Wall clock time and date at job start Mon Mar 30 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47021 * 299.99416 * 3 2 1 6 6 H 1.48499 * 109.47477 * 59.99436 * 3 2 1 7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47043 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00053 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00074 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.97187 * 41.28721 * 14 12 11 16 16 C 1.54996 * 109.98952 * 280.00383 * 14 12 11 17 17 C 1.52945 * 103.96170 * 243.05190 * 16 14 12 18 18 H 1.08996 * 110.32646 * 89.49068 * 17 16 14 19 19 C 1.51756 * 116.00745 * 216.55375 * 17 16 14 20 20 C 1.53740 * 107.26452 * 177.36039 * 19 17 16 21 21 C 1.52568 * 111.47148 * 302.22683 * 20 19 17 22 22 C 1.53760 * 111.44737 * 54.74509 * 21 20 19 23 23 C 1.51606 * 107.30317 * 302.41456 * 22 21 20 24 24 H 1.08998 * 109.88402 * 305.13969 * 23 22 21 25 25 N 1.46657 * 116.84244 * 179.08257 * 23 22 21 26 26 H 0.97000 * 119.99919 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47293 * 59.99860 * 9 7 2 28 28 H 1.08995 * 109.47068 * 299.99898 * 9 7 2 29 29 H 1.08992 * 109.47535 * 59.99775 * 10 9 7 30 30 H 1.09008 * 109.46822 * 299.99518 * 10 9 7 31 31 H 0.96998 * 120.00357 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.52441 * 124.43097 * 16 14 12 33 33 H 1.08995 * 110.52901 * 1.67450 * 16 14 12 34 34 H 1.09001 * 109.89571 * 296.79704 * 19 17 16 35 35 H 1.08994 * 109.90114 * 57.84736 * 19 17 16 36 36 H 1.08999 * 109.08064 * 62.73960 * 20 19 17 37 37 H 1.09005 * 109.08221 * 181.71312 * 20 19 17 38 38 H 1.09003 * 109.08544 * 294.24183 * 21 20 19 39 39 H 1.09001 * 109.08709 * 175.24803 * 21 20 19 40 40 H 1.09000 * 109.88841 * 182.96948 * 22 21 20 41 41 H 1.09003 * 109.88922 * 61.87024 * 22 21 20 42 42 H 1.00903 * 111.00000 * 319.58858 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5127 -4.9307 0.0024 12 6 2.1866 -6.0980 0.0031 13 8 3.3994 -6.0980 0.0036 14 6 1.4331 -7.4030 0.0043 15 1 0.5801 -7.3411 -0.6714 16 6 0.9495 -7.7343 1.4391 17 6 1.6814 -9.0321 1.7848 18 1 2.6429 -8.8125 2.2487 19 6 0.9002 -10.0367 2.6115 20 6 1.7909 -11.2781 2.7823 21 6 2.1982 -11.8631 1.4334 22 6 2.8707 -10.8059 0.5421 23 6 1.8889 -9.6622 0.3800 24 1 0.9402 -10.0393 -0.0018 25 7 2.3314 -8.5186 -0.4246 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.5427 -4.9308 0.0016 32 1 -0.1294 -7.8886 1.4527 33 1 1.2319 -6.9404 2.1305 34 1 0.6654 -9.6115 3.5873 35 1 -0.0200 -10.3075 2.0940 36 1 2.6879 -10.9996 3.3354 37 1 1.2451 -12.0332 3.3480 38 1 1.3109 -12.2435 0.9273 39 1 2.8941 -12.6859 1.5972 40 1 3.1033 -11.2359 -0.4321 41 1 3.7836 -10.4467 1.0173 42 1 3.2968 -8.2949 -0.2348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226984710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:24 Heat of formation + Delta-G solvation = -67.349740 kcal Electronic energy + Delta-G solvation = -20262.676879 eV Core-core repulsion = 17240.771357 eV Total energy + Delta-G solvation = -3021.905521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65882 -38.78575 -35.42797 -34.79911 -32.89266 -32.07259 -30.11853 -28.88744 -28.20450 -25.06368 -23.38152 -21.75667 -21.33868 -20.92145 -20.55262 -19.61869 -17.13067 -16.44555 -15.61312 -15.45370 -15.31859 -14.74682 -14.72596 -14.45531 -14.28344 -13.88814 -13.60732 -13.17248 -12.96285 -12.61285 -12.31802 -12.09272 -12.00449 -11.73372 -11.31121 -11.21847 -11.06688 -11.00128 -10.80819 -10.66428 -10.63605 -10.36211 -10.26603 -9.80921 -9.46997 -9.19186 -8.71232 -8.57245 -8.38131 -6.10949 -4.13788 2.89189 3.27419 3.34885 3.39564 3.54153 3.97396 4.38552 4.40235 4.44746 4.60157 4.82149 4.84953 4.95401 5.02446 5.07374 5.23747 5.24423 5.26257 5.32039 5.40954 5.52984 5.66043 5.67703 5.74111 5.82694 5.85477 5.92289 5.96603 6.05578 6.19130 6.30143 6.32168 6.60026 6.71157 6.86905 7.31688 7.49729 7.59605 7.87149 7.96872 8.25665 8.58293 8.92394 9.51252 11.00695 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049406 B = 0.003106 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.596186 B = 9011.870658 C = 9222.246125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.506 3.494 13 O -0.550 6.550 14 C 0.049 3.951 15 H 0.106 0.894 16 C -0.131 4.131 17 C -0.130 4.130 18 H 0.076 0.924 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.113 4.113 23 C 0.068 3.932 24 H 0.087 0.913 25 N -0.642 5.642 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -22.692 4.084 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.291 3.709 13 O -0.428 6.428 14 C -0.064 4.064 15 H 0.124 0.876 16 C -0.171 4.171 17 C -0.150 4.150 18 H 0.095 0.905 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.042 4.042 24 H 0.105 0.895 25 N -0.273 5.273 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.055 -22.713 3.403 22.967 hybrid contribution 0.186 1.305 0.930 1.613 sum 0.241 -21.408 4.333 21.843 Atomic orbital electron populations 1.69963 1.06089 1.26785 1.50447 1.24997 0.94901 0.99437 0.94977 0.86457 0.80170 0.83316 0.77631 1.19582 1.20899 1.20931 1.21089 0.93280 0.90382 1.51251 0.92212 1.19327 0.94187 0.91116 0.97867 1.21741 0.96076 0.81493 1.00787 1.46293 1.10586 1.06470 1.73309 1.20541 0.88242 0.85721 0.76432 1.90647 1.13997 1.87433 1.50733 1.22942 0.96849 0.90010 0.96641 0.87581 1.22501 1.01106 0.97879 0.95572 1.22527 0.99987 0.94456 0.98034 0.90532 1.21347 0.98127 0.94774 0.99898 1.21558 0.99719 0.97257 0.97218 1.21494 1.00497 0.97728 0.95568 1.21446 0.98036 0.95445 1.00145 1.22411 0.99375 0.92004 0.90452 0.89521 1.63347 1.08409 1.02179 1.53347 0.92883 0.95876 0.95952 0.92626 0.92481 0.76770 0.90102 0.90693 0.91793 0.91515 0.92162 0.91987 0.91947 0.91844 0.91040 0.91685 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 11 N -0.72 -12.45 5.56 -60.30 -0.33 -12.79 16 12 C 0.51 8.56 6.90 -10.99 -0.08 8.49 16 13 O -0.55 -11.24 15.64 5.56 0.09 -11.16 16 14 C 0.05 0.63 3.80 -66.35 -0.25 0.38 16 15 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -1.42 6.23 -25.71 -0.16 -1.59 16 17 C -0.13 -1.29 2.54 -90.03 -0.23 -1.52 16 18 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 19 C -0.10 -0.82 5.61 -26.98 -0.15 -0.97 16 20 C -0.12 -0.85 5.85 -26.57 -0.16 -1.01 16 21 C -0.11 -0.81 5.84 -26.56 -0.16 -0.96 16 22 C -0.11 -0.97 5.85 -27.04 -0.16 -1.13 16 23 C 0.07 0.69 2.66 -67.30 -0.18 0.51 16 24 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 25 N -0.64 -8.27 7.38 -97.58 -0.72 -8.99 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 31 H 0.40 5.97 8.47 -40.82 -0.35 5.62 16 32 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 42 H 0.35 5.06 7.31 -39.29 -0.29 4.78 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -30.66 332.58 -9.65 -40.30 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.31 Total: 4.92 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.09 Total: -8.32 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.32 Total: -47.13 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.66 -9.65 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226984710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.049 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds