Wall clock time and date at job start Mon Mar 30 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47224 * 2 1 4 4 C 1.50696 * 110.36919 * 294.37539 * 3 2 1 5 5 O 1.21279 * 120.00025 * 123.69654 * 4 3 2 6 6 N 1.34774 * 120.00022 * 303.69676 * 4 3 2 7 7 C 1.46500 * 120.00254 * 175.04383 * 6 4 3 8 8 C 1.50697 * 109.47551 * 89.99416 * 7 6 4 9 9 H 1.08002 * 119.99950 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00178 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99769 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 119.99968 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47593 * 89.99604 * 12 10 8 14 14 H 1.48508 * 109.47163 * 209.99855 * 12 10 8 15 15 H 1.48510 * 109.47257 * 329.99660 * 12 10 8 16 16 C 1.46501 * 120.00205 * 355.03683 * 6 4 3 17 17 C 1.53001 * 117.50599 * 194.20606 * 16 6 4 18 18 C 1.52997 * 117.49934 * 125.58186 * 16 6 4 19 19 C 1.54384 * 110.41219 * 171.89906 * 3 2 1 20 20 C 1.54259 * 105.06321 * 217.37028 * 19 3 2 21 21 C 1.54384 * 105.05701 * 359.97438 * 20 19 3 22 22 N 1.48555 * 104.59862 * 23.85350 * 21 20 19 23 23 H 1.08997 * 109.46910 * 64.89531 * 1 2 3 24 24 H 1.08998 * 109.47385 * 184.90545 * 1 2 3 25 25 H 1.09006 * 109.46528 * 304.90508 * 1 2 3 26 26 H 1.08997 * 109.46444 * 239.99789 * 2 1 3 27 27 H 1.08998 * 109.46942 * 120.00238 * 2 1 3 28 28 H 1.09004 * 109.47172 * 209.99929 * 7 6 4 29 29 H 1.09003 * 109.47024 * 329.99741 * 7 6 4 30 30 H 0.97006 * 119.99748 * 180.02562 * 11 10 8 31 31 H 1.09007 * 115.54696 * 339.91519 * 16 6 4 32 32 H 1.08998 * 117.49306 * 0.02562 * 17 16 6 33 33 H 1.08993 * 117.49796 * 145.01681 * 17 16 6 34 34 H 1.09000 * 117.50112 * 214.98664 * 18 16 6 35 35 H 1.09005 * 117.49950 * 0.02562 * 18 16 6 36 36 H 1.09004 * 110.31959 * 336.26475 * 19 3 2 37 37 H 1.08997 * 110.32430 * 98.47251 * 19 3 2 38 38 H 1.08999 * 110.32672 * 118.89619 * 20 19 3 39 39 H 1.08997 * 110.32307 * 241.00235 * 20 19 3 40 40 H 1.09003 * 110.41143 * 265.07061 * 21 20 19 41 41 H 1.08998 * 110.40894 * 142.63686 * 21 20 19 42 42 H 1.00896 * 111.00177 * 200.96048 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6652 2.1313 -1.2868 5 8 1.0249 3.1609 -1.2592 6 7 2.0414 1.6032 -2.4683 7 6 1.5861 2.2115 -3.7208 8 6 2.5767 3.2588 -4.1600 9 1 3.4576 3.4517 -3.5657 10 6 2.3589 3.9700 -5.3209 11 7 3.2238 4.8836 -5.7043 12 14 0.8357 3.6358 -6.3491 13 1 -0.2706 4.5167 -5.8959 14 1 1.1330 3.9100 -7.7781 15 1 0.4335 2.2150 -6.1909 16 6 2.9059 0.4208 -2.5001 17 6 3.5675 0.0649 -3.8330 18 6 2.4174 -0.7902 -3.2974 19 6 3.5701 1.4725 0.2039 20 6 3.8317 2.7051 1.0938 21 6 2.4378 3.3164 1.3521 22 7 1.4924 2.1862 1.1633 23 1 -0.3633 0.4360 -0.9306 24 1 -0.3634 -1.0239 0.0879 25 1 -0.3632 0.5881 0.8429 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5050 1.4430 -4.4896 29 1 0.6117 2.6751 -3.5664 30 1 3.0704 5.3842 -6.5210 31 1 3.4728 0.2283 -1.5892 32 1 3.3599 0.7108 -4.6861 33 1 4.5699 -0.3616 -3.7992 34 1 2.6632 -1.7794 -2.9113 35 1 1.4530 -0.7071 -3.7986 36 1 3.9028 0.5647 0.7072 37 1 4.0776 1.5828 -0.7544 38 1 4.2929 2.4024 2.0338 39 1 4.4691 3.4196 0.5729 40 1 2.2311 4.1091 0.6331 41 1 2.3736 3.6997 2.3705 42 1 0.5606 2.5223 0.9717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215311377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:32 Heat of formation + Delta-G solvation = 2.984113 kcal Electronic energy + Delta-G solvation = -22200.750976 eV Core-core repulsion = 19181.895360 eV Total energy + Delta-G solvation = -3018.855617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55554 -37.65991 -36.56809 -33.27285 -33.24218 -32.03672 -30.20537 -28.67304 -27.39686 -23.43591 -22.83339 -22.61216 -21.96530 -20.70048 -20.18457 -18.46691 -16.97318 -16.81036 -15.91016 -15.48637 -15.23302 -14.60626 -14.26025 -13.89985 -13.68487 -13.38585 -12.94059 -12.81974 -12.50782 -12.41122 -11.95305 -11.88259 -11.70955 -11.29474 -11.26920 -11.09228 -11.06893 -10.89178 -10.66646 -10.54743 -10.51127 -10.34401 -10.11666 -9.97365 -9.52652 -9.30680 -8.62178 -8.29124 -7.61478 -6.11583 -4.09797 3.15448 3.24806 3.30661 3.33072 3.66740 4.28511 4.35755 4.38761 4.67993 4.82807 4.85101 5.17910 5.18833 5.21449 5.23599 5.28225 5.32439 5.46414 5.52200 5.75847 5.84192 5.90099 5.91940 5.99108 6.04021 6.08655 6.12899 6.14415 6.25272 6.27898 6.33589 6.44311 6.61918 6.69582 6.85360 6.88748 7.27602 7.44341 7.56841 8.20028 8.43627 8.85933 8.94096 9.48457 11.01689 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.007490 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.554128 B = 3737.261600 C = 4119.776864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.076 3.924 4 C 0.501 3.499 5 O -0.540 6.540 6 N -0.559 5.559 7 C 0.214 3.786 8 C -0.521 4.521 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.067 3.933 17 C -0.176 4.176 18 C -0.205 4.205 19 C -0.119 4.119 20 C -0.123 4.123 21 C 0.030 3.970 22 N -0.636 5.636 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -12.012 10.773 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.019 4.019 4 C 0.286 3.714 5 O -0.418 6.418 6 N -0.288 5.288 7 C 0.094 3.906 8 C -0.560 4.560 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.192 1.192 16 C -0.039 4.039 17 C -0.214 4.214 18 C -0.243 4.243 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.099 4.099 22 N -0.265 5.265 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.447 -11.735 11.189 16.221 hybrid contribution -0.920 0.642 -1.560 1.922 sum -1.366 -11.093 9.629 14.753 Atomic orbital electron populations 1.21725 0.95614 1.01432 1.02085 1.21733 0.96713 0.93188 1.03072 1.22072 0.95862 0.95462 0.88544 1.21007 0.79994 0.84932 0.85433 1.90658 1.41111 1.23236 1.86762 1.47381 1.47347 1.27000 1.07031 1.19667 0.96401 0.93695 0.80883 1.21250 1.08051 1.18636 1.08036 0.90725 1.24842 0.96180 0.94640 0.97293 1.69893 1.35815 1.23709 1.24001 0.86916 0.84061 0.79269 0.79842 1.19980 1.20981 1.19151 1.21876 0.97733 0.87134 0.97108 1.23404 0.96629 1.02520 0.98838 1.23430 0.99898 0.95367 1.05645 1.22534 0.93038 0.99343 1.00825 1.22272 0.97143 0.97031 0.99614 1.22933 0.91938 0.93768 1.01278 1.63985 1.06118 1.21882 1.34565 0.93090 0.92767 0.92053 0.89942 0.90854 0.95158 0.94885 0.92577 0.85189 0.86401 0.88678 0.88680 0.88842 0.90280 0.90095 0.91215 0.91222 0.92586 0.90447 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.48 37.16 0.35 -1.61 16 2 C -0.11 -1.41 4.84 -26.73 -0.13 -1.54 16 3 C 0.08 1.17 0.41 -131.13 -0.05 1.11 16 4 C 0.50 10.13 5.36 -10.99 -0.06 10.07 16 5 O -0.54 -13.11 14.48 5.56 0.08 -13.03 16 6 N -0.56 -11.38 2.80 -167.47 -0.47 -11.85 16 7 C 0.21 5.18 3.46 -5.19 -0.02 5.17 16 8 C -0.52 -14.74 9.43 -34.44 -0.32 -15.07 16 9 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 10 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 12 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 13 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 16 C 0.07 1.07 3.62 -67.93 -0.25 0.83 16 17 C -0.18 -2.79 9.72 -26.73 -0.26 -3.05 16 18 C -0.20 -2.82 9.29 -26.73 -0.25 -3.06 16 19 C -0.12 -1.65 4.74 -25.35 -0.12 -1.77 16 20 C -0.12 -1.67 7.00 -25.35 -0.18 -1.84 16 21 C 0.03 0.45 7.02 -2.18 -0.02 0.44 16 22 N -0.64 -9.60 6.40 -97.30 -0.62 -10.23 16 23 H 0.05 0.77 7.61 -51.93 -0.40 0.37 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.79 7.00 -51.93 -0.36 0.43 16 26 H 0.08 1.03 4.42 -51.93 -0.23 0.80 16 27 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 28 H 0.03 0.71 5.30 -51.93 -0.28 0.43 16 29 H 0.03 0.87 6.92 -51.93 -0.36 0.51 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 1.78 4.16 -51.93 -0.22 1.56 16 32 H 0.12 2.27 6.29 -51.93 -0.33 1.95 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 36 H 0.08 0.89 7.77 -51.93 -0.40 0.48 16 37 H 0.08 1.22 5.97 -51.93 -0.31 0.91 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.01 7.22 -51.93 -0.37 0.63 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.34 5.53 7.30 -39.29 -0.29 5.24 16 LS Contribution 316.68 15.07 4.77 4.77 Total: -1.00 -32.18 316.68 -8.02 -40.20 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.49 Total: 8.25 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.40 Total: -8.32 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.32 Total: -48.72 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.18 -8.02 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215311377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.180 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds