Wall clock time and date at job start Mon Mar 30 2020 04:29:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86805 * 119.99867 * 2 1
4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1
5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1
6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1
7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1
9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1
10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2
11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 7
12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9
13 13 O 1.21282 * 119.99854 * 359.97438 * 12 11 10
14 14 C 1.50702 * 120.00461 * 180.02562 * 12 11 10
15 15 H 1.09004 * 110.65483 * 43.19675 * 14 12 11
16 16 C 1.55520 * 110.74099 * 279.99922 * 14 12 11
17 17 C 1.54052 * 101.13972 * 201.64658 * 16 14 12
18 18 H 1.08997 * 104.97636 * 276.71428 * 17 16 14
19 19 C 1.49256 * 113.47734 * 162.64902 * 17 16 14
20 20 C 1.53523 * 112.80734 * 262.83612 * 19 17 16
21 21 C 1.53516 * 106.91994 * 304.71671 * 20 19 17
22 22 C 1.52219 * 107.88617 * 69.86894 * 21 20 19
23 23 C 1.51043 * 106.42678 * 28.19121 * 17 16 14
24 24 H 1.09001 * 109.03766 * 236.36206 * 23 17 16
25 25 N 1.48596 * 110.74369 * 166.59275 * 14 12 11
26 26 H 0.97002 * 119.99998 * 359.97438 * 1 2 3
27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2
28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2
29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7
30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7
31 31 H 0.97010 * 119.99909 * 359.97438 * 11 10 9
32 32 H 1.08994 * 111.09111 * 319.61438 * 16 14 12
33 33 H 1.09003 * 111.08819 * 83.64093 * 16 14 12
34 34 H 1.08995 * 108.70191 * 22.30037 * 19 17 16
35 35 H 1.08992 * 108.70108 * 140.28992 * 19 17 16
36 36 H 1.09007 * 109.64497 * 185.65204 * 20 19 17
37 37 H 1.09005 * 110.63122 * 64.33272 * 20 19 17
38 38 H 1.09003 * 109.77637 * 310.27948 * 21 20 19
39 39 H 1.08998 * 109.78102 * 189.47028 * 21 20 19
40 40 H 1.08997 * 108.78511 * 180.61755 * 22 21 20
41 41 H 1.09001 * 108.78104 * 62.41509 * 22 21 20
42 42 H 1.00903 * 110.99964 * 276.81050 * 25 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4467 2.6527 0.7001
6 1 3.5467 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5115 -1.1940 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 7 5.4865 -2.6366 -0.0022
12 6 6.1604 -3.8037 -0.0028
13 8 5.5540 -4.8540 -0.0019
14 6 7.6674 -3.8038 -0.0034
15 1 8.0522 -3.0604 0.6948
16 6 8.2176 -3.5509 -1.4359
17 6 9.6369 -4.1381 -1.3176
18 1 10.2352 -3.3418 -0.8751
19 6 10.2778 -4.4145 -2.6369
20 6 10.1402 -5.8810 -3.0698
21 6 10.7162 -6.7381 -1.9340
22 6 9.7667 -6.6422 -0.7481
23 6 9.5654 -5.2194 -0.2654
24 1 10.2931 -5.0030 0.5167
25 7 8.1938 -5.1557 0.3181
26 1 -0.4850 0.8401 0.0004
27 1 3.8752 -0.6803 0.8888
28 1 3.8746 -0.6800 -0.8912
29 1 3.6585 -3.1501 0.8892
30 1 3.6578 -3.1506 -0.8907
31 1 5.9716 -1.7965 -0.0033
32 1 7.6318 -4.0882 -2.1816
33 1 8.2511 -2.4848 -1.6606
34 1 9.7967 -3.7972 -3.3954
35 1 11.3300 -4.1361 -2.5794
36 1 10.7087 -6.0479 -3.9848
37 1 9.0931 -6.1367 -3.2326
38 1 11.6994 -6.3623 -1.6505
39 1 10.7968 -7.7754 -2.2590
40 1 10.1679 -7.2376 0.0719
41 1 8.8002 -7.0545 -1.0381
42 1 8.2178 -5.3065 1.3155
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226984701.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:19
Heat of formation + Delta-G solvation = -76.685443 kcal
Electronic energy + Delta-G solvation = -20342.334243 eV
Core-core repulsion = 17320.023896 eV
Total energy + Delta-G solvation = -3022.310348 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.38075 -39.91525 -36.66319 -35.98951 -34.78536 -33.24774 -32.15366 -30.18705
-29.06893 -26.89850 -24.30217 -23.11988 -22.87886 -22.53890 -21.01954 -19.21094
-19.00001 -18.14291 -17.85629 -16.68221 -16.41123 -16.25207 -16.13891 -15.28873
-15.22097 -14.98731 -14.78038 -14.52213 -14.23706 -13.53700 -13.47918 -13.35410
-13.18033 -13.04246 -12.70424 -12.58419 -12.27092 -12.15497 -12.14656 -11.85168
-11.76199 -11.52723 -11.37356 -11.02894 -10.88508 -10.79476 -10.64695 -10.02952
-9.46631 -8.30683 -6.38425 1.38772 1.41914 1.53184 1.67317 2.15420
2.36688 3.04334 3.21493 3.51008 3.66549 3.72089 3.96802 4.07522
4.18651 4.25876 4.29010 4.38196 4.41426 4.43033 4.49695 4.66435
4.73748 4.78324 4.89130 4.96236 4.97540 5.10217 5.14052 5.15942
5.24688 5.33549 5.39695 5.40556 5.43491 5.48519 5.55924 5.64921
5.85671 6.21577 6.32789 6.65954 6.73421 7.26159 7.36514 8.86382
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.038312 B = 0.003442 C = 0.003321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.662617 B = 8131.951330 C = 8428.165953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C 0.003 3.997
3 Si 0.961 3.039
4 H -0.264 1.264
5 H -0.287 1.287
6 H -0.235 1.235
7 C -0.542 4.542
8 H 0.026 0.974
9 C -0.011 4.011
10 C 0.146 3.854
11 N -0.717 5.717
12 C 0.511 3.489
13 O -0.577 6.577
14 C 0.056 3.944
15 H 0.103 0.897
16 C -0.103 4.103
17 C -0.087 4.087
18 H 0.077 0.923
19 C -0.102 4.102
20 C -0.121 4.121
21 C -0.112 4.112
22 C -0.107 4.107
23 C 0.090 3.910
24 H 0.067 0.933
25 N -0.671 5.671
26 H 0.268 0.732
27 H 0.038 0.962
28 H 0.037 0.963
29 H 0.040 0.960
30 H 0.038 0.962
31 H 0.413 0.587
32 H 0.054 0.946
33 H 0.103 0.897
34 H 0.064 0.936
35 H 0.082 0.918
36 H 0.074 0.926
37 H 0.045 0.955
38 H 0.076 0.924
39 H 0.065 0.935
40 H 0.061 0.939
41 H 0.046 0.954
42 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.440 -5.300 -2.815 30.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.194 4.194
3 Si 0.783 3.217
4 H -0.189 1.189
5 H -0.213 1.213
6 H -0.158 1.158
7 C -0.580 4.580
8 H 0.044 0.956
9 C -0.048 4.048
10 C 0.022 3.978
11 N -0.369 5.369
12 C 0.297 3.703
13 O -0.456 6.456
14 C -0.057 4.057
15 H 0.121 0.879
16 C -0.142 4.142
17 C -0.106 4.106
18 H 0.095 0.905
19 C -0.139 4.139
20 C -0.159 4.159
21 C -0.150 4.150
22 C -0.145 4.145
23 C -0.019 4.019
24 H 0.085 0.915
25 N -0.301 5.301
26 H 0.077 0.923
27 H 0.056 0.944
28 H 0.055 0.945
29 H 0.058 0.942
30 H 0.057 0.943
31 H 0.249 0.751
32 H 0.073 0.927
33 H 0.122 0.878
34 H 0.083 0.917
35 H 0.100 0.900
36 H 0.092 0.908
37 H 0.063 0.937
38 H 0.095 0.905
39 H 0.084 0.916
40 H 0.080 0.920
41 H 0.065 0.935
42 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 28.508 -6.308 -3.305 29.384
hybrid contribution -0.349 1.245 0.774 1.507
sum 28.159 -5.063 -2.531 28.723
Atomic orbital electron populations
1.70083 1.08672 1.28487 1.51956 1.26121 0.95713 1.04000 0.93587
0.85505 0.79675 0.77086 0.79400 1.18880 1.21258 1.15798 1.21276
0.91721 0.93322 1.51671 0.95577 1.19636 0.94303 0.92778 0.98111
1.20977 0.78854 0.98399 0.99557 1.46058 1.07100 1.09097 1.74687
1.21123 0.90874 0.83040 0.75248 1.90670 1.71283 1.33120 1.50486
1.22595 0.89382 0.93277 1.00489 0.87926 1.22664 0.96063 1.02317
0.93110 1.20443 0.95690 0.97639 0.96857 0.90472 1.20788 1.01258
0.96889 0.94998 1.21733 1.00387 0.95343 0.98428 1.21462 0.98728
1.00126 0.94693 1.21098 0.99608 0.95331 0.98490 1.21501 0.88405
0.95661 0.96288 0.91512 1.63086 1.21263 1.26913 1.18858 0.92297
0.94383 0.94510 0.94174 0.94308 0.75053 0.92696 0.87821 0.91746
0.89952 0.90754 0.93661 0.90546 0.91624 0.91996 0.93474 0.84044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16
2 C 0.00 0.16 5.47 84.65 0.46 0.62 16
3 Si 0.96 42.19 27.47 68.60 1.88 44.08 16
4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16
5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16
6 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16
7 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16
8 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16
9 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16
10 C 0.15 6.14 5.61 86.38 0.48 6.62 16
11 N -0.72 -22.76 5.56 -463.06 -2.57 -25.33 16
12 C 0.51 16.73 7.20 87.66 0.63 17.36 16
13 O -0.58 -25.13 16.56 -3.04 -0.05 -25.18 16
14 C 0.06 1.23 3.64 44.71 0.16 1.39 16
15 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16
16 C -0.10 -1.92 5.83 31.82 0.19 -1.74 16
17 C -0.09 -1.26 2.43 -12.27 -0.03 -1.29 16
18 H 0.08 0.83 8.01 -2.39 -0.02 0.81 16
19 C -0.10 -1.27 5.43 29.58 0.16 -1.11 16
20 C -0.12 -1.74 6.13 30.94 0.19 -1.55 16
21 C -0.11 -1.50 5.97 30.51 0.18 -1.32 16
22 C -0.11 -1.85 5.41 29.87 0.16 -1.69 16
23 C 0.09 1.49 3.53 43.37 0.15 1.64 16
24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
25 N -0.67 -15.23 6.10 -465.46 -2.84 -18.07 16
26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
27 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16
28 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16
29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16
30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16
31 H 0.41 9.91 8.47 -92.70 -0.79 9.12 16
32 H 0.05 1.33 8.09 -2.39 -0.02 1.32 16
33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.06 0.82 7.81 -2.39 -0.02 0.80 16
35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16
37 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16
38 H 0.08 0.80 8.07 -2.39 -0.02 0.78 16
39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
41 H 0.05 1.12 7.91 -2.39 -0.02 1.10 16
42 H 0.34 7.11 8.93 -89.69 -0.80 6.31 16
Total: -1.00 -74.85 330.60 -0.80 -75.66
By element:
Atomic # 1 Polarization: 21.52 SS G_CDS: -0.64 Total: 20.88 kcal
Atomic # 6 Polarization: -15.60 SS G_CDS: 3.12 Total: -12.48 kcal
Atomic # 7 Polarization: -97.84 SS G_CDS: -5.11 Total: -102.95 kcal
Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal
Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal
Total: -74.85 -0.80 -75.66 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226984701.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.030 kcal
(2) G-P(sol) polarization free energy of solvation -74.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.655 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds