Wall clock time and date at job start Mon Mar 30 2020 04:29:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86795 * 119.99938 * 2 1
4 4 H 1.48499 * 109.47403 * 179.97438 * 3 2 1
5 5 H 1.48509 * 109.47021 * 299.99416 * 3 2 1
6 6 H 1.48499 * 109.47477 * 59.99436 * 3 2 1
7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00055 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.47043 * 180.02562 * 9 7 2
11 11 N 1.46500 * 109.47067 * 179.97438 * 10 9 7
12 12 C 1.34780 * 120.00053 * 179.97438 * 11 10 9
13 13 O 1.21281 * 119.99976 * 0.02562 * 12 11 10
14 14 C 1.50695 * 120.00074 * 179.97438 * 12 11 10
15 15 H 1.08996 * 109.97187 * 41.28721 * 14 12 11
16 16 C 1.54996 * 109.98952 * 280.00383 * 14 12 11
17 17 C 1.52945 * 103.96170 * 243.05190 * 16 14 12
18 18 H 1.08996 * 110.32646 * 89.49068 * 17 16 14
19 19 C 1.51756 * 116.00745 * 216.55375 * 17 16 14
20 20 C 1.53740 * 107.26452 * 177.36039 * 19 17 16
21 21 C 1.52568 * 111.47148 * 302.22683 * 20 19 17
22 22 C 1.53760 * 111.44737 * 54.74509 * 21 20 19
23 23 C 1.51606 * 107.30317 * 302.41456 * 22 21 20
24 24 H 1.08998 * 109.88402 * 305.13969 * 23 22 21
25 25 N 1.46657 * 116.84244 * 179.08257 * 23 22 21
26 26 H 0.97000 * 119.99919 * 0.02562 * 1 2 3
27 27 H 1.09001 * 109.47293 * 59.99860 * 9 7 2
28 28 H 1.08995 * 109.47068 * 299.99898 * 9 7 2
29 29 H 1.08992 * 109.47535 * 59.99775 * 10 9 7
30 30 H 1.09008 * 109.46822 * 299.99518 * 10 9 7
31 31 H 0.96998 * 120.00357 * 0.02562 * 11 10 9
32 32 H 1.09002 * 110.52441 * 124.43097 * 16 14 12
33 33 H 1.08995 * 110.52901 * 1.67450 * 16 14 12
34 34 H 1.09001 * 109.89571 * 296.79704 * 19 17 16
35 35 H 1.08994 * 109.90114 * 57.84736 * 19 17 16
36 36 H 1.08999 * 109.08064 * 62.73960 * 20 19 17
37 37 H 1.09005 * 109.08221 * 181.71312 * 20 19 17
38 38 H 1.09003 * 109.08544 * 294.24183 * 21 20 19
39 39 H 1.09001 * 109.08709 * 175.24803 * 21 20 19
40 40 H 1.09000 * 109.88841 * 182.96948 * 22 21 20
41 41 H 1.09003 * 109.88922 * 61.87024 * 22 21 20
42 42 H 1.00903 * 111.00000 * 319.58858 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2126
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6620 0.0018
11 7 1.5127 -4.9307 0.0024
12 6 2.1866 -6.0980 0.0031
13 8 3.3994 -6.0980 0.0036
14 6 1.4331 -7.4030 0.0043
15 1 0.5801 -7.3411 -0.6714
16 6 0.9495 -7.7343 1.4391
17 6 1.6814 -9.0321 1.7848
18 1 2.6429 -8.8125 2.2487
19 6 0.9002 -10.0367 2.6115
20 6 1.7909 -11.2781 2.7823
21 6 2.1982 -11.8631 1.4334
22 6 2.8707 -10.8059 0.5421
23 6 1.8889 -9.6622 0.3800
24 1 0.9402 -10.0393 -0.0018
25 7 2.3314 -8.5186 -0.4246
26 1 -0.4850 0.8400 -0.0004
27 1 0.6246 -2.5571 -0.8897
28 1 0.6240 -2.5567 0.8903
29 1 2.8712 -3.6039 0.8922
30 1 2.8725 -3.6047 -0.8878
31 1 0.5427 -4.9308 0.0016
32 1 -0.1294 -7.8886 1.4527
33 1 1.2319 -6.9404 2.1305
34 1 0.6654 -9.6115 3.5873
35 1 -0.0200 -10.3075 2.0940
36 1 2.6879 -10.9996 3.3354
37 1 1.2451 -12.0332 3.3480
38 1 1.3109 -12.2435 0.9273
39 1 2.8941 -12.6859 1.5972
40 1 3.1033 -11.2359 -0.4321
41 1 3.7836 -10.4467 1.0173
42 1 3.2968 -8.2949 -0.2348
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226984710.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:23
Heat of formation + Delta-G solvation = -88.417150 kcal
Electronic energy + Delta-G solvation = -20263.590430 eV
Core-core repulsion = 17240.771357 eV
Total energy + Delta-G solvation = -3022.819073 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.68213 -40.00267 -36.73757 -36.05936 -34.86279 -32.87052 -31.79570 -29.90120
-29.12875 -26.84172 -24.57512 -22.88753 -22.45941 -22.12516 -21.43141 -20.76116
-18.63613 -18.21471 -17.01006 -16.67204 -16.53946 -16.19879 -15.74415 -15.57103
-15.29225 -15.03379 -14.74582 -14.38481 -14.32404 -13.98197 -13.50519 -13.24217
-12.98664 -12.90766 -12.78841 -12.56636 -12.51076 -12.27577 -12.02699 -11.80607
-11.66621 -11.47076 -11.41819 -11.35719 -10.99016 -10.80854 -10.62731 -10.08239
-9.65464 -8.25944 -6.36446 1.39785 1.40879 1.53094 1.53925 2.15657
2.42327 3.04270 3.08846 3.58849 3.63273 3.76417 3.82268 4.11175
4.19815 4.24403 4.34957 4.44247 4.44509 4.46752 4.52514 4.58471
4.64505 4.81890 4.83221 4.87629 4.95402 5.04150 5.16519 5.22685
5.24325 5.27498 5.28275 5.40775 5.45976 5.51360 5.55712 5.70999
5.76751 6.14055 6.24196 6.56385 6.76733 7.18721 7.33043 8.86076
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.049406 B = 0.003106 C = 0.003035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.596186 B = 9011.870658 C = 9222.246125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.008 3.992
3 Si 0.965 3.035
4 H -0.267 1.267
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.548 4.548
8 H 0.057 0.943
9 C 0.024 3.976
10 C 0.141 3.859
11 N -0.712 5.712
12 C 0.505 3.495
13 O -0.587 6.587
14 C 0.056 3.944
15 H 0.126 0.874
16 C -0.127 4.127
17 C -0.125 4.125
18 H 0.056 0.944
19 C -0.100 4.100
20 C -0.119 4.119
21 C -0.110 4.110
22 C -0.112 4.112
23 C 0.069 3.931
24 H 0.098 0.902
25 N -0.653 5.653
26 H 0.266 0.734
27 H 0.009 0.991
28 H 0.010 0.990
29 H 0.045 0.955
30 H 0.045 0.955
31 H 0.412 0.588
32 H 0.106 0.894
33 H 0.059 0.941
34 H 0.065 0.935
35 H 0.079 0.921
36 H 0.052 0.948
37 H 0.077 0.923
38 H 0.072 0.928
39 H 0.073 0.927
40 H 0.072 0.928
41 H 0.054 0.946
42 H 0.339 0.661
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.062 -23.826 4.385 24.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.191 4.191
3 Si 0.789 3.211
4 H -0.191 1.191
5 H -0.202 1.202
6 H -0.201 1.201
7 C -0.586 4.586
8 H 0.075 0.925
9 C -0.014 4.014
10 C 0.017 3.983
11 N -0.362 5.362
12 C 0.292 3.708
13 O -0.468 6.468
14 C -0.057 4.057
15 H 0.144 0.856
16 C -0.167 4.167
17 C -0.146 4.146
18 H 0.075 0.925
19 C -0.138 4.138
20 C -0.157 4.157
21 C -0.148 4.148
22 C -0.150 4.150
23 C -0.041 4.041
24 H 0.116 0.884
25 N -0.283 5.283
26 H 0.075 0.925
27 H 0.028 0.972
28 H 0.028 0.972
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.248 0.752
32 H 0.125 0.875
33 H 0.078 0.922
34 H 0.084 0.916
35 H 0.097 0.903
36 H 0.071 0.929
37 H 0.095 0.905
38 H 0.090 0.910
39 H 0.091 0.909
40 H 0.090 0.910
41 H 0.073 0.927
42 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -0.662 -23.875 3.707 24.170
hybrid contribution 0.405 1.626 0.828 1.869
sum -0.258 -22.249 4.534 22.708
Atomic orbital electron populations
1.70057 1.07494 1.27980 1.50972 1.25861 0.95812 1.03073 0.94379
0.85399 0.78918 0.78781 0.77964 1.19076 1.20150 1.20129 1.21490
0.93536 0.91995 1.51577 0.92461 1.19126 0.94169 0.91646 0.96441
1.21228 0.95087 0.82334 0.99670 1.46099 1.11165 1.05466 1.73487
1.21288 0.87972 0.86664 0.74862 1.90628 1.15903 1.88036 1.52228
1.23012 0.96637 0.87477 0.98558 0.85632 1.22520 1.02684 0.97820
0.93646 1.22476 0.99341 0.94495 0.98251 0.92501 1.21349 0.98375
0.94359 0.99682 1.21563 0.99471 0.97276 0.97380 1.21476 1.00953
0.97273 0.95138 1.21454 0.97509 0.95427 1.00574 1.22515 1.00084
0.91515 0.90029 0.88441 1.63434 1.07672 1.02910 1.54235 0.92488
0.97234 0.97170 0.93672 0.93706 0.75196 0.87517 0.92229 0.91585
0.90270 0.92918 0.90469 0.90967 0.90881 0.90964 0.92731 0.84255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16
2 C 0.01 0.43 5.46 84.65 0.46 0.89 16
3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16
4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16
7 C -0.55 -30.79 9.11 25.60 0.23 -30.55 16
8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16
9 C 0.02 1.19 5.09 29.85 0.15 1.35 16
10 C 0.14 6.13 5.61 86.38 0.48 6.61 16
11 N -0.71 -24.78 5.56 -463.06 -2.57 -27.35 16
12 C 0.51 17.12 6.90 87.66 0.61 17.73 16
13 O -0.59 -24.53 15.64 -3.03 -0.05 -24.58 16
14 C 0.06 1.38 3.80 44.34 0.17 1.55 16
15 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16
16 C -0.13 -2.57 6.23 31.26 0.19 -2.38 16
17 C -0.13 -2.32 2.54 -10.41 -0.03 -2.34 16
18 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16
19 C -0.10 -1.34 5.61 30.43 0.17 -1.17 16
20 C -0.12 -1.42 5.85 30.70 0.18 -1.24 16
21 C -0.11 -1.29 5.84 30.71 0.18 -1.11 16
22 C -0.11 -1.78 5.85 30.39 0.18 -1.61 16
23 C 0.07 1.28 2.66 45.31 0.12 1.40 16
24 H 0.10 1.65 7.99 -2.39 -0.02 1.63 16
25 N -0.65 -16.34 7.38 -462.62 -3.42 -19.75 16
26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16
27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16
30 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16
31 H 0.41 12.14 8.47 -92.71 -0.79 11.35 16
32 H 0.11 1.63 8.05 -2.39 -0.02 1.61 16
33 H 0.06 1.40 7.71 -2.39 -0.02 1.38 16
34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
35 H 0.08 0.90 8.03 -2.39 -0.02 0.88 16
36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16
38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
41 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16
42 H 0.34 9.92 7.31 -89.69 -0.66 9.26 16
Total: -1.00 -65.79 332.58 -1.06 -66.85
By element:
Atomic # 1 Polarization: 24.29 SS G_CDS: -0.44 Total: 23.85 kcal
Atomic # 6 Polarization: -13.99 SS G_CDS: 3.10 Total: -10.88 kcal
Atomic # 7 Polarization: -95.30 SS G_CDS: -5.70 Total: -101.01 kcal
Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -65.79 -1.06 -66.85 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226984710.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.567 kcal
(2) G-P(sol) polarization free energy of solvation -65.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds