14 O -0.61 -26.84 16.15 -3.04 -0.05 -26.89 16
15 C -0.13 -2.56 5.37 29.70 0.16 -2.40 16
16 C -0.11 -1.48 5.66 30.79 0.17 -1.31 16
17 C -0.09 -1.28 2.83 -10.69 -0.03 -1.31 16
18 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16
19 C 0.06 0.85 5.22 86.36 0.45 1.30 16
20 N -0.68 -10.69 6.85 -513.97 -3.52 -14.21 16
21 C 0.06 1.18 6.30 86.31 0.54 1.72 16
22 C -0.13 -2.73 5.06 30.51 0.15 -2.57 16
23 C 0.14 3.05 2.66 44.99 0.12 3.17 16
24 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16
25 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16
26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16
27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16
28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16
30 H 0.09 3.16 5.26 -2.39 -0.01 3.15 16
31 H 0.05 2.33 7.04 -2.39 -0.02 2.31 16
32 H 0.11 1.89 6.81 -2.38 -0.02 1.87 16
33 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16
34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
35 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16
36 H 0.01 0.29 5.49 -2.39 -0.01 0.27 16
37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.35 4.49 8.90 -89.70 -0.80 3.69 16
39 H 0.01 0.24 7.37 -2.39 -0.02 0.23 16
40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
42 H 0.07 1.65 6.09 -2.38 -0.01 1.64 16
Total: -1.00 -76.11 319.42 0.69 -75.42
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: 0.21 Total: 10.06 kcal
Atomic # 6 Polarization: -17.80 SS G_CDS: 3.56 Total: -14.24 kcal
Atomic # 7 Polarization: -86.94 SS G_CDS: -5.06 Total: -91.99 kcal
Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal
Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal
Total: -76.11 0.69 -75.42 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000159936220.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.044 kcal
(2) G-P(sol) polarization free energy of solvation -76.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds