Wall clock time and date at job start Mon Mar 30 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00461 * 180.02562 * 12 11 10 15 15 H 1.09004 * 110.65483 * 43.19675 * 14 12 11 16 16 C 1.55520 * 110.74099 * 279.99922 * 14 12 11 17 17 C 1.54052 * 101.13972 * 201.64658 * 16 14 12 18 18 H 1.08997 * 104.97636 * 276.71428 * 17 16 14 19 19 C 1.49256 * 113.47734 * 162.64902 * 17 16 14 20 20 C 1.53523 * 112.80734 * 262.83612 * 19 17 16 21 21 C 1.53516 * 106.91994 * 304.71671 * 20 19 17 22 22 C 1.52219 * 107.88617 * 69.86894 * 21 20 19 23 23 C 1.51043 * 106.42678 * 28.19121 * 17 16 14 24 24 H 1.09001 * 109.03766 * 236.36206 * 23 17 16 25 25 N 1.48596 * 110.74369 * 166.59275 * 14 12 11 26 26 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 32 32 H 1.08994 * 111.09111 * 319.61438 * 16 14 12 33 33 H 1.09003 * 111.08819 * 83.64093 * 16 14 12 34 34 H 1.08995 * 108.70191 * 22.30037 * 19 17 16 35 35 H 1.08992 * 108.70108 * 140.28992 * 19 17 16 36 36 H 1.09007 * 109.64497 * 185.65204 * 20 19 17 37 37 H 1.09005 * 110.63122 * 64.33272 * 20 19 17 38 38 H 1.09003 * 109.77637 * 310.27948 * 21 20 19 39 39 H 1.08998 * 109.78102 * 189.47028 * 21 20 19 40 40 H 1.08997 * 108.78511 * 180.61755 * 22 21 20 41 41 H 1.09001 * 108.78104 * 62.41509 * 22 21 20 42 42 H 1.00903 * 110.99964 * 276.81050 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8037 -0.0028 13 8 5.5540 -4.8540 -0.0019 14 6 7.6674 -3.8038 -0.0034 15 1 8.0522 -3.0604 0.6948 16 6 8.2176 -3.5509 -1.4359 17 6 9.6369 -4.1381 -1.3176 18 1 10.2352 -3.3418 -0.8751 19 6 10.2778 -4.4145 -2.6369 20 6 10.1402 -5.8810 -3.0698 21 6 10.7162 -6.7381 -1.9340 22 6 9.7667 -6.6422 -0.7481 23 6 9.5654 -5.2194 -0.2654 24 1 10.2931 -5.0030 0.5167 25 7 8.1938 -5.1557 0.3181 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8746 -0.6800 -0.8912 29 1 3.6585 -3.1501 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9716 -1.7965 -0.0033 32 1 7.6318 -4.0882 -2.1816 33 1 8.2511 -2.4848 -1.6606 34 1 9.7967 -3.7972 -3.3954 35 1 11.3300 -4.1361 -2.5794 36 1 10.7087 -6.0479 -3.9848 37 1 9.0931 -6.1367 -3.2326 38 1 11.6994 -6.3623 -1.6505 39 1 10.7968 -7.7754 -2.2590 40 1 10.1679 -7.2376 0.0719 41 1 8.8002 -7.0545 -1.0381 42 1 8.2178 -5.3065 1.3155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226984701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:19 Heat of formation + Delta-G solvation = -76.685443 kcal Electronic energy + Delta-G solvation = -20342.334243 eV Core-core repulsion = 17320.023896 eV Total energy + Delta-G solvation = -3022.310348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38075 -39.91525 -36.66319 -35.98951 -34.78536 -33.24774 -32.15366 -30.18705 -29.06893 -26.89850 -24.30217 -23.11988 -22.87886 -22.53890 -21.01954 -19.21094 -19.00001 -18.14291 -17.85629 -16.68221 -16.41123 -16.25207 -16.13891 -15.28873 -15.22097 -14.98731 -14.78038 -14.52213 -14.23706 -13.53700 -13.47918 -13.35410 -13.18033 -13.04246 -12.70424 -12.58419 -12.27092 -12.15497 -12.14656 -11.85168 -11.76199 -11.52723 -11.37356 -11.02894 -10.88508 -10.79476 -10.64695 -10.02952 -9.46631 -8.30683 -6.38425 1.38772 1.41914 1.53184 1.67317 2.15420 2.36688 3.04334 3.21493 3.51008 3.66549 3.72089 3.96802 4.07522 4.18651 4.25876 4.29010 4.38196 4.41426 4.43033 4.49695 4.66435 4.73748 4.78324 4.89130 4.96236 4.97540 5.10217 5.14052 5.15942 5.24688 5.33549 5.39695 5.40556 5.43491 5.48519 5.55924 5.64921 5.85671 6.21577 6.32789 6.65954 6.73421 7.26159 7.36514 8.86382 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.003442 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.662617 B = 8131.951330 C = 8428.165953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.026 0.974 9 C -0.011 4.011 10 C 0.146 3.854 11 N -0.717 5.717 12 C 0.511 3.489 13 O -0.577 6.577 14 C 0.056 3.944 15 H 0.103 0.897 16 C -0.103 4.103 17 C -0.087 4.087 18 H 0.077 0.923 19 C -0.102 4.102 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.107 4.107 23 C 0.090 3.910 24 H 0.067 0.933 25 N -0.671 5.671 26 H 0.268 0.732 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.440 -5.300 -2.815 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.048 4.048 10 C 0.022 3.978 11 N -0.369 5.369 12 C 0.297 3.703 13 O -0.456 6.456 14 C -0.057 4.057 15 H 0.121 0.879 16 C -0.142 4.142 17 C -0.106 4.106 18 H 0.095 0.905 19 C -0.139 4.139 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.019 4.019 24 H 0.085 0.915 25 N -0.301 5.301 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.249 0.751 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 28.508 -6.308 -3.305 29.384 hybrid contribution -0.349 1.245 0.774 1.507 sum 28.159 -5.063 -2.531 28.723 Atomic orbital electron populations 1.70083 1.08672 1.28487 1.51956 1.26121 0.95713 1.04000 0.93587 0.85505 0.79675 0.77086 0.79400 1.18880 1.21258 1.15798 1.21276 0.91721 0.93322 1.51671 0.95577 1.19636 0.94303 0.92778 0.98111 1.20977 0.78854 0.98399 0.99557 1.46058 1.07100 1.09097 1.74687 1.21123 0.90874 0.83040 0.75248 1.90670 1.71283 1.33120 1.50486 1.22595 0.89382 0.93277 1.00489 0.87926 1.22664 0.96063 1.02317 0.93110 1.20443 0.95690 0.97639 0.96857 0.90472 1.20788 1.01258 0.96889 0.94998 1.21733 1.00387 0.95343 0.98428 1.21462 0.98728 1.00126 0.94693 1.21098 0.99608 0.95331 0.98490 1.21501 0.88405 0.95661 0.96288 0.91512 1.63086 1.21263 1.26913 1.18858 0.92297 0.94383 0.94510 0.94174 0.94308 0.75053 0.92696 0.87821 0.91746 0.89952 0.90754 0.93661 0.90546 0.91624 0.91996 0.93474 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.96 42.19 27.47 68.60 1.88 44.08 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 7 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16 8 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 9 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 10 C 0.15 6.14 5.61 86.38 0.48 6.62 16 11 N -0.72 -22.76 5.56 -463.06 -2.57 -25.33 16 12 C 0.51 16.73 7.20 87.66 0.63 17.36 16 13 O -0.58 -25.13 16.56 -3.04 -0.05 -25.18 16 14 C 0.06 1.23 3.64 44.71 0.16 1.39 16 15 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 16 C -0.10 -1.92 5.83 31.82 0.19 -1.74 16 17 C -0.09 -1.26 2.43 -12.27 -0.03 -1.29 16 18 H 0.08 0.83 8.01 -2.39 -0.02 0.81 16 19 C -0.10 -1.27 5.43 29.58 0.16 -1.11 16 20 C -0.12 -1.74 6.13 30.94 0.19 -1.55 16 21 C -0.11 -1.50 5.97 30.51 0.18 -1.32 16 22 C -0.11 -1.85 5.41 29.87 0.16 -1.69 16 23 C 0.09 1.49 3.53 43.37 0.15 1.64 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 N -0.67 -15.23 6.10 -465.46 -2.84 -18.07 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 28 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.41 9.91 8.47 -92.70 -0.79 9.12 16 32 H 0.05 1.33 8.09 -2.39 -0.02 1.32 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 0.82 7.81 -2.39 -0.02 0.80 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16 38 H 0.08 0.80 8.07 -2.39 -0.02 0.78 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.12 7.91 -2.39 -0.02 1.10 16 42 H 0.34 7.11 8.93 -89.69 -0.80 6.31 16 Total: -1.00 -74.85 330.60 -0.80 -75.66 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.64 Total: 20.88 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.12 Total: -12.48 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.11 Total: -102.95 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Total: -74.85 -0.80 -75.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226984701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.030 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds