Wall clock time and date at job start Mon Mar 30 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00461 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.65483 * 43.19675 * 14 12 11 16 16 C 1.55520 * 110.74099 * 279.99922 * 14 12 11 17 17 C 1.54052 * 101.13972 * 201.64658 * 16 14 12 18 18 H 1.08997 * 104.97636 * 276.71428 * 17 16 14 19 19 C 1.49256 * 113.47734 * 162.64902 * 17 16 14 20 20 C 1.53523 * 112.80734 * 262.83612 * 19 17 16 21 21 C 1.53516 * 106.91994 * 304.71671 * 20 19 17 22 22 C 1.52219 * 107.88617 * 69.86894 * 21 20 19 23 23 C 1.51043 * 106.42678 * 28.19121 * 17 16 14 24 24 H 1.09001 * 109.03766 * 236.36206 * 23 17 16 25 25 N 1.48596 * 110.74369 * 166.59275 * 14 12 11 26 26 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 32 32 H 1.08994 * 111.09111 * 319.61438 * 16 14 12 33 33 H 1.09003 * 111.08819 * 83.64093 * 16 14 12 34 34 H 1.08995 * 108.70191 * 22.30037 * 19 17 16 35 35 H 1.08992 * 108.70108 * 140.28992 * 19 17 16 36 36 H 1.09007 * 109.64497 * 185.65204 * 20 19 17 37 37 H 1.09005 * 110.63122 * 64.33272 * 20 19 17 38 38 H 1.09003 * 109.77637 * 310.27948 * 21 20 19 39 39 H 1.08998 * 109.78102 * 189.47028 * 21 20 19 40 40 H 1.08997 * 108.78511 * 180.61755 * 22 21 20 41 41 H 1.09001 * 108.78104 * 62.41509 * 22 21 20 42 42 H 1.00903 * 110.99964 * 276.81050 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8037 -0.0028 13 8 5.5540 -4.8540 -0.0019 14 6 7.6674 -3.8038 -0.0034 15 1 8.0522 -3.0604 0.6948 16 6 8.2176 -3.5509 -1.4359 17 6 9.6369 -4.1381 -1.3176 18 1 10.2352 -3.3418 -0.8751 19 6 10.2778 -4.4145 -2.6369 20 6 10.1402 -5.8810 -3.0698 21 6 10.7162 -6.7381 -1.9340 22 6 9.7667 -6.6422 -0.7481 23 6 9.5654 -5.2194 -0.2654 24 1 10.2931 -5.0030 0.5167 25 7 8.1938 -5.1557 0.3181 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8746 -0.6800 -0.8912 29 1 3.6585 -3.1501 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9716 -1.7965 -0.0033 32 1 7.6318 -4.0882 -2.1816 33 1 8.2511 -2.4848 -1.6606 34 1 9.7967 -3.7972 -3.3954 35 1 11.3300 -4.1361 -2.5794 36 1 10.7087 -6.0479 -3.9848 37 1 9.0931 -6.1367 -3.2326 38 1 11.6994 -6.3623 -1.6505 39 1 10.7968 -7.7754 -2.2590 40 1 10.1679 -7.2376 0.0719 41 1 8.8002 -7.0545 -1.0381 42 1 8.2178 -5.3065 1.3155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226984701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:20 Heat of formation + Delta-G solvation = -52.718876 kcal Electronic energy + Delta-G solvation = -20341.294975 eV Core-core repulsion = 17320.023896 eV Total energy + Delta-G solvation = -3021.271080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44435 -38.71430 -35.36375 -34.79704 -32.81233 -32.48275 -30.44540 -29.22052 -28.22999 -25.17025 -23.21133 -22.25507 -22.19880 -20.75962 -19.69504 -18.51940 -17.28253 -16.86924 -16.72005 -15.58458 -15.14969 -14.91552 -14.55236 -14.36376 -14.11969 -13.75883 -13.49869 -13.15488 -12.74376 -12.69723 -12.56133 -12.41882 -11.91280 -11.84125 -11.50021 -11.46824 -11.19769 -11.11757 -10.71515 -10.38256 -10.34198 -10.25045 -10.20830 -9.96179 -9.42908 -9.25210 -8.63570 -8.60895 -8.47127 -6.10899 -4.10914 2.97543 3.24735 3.32214 3.33527 3.38673 4.13167 4.27976 4.35819 4.37512 4.47521 4.81587 4.89781 4.90022 4.98690 5.06159 5.14234 5.16034 5.21966 5.33987 5.44078 5.57525 5.62647 5.65958 5.76568 5.87875 5.89208 5.96442 6.05700 6.11733 6.14510 6.22987 6.24097 6.57668 6.63084 6.80586 7.12816 7.17190 7.24240 7.67393 7.98243 8.44635 8.67946 8.93878 9.49234 11.02244 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.003442 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.662617 B = 8131.951330 C = 8428.165953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.132 3.868 11 N -0.729 5.729 12 C 0.514 3.486 13 O -0.524 6.524 14 C 0.047 3.953 15 H 0.069 0.931 16 C -0.104 4.104 17 C -0.088 4.088 18 H 0.054 0.946 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.108 4.108 23 C 0.090 3.910 24 H 0.046 0.954 25 N -0.645 5.645 26 H 0.265 0.735 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.306 -7.501 -2.843 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.009 3.991 11 N -0.381 5.381 12 C 0.298 3.702 13 O -0.399 6.399 14 C -0.066 4.066 15 H 0.087 0.913 16 C -0.143 4.143 17 C -0.107 4.107 18 H 0.073 0.927 19 C -0.140 4.140 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.020 4.020 24 H 0.064 0.936 25 N -0.275 5.275 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 24.322 -8.512 -3.332 25.983 hybrid contribution 1.034 2.077 0.789 2.451 sum 25.356 -6.434 -2.543 26.283 Atomic orbital electron populations 1.69905 1.06296 1.27039 1.50476 1.25005 0.94762 0.99142 0.94399 0.86748 0.80248 0.83558 0.78492 1.20218 1.21281 1.19114 1.20934 0.88702 0.94898 1.51566 0.90617 1.19789 0.97964 0.91418 0.96742 1.21473 0.76073 0.99980 1.01528 1.46324 1.09036 1.07782 1.74931 1.20179 0.88747 0.84183 0.77139 1.90690 1.69737 1.31255 1.48258 1.22617 0.93400 0.92123 0.98508 0.91275 1.22613 0.95428 1.01090 0.95129 1.20412 0.96652 0.97393 0.96285 0.92698 1.20762 1.00181 0.97433 0.95615 1.21735 1.01664 0.94671 0.97609 1.21477 0.98533 0.99823 0.95625 1.21108 1.00826 0.95140 0.97565 1.21390 0.89456 0.95521 0.95607 0.93570 1.63153 1.19332 1.26631 1.18340 0.92553 0.96083 0.96473 0.92061 0.92066 0.77363 0.89911 0.90167 0.91753 0.91963 0.92022 0.91199 0.92243 0.91858 0.92628 0.90238 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 8 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.73 5.61 -4.04 -0.02 2.71 16 11 N -0.73 -12.08 5.56 -60.29 -0.33 -12.41 16 12 C 0.51 8.55 7.20 -10.99 -0.08 8.47 16 13 O -0.52 -11.06 16.56 5.56 0.09 -10.97 16 14 C 0.05 0.57 3.64 -66.58 -0.24 0.33 16 15 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 16 C -0.10 -1.10 5.83 -24.84 -0.14 -1.24 16 17 C -0.09 -0.78 2.43 -92.90 -0.23 -1.01 16 18 H 0.05 0.44 8.01 -51.93 -0.42 0.02 16 19 C -0.10 -0.79 5.43 -28.30 -0.15 -0.94 16 20 C -0.12 -0.95 6.13 -26.19 -0.16 -1.11 16 21 C -0.12 -0.89 5.97 -26.86 -0.16 -1.05 16 22 C -0.11 -1.00 5.41 -27.84 -0.15 -1.15 16 23 C 0.09 0.85 3.53 -68.13 -0.24 0.61 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 N -0.64 -7.70 6.10 -98.47 -0.60 -8.30 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.39 5.37 8.47 -40.82 -0.35 5.03 16 32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 42 H 0.34 3.72 8.93 -39.29 -0.35 3.37 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -32.63 330.60 -9.23 -41.86 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.35 Total: 3.36 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.13 Total: -8.19 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.16 Total: -47.42 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.63 -9.23 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226984701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.862 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds