Wall clock time and date at job start Mon Mar 30 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47224 * 2 1 4 4 C 1.50696 * 110.36919 * 294.37539 * 3 2 1 5 5 O 1.21279 * 120.00025 * 123.69654 * 4 3 2 6 6 N 1.34774 * 120.00022 * 303.69676 * 4 3 2 7 7 C 1.46500 * 120.00254 * 175.04383 * 6 4 3 8 8 C 1.50697 * 109.47551 * 89.99416 * 7 6 4 9 9 H 1.08002 * 119.99950 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00178 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99769 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 119.99968 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47593 * 89.99604 * 12 10 8 14 14 H 1.48508 * 109.47163 * 209.99855 * 12 10 8 15 15 H 1.48510 * 109.47257 * 329.99660 * 12 10 8 16 16 C 1.46501 * 120.00205 * 355.03683 * 6 4 3 17 17 C 1.53001 * 117.50599 * 194.20606 * 16 6 4 18 18 C 1.52997 * 117.49934 * 125.58186 * 16 6 4 19 19 C 1.54384 * 110.41219 * 171.89906 * 3 2 1 20 20 C 1.54259 * 105.06321 * 217.37028 * 19 3 2 21 21 C 1.54384 * 105.05701 * 359.97438 * 20 19 3 22 22 N 1.48555 * 104.59862 * 23.85350 * 21 20 19 23 23 H 1.08997 * 109.46910 * 64.89531 * 1 2 3 24 24 H 1.08998 * 109.47385 * 184.90545 * 1 2 3 25 25 H 1.09006 * 109.46528 * 304.90508 * 1 2 3 26 26 H 1.08997 * 109.46444 * 239.99789 * 2 1 3 27 27 H 1.08998 * 109.46942 * 120.00238 * 2 1 3 28 28 H 1.09004 * 109.47172 * 209.99929 * 7 6 4 29 29 H 1.09003 * 109.47024 * 329.99741 * 7 6 4 30 30 H 0.97006 * 119.99748 * 180.02562 * 11 10 8 31 31 H 1.09007 * 115.54696 * 339.91519 * 16 6 4 32 32 H 1.08998 * 117.49306 * 0.02562 * 17 16 6 33 33 H 1.08993 * 117.49796 * 145.01681 * 17 16 6 34 34 H 1.09000 * 117.50112 * 214.98664 * 18 16 6 35 35 H 1.09005 * 117.49950 * 0.02562 * 18 16 6 36 36 H 1.09004 * 110.31959 * 336.26475 * 19 3 2 37 37 H 1.08997 * 110.32430 * 98.47251 * 19 3 2 38 38 H 1.08999 * 110.32672 * 118.89619 * 20 19 3 39 39 H 1.08997 * 110.32307 * 241.00235 * 20 19 3 40 40 H 1.09003 * 110.41143 * 265.07061 * 21 20 19 41 41 H 1.08998 * 110.40894 * 142.63686 * 21 20 19 42 42 H 1.00896 * 111.00177 * 200.96048 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6652 2.1313 -1.2868 5 8 1.0249 3.1609 -1.2592 6 7 2.0414 1.6032 -2.4683 7 6 1.5861 2.2115 -3.7208 8 6 2.5767 3.2588 -4.1600 9 1 3.4576 3.4517 -3.5657 10 6 2.3589 3.9700 -5.3209 11 7 3.2238 4.8836 -5.7043 12 14 0.8357 3.6358 -6.3491 13 1 -0.2706 4.5167 -5.8959 14 1 1.1330 3.9100 -7.7781 15 1 0.4335 2.2150 -6.1909 16 6 2.9059 0.4208 -2.5001 17 6 3.5675 0.0649 -3.8330 18 6 2.4174 -0.7902 -3.2974 19 6 3.5701 1.4725 0.2039 20 6 3.8317 2.7051 1.0938 21 6 2.4378 3.3164 1.3521 22 7 1.4924 2.1862 1.1633 23 1 -0.3633 0.4360 -0.9306 24 1 -0.3634 -1.0239 0.0879 25 1 -0.3632 0.5881 0.8429 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5050 1.4430 -4.4896 29 1 0.6117 2.6751 -3.5664 30 1 3.0704 5.3842 -6.5210 31 1 3.4728 0.2283 -1.5892 32 1 3.3599 0.7108 -4.6861 33 1 4.5699 -0.3616 -3.7992 34 1 2.6632 -1.7794 -2.9113 35 1 1.4530 -0.7071 -3.7986 36 1 3.9028 0.5647 0.7072 37 1 4.0776 1.5828 -0.7544 38 1 4.2929 2.4024 2.0338 39 1 4.4691 3.4196 0.5729 40 1 2.2311 4.1091 0.6331 41 1 2.3736 3.6997 2.3705 42 1 0.5606 2.5223 0.9717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215311377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:32 Heat of formation + Delta-G solvation = -20.278292 kcal Electronic energy + Delta-G solvation = -22201.759710 eV Core-core repulsion = 19181.895360 eV Total energy + Delta-G solvation = -3019.864350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95149 -38.98927 -38.07363 -35.21249 -34.42403 -33.78614 -31.46266 -30.29379 -28.85245 -25.11023 -24.10978 -24.05548 -23.14659 -21.91051 -21.55397 -19.91239 -19.14420 -18.18705 -17.38098 -16.94026 -16.56032 -16.29001 -15.59006 -15.48299 -15.07036 -14.77949 -14.54217 -14.03855 -14.01023 -13.70541 -13.52934 -13.44599 -13.02730 -12.91145 -12.62231 -12.46377 -12.43843 -12.24046 -12.14696 -11.96005 -11.82760 -11.77360 -11.60347 -11.34196 -11.31288 -10.88128 -10.73733 -9.66996 -9.23557 -8.38238 -6.41946 1.24778 1.28586 1.36510 1.63417 2.15109 2.24320 2.94882 3.05369 3.16599 3.50903 3.59279 3.70724 3.88721 4.02907 4.10071 4.17441 4.19024 4.41694 4.44140 4.61795 4.67419 4.69926 4.80224 4.81303 4.86074 4.90399 4.95339 5.02026 5.06105 5.11859 5.17387 5.19230 5.25476 5.38290 5.39523 5.44143 5.56321 5.65541 6.12318 6.19219 6.58021 6.65693 7.16263 7.32457 8.78683 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.007490 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.554128 B = 3737.261600 C = 4119.776864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.081 3.919 4 C 0.490 3.510 5 O -0.596 6.596 6 N -0.566 5.566 7 C 0.227 3.773 8 C -0.521 4.521 9 H 0.026 0.974 10 C 0.013 3.987 11 N -0.942 5.942 12 Si 0.940 3.060 13 H -0.279 1.279 14 H -0.272 1.272 15 H -0.241 1.241 16 C 0.045 3.955 17 C -0.192 4.192 18 C -0.171 4.171 19 C -0.119 4.119 20 C -0.122 4.122 21 C 0.027 3.973 22 N -0.622 5.622 23 H 0.019 0.981 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.010 0.990 30 H 0.268 0.732 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.011 0.989 41 H 0.101 0.899 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -15.724 12.095 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.014 4.014 4 C 0.278 3.722 5 O -0.477 6.477 6 N -0.294 5.294 7 C 0.105 3.895 8 C -0.560 4.560 9 H 0.045 0.955 10 C -0.185 4.185 11 N -0.583 5.583 12 Si 0.763 3.237 13 H -0.204 1.204 14 H -0.197 1.197 15 H -0.165 1.165 16 C -0.058 4.058 17 C -0.229 4.229 18 C -0.209 4.209 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.103 4.103 22 N -0.250 5.250 23 H 0.039 0.961 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.120 0.880 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.551 -15.502 12.523 19.936 hybrid contribution -0.808 1.863 -1.925 2.798 sum -1.359 -13.639 10.599 17.326 Atomic orbital electron populations 1.21717 0.95963 1.02722 1.00298 1.21798 0.96386 0.91048 1.04960 1.22234 0.97220 0.96549 0.85435 1.22105 0.78775 0.84372 0.86942 1.90620 1.43576 1.25811 1.87682 1.47432 1.47917 1.28274 1.05773 1.19243 0.94011 0.93004 0.83281 1.21379 1.07278 1.19840 1.07458 0.95529 1.25777 0.99654 0.94308 0.98774 1.70042 1.38154 1.25142 1.24923 0.85826 0.79254 0.80377 0.78199 1.20434 1.19654 1.16469 1.22346 0.98264 0.86643 0.98573 1.23390 0.99187 1.03233 0.97122 1.23523 0.98250 0.96207 1.02944 1.22631 0.91366 1.01231 1.00500 1.22316 0.95941 0.96649 1.01070 1.22988 0.93063 0.92900 1.01347 1.64091 1.05656 1.21522 1.33751 0.96135 0.90098 0.92428 0.89020 0.87728 0.93587 0.97229 0.92308 0.82303 0.90595 0.85855 0.84049 0.89971 0.86054 0.91812 0.87821 0.92822 0.97027 0.88045 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 2 C -0.10 -2.30 4.84 30.59 0.15 -2.15 16 3 C 0.08 2.37 0.41 2.93 0.00 2.37 16 4 C 0.49 20.28 5.36 87.66 0.47 20.75 16 5 O -0.60 -30.62 14.48 -3.03 -0.04 -30.67 16 6 N -0.57 -23.36 2.80 -802.14 -2.25 -25.61 16 7 C 0.23 11.32 3.46 85.63 0.30 11.62 16 8 C -0.52 -31.04 9.43 25.60 0.24 -30.80 16 9 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 10 C 0.01 0.78 5.47 84.65 0.46 1.24 16 11 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 12 Si 0.94 45.35 27.47 68.60 1.88 47.24 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 16 C 0.05 1.37 3.62 44.99 0.16 1.53 16 17 C -0.19 -5.77 9.72 30.59 0.30 -5.47 16 18 C -0.17 -4.10 9.29 30.59 0.28 -3.81 16 19 C -0.12 -2.99 4.74 31.49 0.15 -2.84 16 20 C -0.12 -3.12 7.00 31.49 0.22 -2.90 16 21 C 0.03 0.79 7.02 86.45 0.61 1.40 16 22 N -0.62 -18.12 6.40 -461.73 -2.95 -21.08 16 23 H 0.02 0.59 7.61 -2.39 -0.02 0.57 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.38 7.00 -2.38 -0.02 1.36 16 26 H 0.09 1.86 4.42 -2.39 -0.01 1.85 16 27 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 28 H 0.05 2.15 5.30 -2.39 -0.01 2.13 16 29 H 0.01 0.53 6.92 -2.39 -0.02 0.51 16 30 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 31 H 0.16 3.82 4.16 -2.38 -0.01 3.81 16 32 H 0.08 2.97 6.29 -2.39 -0.02 2.95 16 33 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.21 7.79 -2.38 -0.02 2.19 16 36 H 0.12 2.06 7.77 -2.38 -0.02 2.04 16 37 H 0.06 1.84 5.97 -2.39 -0.01 1.83 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.01 0.44 7.22 -2.39 -0.02 0.42 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.34 10.91 7.30 -89.70 -0.66 10.26 16 Total: -1.00 -76.74 316.68 1.27 -75.46 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.31 Total: 26.46 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.02 Total: -11.91 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.90 Total: -106.58 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -76.74 1.27 -75.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215311377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.184 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds