Wall clock time and date at job start Mon Mar 30 2020 04:29:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86805 * 119.99867 * 2 1
4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1
5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1
6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1
7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1
9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1
10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2
11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 7
12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9
13 13 O 1.21282 * 119.99854 * 359.97438 * 12 11 10
14 14 C 1.50702 * 120.00461 * 180.02562 * 12 11 10
15 15 H 1.09004 * 110.65483 * 43.19675 * 14 12 11
16 16 C 1.55520 * 110.74099 * 279.99922 * 14 12 11
17 17 C 1.54052 * 101.13972 * 201.64658 * 16 14 12
18 18 H 1.08997 * 104.97636 * 276.71428 * 17 16 14
19 19 C 1.49256 * 113.47734 * 162.64902 * 17 16 14
20 20 C 1.53523 * 112.80734 * 262.83612 * 19 17 16
21 21 C 1.53516 * 106.91994 * 304.71671 * 20 19 17
22 22 C 1.52219 * 107.88617 * 69.86894 * 21 20 19
23 23 C 1.51043 * 106.42678 * 28.19121 * 17 16 14
24 24 H 1.09001 * 109.03766 * 236.36206 * 23 17 16
25 25 N 1.48596 * 110.74369 * 166.59275 * 14 12 11
26 26 H 0.97002 * 119.99998 * 359.97438 * 1 2 3
27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2
28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2
29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7
30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7
31 31 H 0.97010 * 119.99909 * 359.97438 * 11 10 9
32 32 H 1.08994 * 111.09111 * 319.61438 * 16 14 12
33 33 H 1.09003 * 111.08819 * 83.64093 * 16 14 12
34 34 H 1.08995 * 108.70191 * 22.30037 * 19 17 16
35 35 H 1.08992 * 108.70108 * 140.28992 * 19 17 16
36 36 H 1.09007 * 109.64497 * 185.65204 * 20 19 17
37 37 H 1.09005 * 110.63122 * 64.33272 * 20 19 17
38 38 H 1.09003 * 109.77637 * 310.27948 * 21 20 19
39 39 H 1.08998 * 109.78102 * 189.47028 * 21 20 19
40 40 H 1.08997 * 108.78511 * 180.61755 * 22 21 20
41 41 H 1.09001 * 108.78104 * 62.41509 * 22 21 20
42 42 H 1.00903 * 110.99964 * 276.81050 * 25 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4467 2.6527 0.7001
6 1 3.5467 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5115 -1.1940 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 7 5.4865 -2.6366 -0.0022
12 6 6.1604 -3.8037 -0.0028
13 8 5.5540 -4.8540 -0.0019
14 6 7.6674 -3.8038 -0.0034
15 1 8.0522 -3.0604 0.6948
16 6 8.2176 -3.5509 -1.4359
17 6 9.6369 -4.1381 -1.3176
18 1 10.2352 -3.3418 -0.8751
19 6 10.2778 -4.4145 -2.6369
20 6 10.1402 -5.8810 -3.0698
21 6 10.7162 -6.7381 -1.9340
22 6 9.7667 -6.6422 -0.7481
23 6 9.5654 -5.2194 -0.2654
24 1 10.2931 -5.0030 0.5167
25 7 8.1938 -5.1557 0.3181
26 1 -0.4850 0.8401 0.0004
27 1 3.8752 -0.6803 0.8888
28 1 3.8746 -0.6800 -0.8912
29 1 3.6585 -3.1501 0.8892
30 1 3.6578 -3.1506 -0.8907
31 1 5.9716 -1.7965 -0.0033
32 1 7.6318 -4.0882 -2.1816
33 1 8.2511 -2.4848 -1.6606
34 1 9.7967 -3.7972 -3.3954
35 1 11.3300 -4.1361 -2.5794
36 1 10.7087 -6.0479 -3.9848
37 1 9.0931 -6.1367 -3.2326
38 1 11.6994 -6.3623 -1.6505
39 1 10.7968 -7.7754 -2.2590
40 1 10.1679 -7.2376 0.0719
41 1 8.8002 -7.0545 -1.0381
42 1 8.2178 -5.3065 1.3155
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000226984701.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:20
Heat of formation + Delta-G solvation = -52.718876 kcal
Electronic energy + Delta-G solvation = -20341.294975 eV
Core-core repulsion = 17320.023896 eV
Total energy + Delta-G solvation = -3021.271080 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.44435 -38.71430 -35.36375 -34.79704 -32.81233 -32.48275 -30.44540 -29.22052
-28.22999 -25.17025 -23.21133 -22.25507 -22.19880 -20.75962 -19.69504 -18.51940
-17.28253 -16.86924 -16.72005 -15.58458 -15.14969 -14.91552 -14.55236 -14.36376
-14.11969 -13.75883 -13.49869 -13.15488 -12.74376 -12.69723 -12.56133 -12.41882
-11.91280 -11.84125 -11.50021 -11.46824 -11.19769 -11.11757 -10.71515 -10.38256
-10.34198 -10.25045 -10.20830 -9.96179 -9.42908 -9.25210 -8.63570 -8.60895
-8.47127 -6.10899 -4.10914 2.97543 3.24735 3.32214 3.33527 3.38673
4.13167 4.27976 4.35819 4.37512 4.47521 4.81587 4.89781 4.90022
4.98690 5.06159 5.14234 5.16034 5.21966 5.33987 5.44078 5.57525
5.62647 5.65958 5.76568 5.87875 5.89208 5.96442 6.05700 6.11733
6.14510 6.22987 6.24097 6.57668 6.63084 6.80586 7.12816 7.17190
7.24240 7.67393 7.98243 8.44635 8.67946 8.93878 9.49234 11.02244
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.038312 B = 0.003442 C = 0.003321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.662617 B = 8131.951330 C = 8428.165953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.069 3.931
3 Si 0.882 3.118
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.266 1.266
7 C -0.523 4.523
8 H 0.076 0.924
9 C -0.021 4.021
10 C 0.132 3.868
11 N -0.729 5.729
12 C 0.514 3.486
13 O -0.524 6.524
14 C 0.047 3.953
15 H 0.069 0.931
16 C -0.104 4.104
17 C -0.088 4.088
18 H 0.054 0.946
19 C -0.102 4.102
20 C -0.119 4.119
21 C -0.117 4.117
22 C -0.108 4.108
23 C 0.090 3.910
24 H 0.046 0.954
25 N -0.645 5.645
26 H 0.265 0.735
27 H 0.021 0.979
28 H 0.017 0.983
29 H 0.061 0.939
30 H 0.061 0.939
31 H 0.394 0.606
32 H 0.082 0.918
33 H 0.080 0.920
34 H 0.064 0.936
35 H 0.062 0.938
36 H 0.061 0.939
37 H 0.069 0.931
38 H 0.059 0.941
39 H 0.063 0.937
40 H 0.055 0.945
41 H 0.079 0.921
42 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.306 -7.501 -2.843 26.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.133 4.133
3 Si 0.710 3.290
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.191 1.191
7 C -0.561 4.561
8 H 0.094 0.906
9 C -0.059 4.059
10 C 0.009 3.991
11 N -0.381 5.381
12 C 0.298 3.702
13 O -0.399 6.399
14 C -0.066 4.066
15 H 0.087 0.913
16 C -0.143 4.143
17 C -0.107 4.107
18 H 0.073 0.927
19 C -0.140 4.140
20 C -0.157 4.157
21 C -0.155 4.155
22 C -0.146 4.146
23 C -0.020 4.020
24 H 0.064 0.936
25 N -0.275 5.275
26 H 0.074 0.926
27 H 0.039 0.961
28 H 0.035 0.965
29 H 0.079 0.921
30 H 0.079 0.921
31 H 0.226 0.774
32 H 0.101 0.899
33 H 0.098 0.902
34 H 0.082 0.918
35 H 0.080 0.920
36 H 0.080 0.920
37 H 0.088 0.912
38 H 0.078 0.922
39 H 0.081 0.919
40 H 0.074 0.926
41 H 0.098 0.902
42 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 24.322 -8.512 -3.332 25.983
hybrid contribution 1.034 2.077 0.789 2.451
sum 25.356 -6.434 -2.543 26.283
Atomic orbital electron populations
1.69905 1.06296 1.27039 1.50476 1.25005 0.94762 0.99142 0.94399
0.86748 0.80248 0.83558 0.78492 1.20218 1.21281 1.19114 1.20934
0.88702 0.94898 1.51566 0.90617 1.19789 0.97964 0.91418 0.96742
1.21473 0.76073 0.99980 1.01528 1.46324 1.09036 1.07782 1.74931
1.20179 0.88747 0.84183 0.77139 1.90690 1.69737 1.31255 1.48258
1.22617 0.93400 0.92123 0.98508 0.91275 1.22613 0.95428 1.01090
0.95129 1.20412 0.96652 0.97393 0.96285 0.92698 1.20762 1.00181
0.97433 0.95615 1.21735 1.01664 0.94671 0.97609 1.21477 0.98533
0.99823 0.95625 1.21108 1.00826 0.95140 0.97565 1.21390 0.89456
0.95521 0.95607 0.93570 1.63153 1.19332 1.26631 1.18340 0.92553
0.96083 0.96473 0.92061 0.92066 0.77363 0.89911 0.90167 0.91753
0.91963 0.92022 0.91199 0.92243 0.91858 0.92628 0.90238 0.84399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16
2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16
4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16
7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16
8 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16
9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16
10 C 0.13 2.73 5.61 -4.04 -0.02 2.71 16
11 N -0.73 -12.08 5.56 -60.29 -0.33 -12.41 16
12 C 0.51 8.55 7.20 -10.99 -0.08 8.47 16
13 O -0.52 -11.06 16.56 5.56 0.09 -10.97 16
14 C 0.05 0.57 3.64 -66.58 -0.24 0.33 16
15 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
16 C -0.10 -1.10 5.83 -24.84 -0.14 -1.24 16
17 C -0.09 -0.78 2.43 -92.90 -0.23 -1.01 16
18 H 0.05 0.44 8.01 -51.93 -0.42 0.02 16
19 C -0.10 -0.79 5.43 -28.30 -0.15 -0.94 16
20 C -0.12 -0.95 6.13 -26.19 -0.16 -1.11 16
21 C -0.12 -0.89 5.97 -26.86 -0.16 -1.05 16
22 C -0.11 -1.00 5.41 -27.84 -0.15 -1.15 16
23 C 0.09 0.85 3.53 -68.13 -0.24 0.61 16
24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
25 N -0.64 -7.70 6.10 -98.47 -0.60 -8.30 16
26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
27 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16
28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16
29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16
30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16
31 H 0.39 5.37 8.47 -40.82 -0.35 5.03 16
32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16
35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16
38 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16
39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
41 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16
42 H 0.34 3.72 8.93 -39.29 -0.35 3.37 16
LS Contribution 330.60 15.07 4.98 4.98
Total: -1.00 -32.63 330.60 -9.23 -41.86
By element:
Atomic # 1 Polarization: 10.70 SS G_CDS: -7.35 Total: 3.36 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: -2.13 Total: -8.19 kcal
Atomic # 7 Polarization: -47.26 SS G_CDS: -0.16 Total: -47.42 kcal
Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -32.63 -9.23 -41.86 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226984701.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.862 kcal
(2) G-P(sol) polarization free energy of solvation -32.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds