Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48499 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46838 * 300.00389 * 3 2 1 6 6 H 1.48500 * 109.46823 * 60.00174 * 3 2 1 7 7 C 1.37885 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.33475 * 118.04781 * 95.68436 * 12 11 10 14 14 O 1.21283 * 118.28041 * 357.67264 * 13 12 11 15 15 C 1.50162 * 123.43229 * 177.69643 * 13 12 11 16 16 C 1.53056 * 110.03038 * 17.54321 * 15 13 12 17 17 C 1.53516 * 108.35630 * 311.09590 * 16 15 13 18 18 H 1.08995 * 109.74096 * 188.31802 * 17 16 15 19 19 C 1.53085 * 108.72162 * 308.35470 * 17 16 15 20 20 N 1.46767 * 109.80611 * 176.16499 * 19 17 16 21 21 C 1.46919 * 110.98336 * 297.81379 * 20 19 17 22 22 C 1.53025 * 109.22872 * 62.59000 * 21 20 19 23 23 C 1.45491 * 118.07354 * 275.63922 * 12 11 10 24 24 H 1.09005 * 107.76312 * 80.70258 * 23 12 11 25 25 H 0.97003 * 120.00143 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47407 * 59.99591 * 9 7 2 27 27 H 1.08998 * 109.46929 * 299.99774 * 9 7 2 28 28 H 1.09003 * 109.46951 * 59.99972 * 10 9 7 29 29 H 1.08998 * 109.47320 * 299.99718 * 10 9 7 30 30 H 1.09003 * 109.46794 * 60.00449 * 11 10 9 31 31 H 1.08998 * 109.47292 * 300.00309 * 11 10 9 32 32 H 1.09005 * 109.37744 * 257.37176 * 15 13 12 33 33 H 1.09006 * 109.28514 * 137.65829 * 15 13 12 34 34 H 1.09001 * 109.68801 * 191.37676 * 16 15 13 35 35 H 1.09004 * 109.68428 * 70.80789 * 16 15 13 36 36 H 1.08997 * 109.41477 * 56.05850 * 19 17 16 37 37 H 1.09000 * 109.40984 * 296.26738 * 19 17 16 38 38 H 1.00895 * 110.99870 * 173.86651 * 20 19 17 39 39 H 1.08998 * 109.50498 * 302.66549 * 21 20 19 40 40 H 1.08998 * 109.51009 * 182.51301 * 21 20 19 41 41 H 1.08997 * 109.44313 * 61.12812 * 22 21 20 42 42 H 1.09004 * 109.43527 * 181.05470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0030 13 6 2.7531 -6.6540 1.1685 14 8 2.2750 -6.1808 2.1776 15 6 3.6754 -7.8314 1.3023 16 6 4.4966 -8.0023 0.0221 17 6 3.5391 -7.9523 -1.1768 18 1 4.0755 -8.2178 -2.0877 19 6 2.4007 -8.9477 -0.9383 20 7 1.4218 -8.8539 -2.0277 21 6 0.8134 -7.5174 -2.0748 22 6 1.8991 -6.4795 -2.3676 23 6 2.9711 -6.5387 -1.2815 24 1 3.7790 -5.8588 -1.5524 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8712 -3.6040 -0.8923 30 1 0.8527 -5.0447 -0.8906 31 1 0.8546 -5.0450 0.8894 32 1 3.0881 -8.7327 1.4783 33 1 4.3480 -7.6680 2.1444 34 1 5.0111 -8.9631 0.0414 35 1 5.2260 -7.1961 -0.0566 36 1 1.9120 -8.7190 0.0087 37 1 2.8057 -9.9590 -0.9010 38 1 0.7159 -9.5698 -1.9421 39 1 0.3472 -7.2958 -1.1148 40 1 0.0599 -7.4880 -2.8619 41 1 2.3518 -6.6913 -3.3362 42 1 1.4544 -5.4844 -2.3847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159936220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = -70.378824 kcal Electronic energy + Delta-G solvation = -21446.897462 eV Core-core repulsion = 18424.860590 eV Total energy + Delta-G solvation = -3022.036872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.23893 -39.20263 -37.02913 -35.74053 -35.26859 -33.18118 -31.68944 -30.26878 -28.71239 -25.90162 -25.38080 -24.70599 -22.72984 -21.93454 -21.70344 -18.78826 -18.33337 -17.83845 -17.48067 -17.25755 -16.79667 -16.51289 -15.79444 -15.54544 -15.08343 -14.99756 -14.57454 -14.39317 -14.27911 -13.94267 -13.80777 -13.49970 -13.10310 -12.97491 -12.75715 -12.66309 -12.50008 -12.36053 -12.08183 -11.78946 -11.66452 -11.62734 -11.46311 -11.32289 -11.23972 -10.59850 -10.57127 -9.71784 -9.35978 -8.23375 -6.35193 1.36925 1.38169 1.51388 1.61647 2.01468 2.38773 3.09357 3.26301 3.53448 3.58738 3.66721 3.84387 4.08098 4.12027 4.16907 4.27974 4.34351 4.39495 4.45011 4.54434 4.60381 4.68213 4.72171 4.80632 4.89102 4.90025 4.91519 5.00212 5.10564 5.15472 5.19872 5.21091 5.25284 5.43848 5.53923 5.65518 5.78847 6.00358 6.20063 6.47414 6.53868 6.80124 7.18060 7.34009 8.88728 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004644 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.575337 B = 6027.563112 C = 6414.990652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.097 4.097 11 C 0.111 3.889 12 N -0.586 5.586 13 C 0.498 3.502 14 O -0.612 6.612 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.086 4.086 18 H 0.121 0.879 19 C 0.057 3.943 20 N -0.682 5.682 21 C 0.059 3.941 22 C -0.129 4.129 23 C 0.137 3.863 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.003 0.997 27 H -0.018 1.018 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.015 0.985 37 H 0.103 0.897 38 H 0.352 0.648 39 H 0.010 0.990 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -22.237 -6.442 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.136 4.136 11 C -0.012 4.012 12 N -0.316 5.316 13 C 0.289 3.711 14 O -0.495 6.495 15 C -0.167 4.167 16 C -0.149 4.149 17 C -0.105 4.105 18 H 0.139 0.861 19 C -0.072 4.072 20 N -0.313 5.313 21 C -0.071 4.071 22 C -0.167 4.167 23 C 0.034 3.966 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.001 0.999 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.121 0.879 38 H 0.170 0.830 39 H 0.028 0.972 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.261 -21.784 -6.433 24.170 hybrid contribution -0.846 1.422 1.180 2.033 sum 7.414 -20.362 -5.253 22.297 Atomic orbital electron populations 1.70101 1.07795 1.27821 1.51497 1.25993 0.95813 1.03393 0.94521 0.85369 0.78946 0.78566 0.77985 1.18757 1.19737 1.20441 1.21653 0.93345 0.92366 1.50853 0.92586 1.18904 0.94223 0.92833 0.94833 1.21607 0.98339 0.93845 0.99805 1.21501 0.91969 0.85521 1.02182 1.47461 1.44346 1.32662 1.07139 1.21151 0.82203 0.85534 0.82221 1.90710 1.56663 1.64915 1.37245 1.21732 0.97993 0.95216 1.01803 1.21757 0.97044 1.05073 0.91012 1.21512 0.96296 0.91587 1.01095 0.86087 1.22111 0.93188 1.00525 0.91361 1.60374 1.19603 1.04388 1.46979 1.21861 0.96190 0.89466 0.99540 1.21879 0.96564 0.99104 0.99177 1.21050 0.96300 0.97235 0.82005 0.91241 0.92644 0.97887 0.99915 0.95333 0.92181 0.89139 0.92956 0.86785 0.88024 0.86775 0.90933 0.96699 0.87858 0.82971 0.97199 0.89555 0.87820 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.54 -32.55 9.11 25.60 0.23 -32.32 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.10 -4.41 5.45 30.59 0.17 -4.25 16 11 C 0.11 4.27 4.58 86.38 0.40 4.67 16 12 N -0.59 -17.94 2.27 -803.88 -1.82 -19.76 16 13 C 0.50 16.17 6.64 87.69 0.58 16.75 16 14 O -0.61 -26.84 16.15 -3.04 -0.05 -26.89 16 15 C -0.13 -2.56 5.37 29.70 0.16 -2.40 16 16 C -0.11 -1.48 5.66 30.79 0.17 -1.31 16 17 C -0.09 -1.28 2.83 -10.69 -0.03 -1.31 16 18 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 19 C 0.06 0.85 5.22 86.36 0.45 1.30 16 20 N -0.68 -10.69 6.85 -513.97 -3.52 -14.21 16 21 C 0.06 1.18 6.30 86.31 0.54 1.72 16 22 C -0.13 -2.73 5.06 30.51 0.15 -2.57 16 23 C 0.14 3.05 2.66 44.99 0.12 3.17 16 24 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.09 3.16 5.26 -2.39 -0.01 3.15 16 31 H 0.05 2.33 7.04 -2.39 -0.02 2.31 16 32 H 0.11 1.89 6.81 -2.38 -0.02 1.87 16 33 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 36 H 0.01 0.29 5.49 -2.39 -0.01 0.27 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.35 4.49 8.90 -89.70 -0.80 3.69 16 39 H 0.01 0.24 7.37 -2.39 -0.02 0.23 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 1.65 6.09 -2.38 -0.01 1.64 16 Total: -1.00 -76.11 319.42 0.69 -75.42 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.21 Total: 10.06 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.56 Total: -14.24 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -5.06 Total: -91.99 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.11 0.69 -75.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159936220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.044 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds