Wall clock time and date at job start Mon Mar 30 2020 04:29:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86795 * 119.99938 * 2 1
4 4 H 1.48499 * 109.47403 * 179.97438 * 3 2 1
5 5 H 1.48509 * 109.47021 * 299.99416 * 3 2 1
6 6 H 1.48499 * 109.47477 * 59.99436 * 3 2 1
7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00055 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.47043 * 180.02562 * 9 7 2
11 11 N 1.46500 * 109.47067 * 179.97438 * 10 9 7
12 12 C 1.34780 * 120.00053 * 179.97438 * 11 10 9
13 13 O 1.21281 * 119.99976 * 0.02562 * 12 11 10
14 14 C 1.50695 * 120.00074 * 179.97438 * 12 11 10
15 15 H 1.08996 * 109.97187 * 41.28721 * 14 12 11
16 16 C 1.54996 * 109.98952 * 280.00383 * 14 12 11
17 17 C 1.52945 * 103.96170 * 243.05190 * 16 14 12
18 18 H 1.08996 * 110.32646 * 89.49068 * 17 16 14
19 19 C 1.51756 * 116.00745 * 216.55375 * 17 16 14
20 20 C 1.53740 * 107.26452 * 177.36039 * 19 17 16
21 21 C 1.52568 * 111.47148 * 302.22683 * 20 19 17
22 22 C 1.53760 * 111.44737 * 54.74509 * 21 20 19
23 23 C 1.51606 * 107.30317 * 302.41456 * 22 21 20
24 24 H 1.08998 * 109.88402 * 305.13969 * 23 22 21
25 25 N 1.46657 * 116.84244 * 179.08257 * 23 22 21
26 26 H 0.97000 * 119.99919 * 0.02562 * 1 2 3
27 27 H 1.09001 * 109.47293 * 59.99860 * 9 7 2
28 28 H 1.08995 * 109.47068 * 299.99898 * 9 7 2
29 29 H 1.08992 * 109.47535 * 59.99775 * 10 9 7
30 30 H 1.09008 * 109.46822 * 299.99518 * 10 9 7
31 31 H 0.96998 * 120.00357 * 0.02562 * 11 10 9
32 32 H 1.09002 * 110.52441 * 124.43097 * 16 14 12
33 33 H 1.08995 * 110.52901 * 1.67450 * 16 14 12
34 34 H 1.09001 * 109.89571 * 296.79704 * 19 17 16
35 35 H 1.08994 * 109.90114 * 57.84736 * 19 17 16
36 36 H 1.08999 * 109.08064 * 62.73960 * 20 19 17
37 37 H 1.09005 * 109.08221 * 181.71312 * 20 19 17
38 38 H 1.09003 * 109.08544 * 294.24183 * 21 20 19
39 39 H 1.09001 * 109.08709 * 175.24803 * 21 20 19
40 40 H 1.09000 * 109.88841 * 182.96948 * 22 21 20
41 41 H 1.09003 * 109.88922 * 61.87024 * 22 21 20
42 42 H 1.00903 * 111.00000 * 319.58858 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6620 0.0018
11 7 1.5127 -4.9307 0.0024
12 6 2.1866 -6.0980 0.0031
13 8 3.3994 -6.0980 0.0036
14 6 1.4331 -7.4030 0.0043
15 1 0.5801 -7.3411 -0.6714
16 6 0.9495 -7.7343 1.4391
17 6 1.6814 -9.0321 1.7848
18 1 2.6429 -8.8125 2.2487
19 6 0.9002 -10.0367 2.6115
20 6 1.7909 -11.2781 2.7823
21 6 2.1982 -11.8631 1.4334
22 6 2.8707 -10.8059 0.5421
23 6 1.8889 -9.6622 0.3800
24 1 0.9402 -10.0393 -0.0018
25 7 2.3314 -8.5186 -0.4246
26 1 -0.4850 0.8400 -0.0004
27 1 0.6246 -2.5571 -0.8897
28 1 0.6240 -2.5567 0.8903
29 1 2.8712 -3.6039 0.8922
30 1 2.8725 -3.6047 -0.8878
31 1 0.5427 -4.9308 0.0016
32 1 -0.1294 -7.8886 1.4527
33 1 1.2319 -6.9404 2.1305
34 1 0.6654 -9.6115 3.5873
35 1 -0.0200 -10.3075 2.0940
36 1 2.6879 -10.9996 3.3354
37 1 1.2451 -12.0332 3.3480
38 1 1.3109 -12.2435 0.9273
39 1 2.8941 -12.6859 1.5972
40 1 3.1033 -11.2359 -0.4321
41 1 3.7836 -10.4467 1.0173
42 1 3.2968 -8.2949 -0.2348
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000226984710.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:24
Heat of formation + Delta-G solvation = -67.349740 kcal
Electronic energy + Delta-G solvation = -20262.676879 eV
Core-core repulsion = 17240.771357 eV
Total energy + Delta-G solvation = -3021.905521 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.65882 -38.78575 -35.42797 -34.79911 -32.89266 -32.07259 -30.11853 -28.88744
-28.20450 -25.06368 -23.38152 -21.75667 -21.33868 -20.92145 -20.55262 -19.61869
-17.13067 -16.44555 -15.61312 -15.45370 -15.31859 -14.74682 -14.72596 -14.45531
-14.28344 -13.88814 -13.60732 -13.17248 -12.96285 -12.61285 -12.31802 -12.09272
-12.00449 -11.73372 -11.31121 -11.21847 -11.06688 -11.00128 -10.80819 -10.66428
-10.63605 -10.36211 -10.26603 -9.80921 -9.46997 -9.19186 -8.71232 -8.57245
-8.38131 -6.10949 -4.13788 2.89189 3.27419 3.34885 3.39564 3.54153
3.97396 4.38552 4.40235 4.44746 4.60157 4.82149 4.84953 4.95401
5.02446 5.07374 5.23747 5.24423 5.26257 5.32039 5.40954 5.52984
5.66043 5.67703 5.74111 5.82694 5.85477 5.92289 5.96603 6.05578
6.19130 6.30143 6.32168 6.60026 6.71157 6.86905 7.31688 7.49729
7.59605 7.87149 7.96872 8.25665 8.58293 8.92394 9.51252 11.00695
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.049406 B = 0.003106 C = 0.003035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.596186 B = 9011.870658 C = 9222.246125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.059 3.941
3 Si 0.897 3.103
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.521 4.521
8 H 0.060 0.940
9 C 0.012 3.988
10 C 0.121 3.879
11 N -0.717 5.717
12 C 0.506 3.494
13 O -0.550 6.550
14 C 0.049 3.951
15 H 0.106 0.894
16 C -0.131 4.131
17 C -0.130 4.130
18 H 0.076 0.924
19 C -0.104 4.104
20 C -0.120 4.120
21 C -0.115 4.115
22 C -0.113 4.113
23 C 0.068 3.932
24 H 0.087 0.913
25 N -0.642 5.642
26 H 0.262 0.738
27 H 0.023 0.977
28 H 0.022 0.978
29 H 0.055 0.945
30 H 0.057 0.943
31 H 0.399 0.601
32 H 0.080 0.920
33 H 0.074 0.926
34 H 0.063 0.937
35 H 0.066 0.934
36 H 0.060 0.940
37 H 0.061 0.939
38 H 0.062 0.938
39 H 0.063 0.937
40 H 0.071 0.929
41 H 0.064 0.936
42 H 0.351 0.649
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.375 -22.692 4.084 23.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.724 3.276
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.560 4.560
8 H 0.078 0.922
9 C -0.025 4.025
10 C -0.001 4.001
11 N -0.367 5.367
12 C 0.291 3.709
13 O -0.428 6.428
14 C -0.064 4.064
15 H 0.124 0.876
16 C -0.171 4.171
17 C -0.150 4.150
18 H 0.095 0.905
19 C -0.141 4.141
20 C -0.158 4.158
21 C -0.153 4.153
22 C -0.151 4.151
23 C -0.042 4.042
24 H 0.105 0.895
25 N -0.273 5.273
26 H 0.071 0.929
27 H 0.041 0.959
28 H 0.040 0.960
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.232 0.768
32 H 0.099 0.901
33 H 0.093 0.907
34 H 0.082 0.918
35 H 0.085 0.915
36 H 0.078 0.922
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.082 0.918
40 H 0.090 0.910
41 H 0.083 0.917
42 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 0.055 -22.713 3.403 22.967
hybrid contribution 0.186 1.305 0.930 1.613
sum 0.241 -21.408 4.333 21.843
Atomic orbital electron populations
1.69963 1.06089 1.26785 1.50447 1.24997 0.94901 0.99437 0.94977
0.86457 0.80170 0.83316 0.77631 1.19582 1.20899 1.20931 1.21089
0.93280 0.90382 1.51251 0.92212 1.19327 0.94187 0.91116 0.97867
1.21741 0.96076 0.81493 1.00787 1.46293 1.10586 1.06470 1.73309
1.20541 0.88242 0.85721 0.76432 1.90647 1.13997 1.87433 1.50733
1.22942 0.96849 0.90010 0.96641 0.87581 1.22501 1.01106 0.97879
0.95572 1.22527 0.99987 0.94456 0.98034 0.90532 1.21347 0.98127
0.94774 0.99898 1.21558 0.99719 0.97257 0.97218 1.21494 1.00497
0.97728 0.95568 1.21446 0.98036 0.95445 1.00145 1.22411 0.99375
0.92004 0.90452 0.89521 1.63347 1.08409 1.02179 1.53347 0.92883
0.95876 0.95952 0.92626 0.92481 0.76770 0.90102 0.90693 0.91793
0.91515 0.92162 0.91987 0.91947 0.91844 0.91040 0.91685 0.82935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16
4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16
8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16
9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16
10 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16
11 N -0.72 -12.45 5.56 -60.30 -0.33 -12.79 16
12 C 0.51 8.56 6.90 -10.99 -0.08 8.49 16
13 O -0.55 -11.24 15.64 5.56 0.09 -11.16 16
14 C 0.05 0.63 3.80 -66.35 -0.25 0.38 16
15 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16
16 C -0.13 -1.42 6.23 -25.71 -0.16 -1.59 16
17 C -0.13 -1.29 2.54 -90.03 -0.23 -1.52 16
18 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16
19 C -0.10 -0.82 5.61 -26.98 -0.15 -0.97 16
20 C -0.12 -0.85 5.85 -26.57 -0.16 -1.01 16
21 C -0.11 -0.81 5.84 -26.56 -0.16 -0.96 16
22 C -0.11 -0.97 5.85 -27.04 -0.16 -1.13 16
23 C 0.07 0.69 2.66 -67.30 -0.18 0.51 16
24 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16
25 N -0.64 -8.27 7.38 -97.58 -0.72 -8.99 16
26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
30 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16
31 H 0.40 5.97 8.47 -40.82 -0.35 5.62 16
32 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16
33 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16
34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16
36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
41 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16
42 H 0.35 5.06 7.31 -39.29 -0.29 4.78 16
LS Contribution 332.58 15.07 5.01 5.01
Total: -1.00 -30.66 332.58 -9.65 -40.30
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -7.31 Total: 4.92 kcal
Atomic # 6 Polarization: -6.23 SS G_CDS: -2.09 Total: -8.32 kcal
Atomic # 7 Polarization: -46.82 SS G_CDS: -0.32 Total: -47.13 kcal
Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -30.66 -9.65 -40.30 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226984710.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.049 kcal
(2) G-P(sol) polarization free energy of solvation -30.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.705 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds