Wall clock time and date at job start Mon Mar 30 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47021 * 299.99416 * 3 2 1 6 6 H 1.48499 * 109.47477 * 59.99436 * 3 2 1 7 7 C 1.37872 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47043 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00053 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00074 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.97187 * 41.28721 * 14 12 11 16 16 C 1.54996 * 109.98952 * 280.00383 * 14 12 11 17 17 C 1.52945 * 103.96170 * 243.05190 * 16 14 12 18 18 H 1.08996 * 110.32646 * 89.49068 * 17 16 14 19 19 C 1.51756 * 116.00745 * 216.55375 * 17 16 14 20 20 C 1.53740 * 107.26452 * 177.36039 * 19 17 16 21 21 C 1.52568 * 111.47148 * 302.22683 * 20 19 17 22 22 C 1.53760 * 111.44737 * 54.74509 * 21 20 19 23 23 C 1.51606 * 107.30317 * 302.41456 * 22 21 20 24 24 H 1.08998 * 109.88402 * 305.13969 * 23 22 21 25 25 N 1.46657 * 116.84244 * 179.08257 * 23 22 21 26 26 H 0.97000 * 119.99919 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47293 * 59.99860 * 9 7 2 28 28 H 1.08995 * 109.47068 * 299.99898 * 9 7 2 29 29 H 1.08992 * 109.47535 * 59.99775 * 10 9 7 30 30 H 1.09008 * 109.46822 * 299.99518 * 10 9 7 31 31 H 0.96998 * 120.00357 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.52441 * 124.43097 * 16 14 12 33 33 H 1.08995 * 110.52901 * 1.67450 * 16 14 12 34 34 H 1.09001 * 109.89571 * 296.79704 * 19 17 16 35 35 H 1.08994 * 109.90114 * 57.84736 * 19 17 16 36 36 H 1.08999 * 109.08064 * 62.73960 * 20 19 17 37 37 H 1.09005 * 109.08221 * 181.71312 * 20 19 17 38 38 H 1.09003 * 109.08544 * 294.24183 * 21 20 19 39 39 H 1.09001 * 109.08709 * 175.24803 * 21 20 19 40 40 H 1.09000 * 109.88841 * 182.96948 * 22 21 20 41 41 H 1.09003 * 109.88922 * 61.87024 * 22 21 20 42 42 H 1.00903 * 111.00000 * 319.58858 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5127 -4.9307 0.0024 12 6 2.1866 -6.0980 0.0031 13 8 3.3994 -6.0980 0.0036 14 6 1.4331 -7.4030 0.0043 15 1 0.5801 -7.3411 -0.6714 16 6 0.9495 -7.7343 1.4391 17 6 1.6814 -9.0321 1.7848 18 1 2.6429 -8.8125 2.2487 19 6 0.9002 -10.0367 2.6115 20 6 1.7909 -11.2781 2.7823 21 6 2.1982 -11.8631 1.4334 22 6 2.8707 -10.8059 0.5421 23 6 1.8889 -9.6622 0.3800 24 1 0.9402 -10.0393 -0.0018 25 7 2.3314 -8.5186 -0.4246 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.5427 -4.9308 0.0016 32 1 -0.1294 -7.8886 1.4527 33 1 1.2319 -6.9404 2.1305 34 1 0.6654 -9.6115 3.5873 35 1 -0.0200 -10.3075 2.0940 36 1 2.6879 -10.9996 3.3354 37 1 1.2451 -12.0332 3.3480 38 1 1.3109 -12.2435 0.9273 39 1 2.8941 -12.6859 1.5972 40 1 3.1033 -11.2359 -0.4321 41 1 3.7836 -10.4467 1.0173 42 1 3.2968 -8.2949 -0.2348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226984710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:23 Heat of formation + Delta-G solvation = -88.417150 kcal Electronic energy + Delta-G solvation = -20263.590430 eV Core-core repulsion = 17240.771357 eV Total energy + Delta-G solvation = -3022.819073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68213 -40.00267 -36.73757 -36.05936 -34.86279 -32.87052 -31.79570 -29.90120 -29.12875 -26.84172 -24.57512 -22.88753 -22.45941 -22.12516 -21.43141 -20.76116 -18.63613 -18.21471 -17.01006 -16.67204 -16.53946 -16.19879 -15.74415 -15.57103 -15.29225 -15.03379 -14.74582 -14.38481 -14.32404 -13.98197 -13.50519 -13.24217 -12.98664 -12.90766 -12.78841 -12.56636 -12.51076 -12.27577 -12.02699 -11.80607 -11.66621 -11.47076 -11.41819 -11.35719 -10.99016 -10.80854 -10.62731 -10.08239 -9.65464 -8.25944 -6.36446 1.39785 1.40879 1.53094 1.53925 2.15657 2.42327 3.04270 3.08846 3.58849 3.63273 3.76417 3.82268 4.11175 4.19815 4.24403 4.34957 4.44247 4.44509 4.46752 4.52514 4.58471 4.64505 4.81890 4.83221 4.87629 4.95402 5.04150 5.16519 5.22685 5.24325 5.27498 5.28275 5.40775 5.45976 5.51360 5.55712 5.70999 5.76751 6.14055 6.24196 6.56385 6.76733 7.18721 7.33043 8.86076 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049406 B = 0.003106 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.596186 B = 9011.870658 C = 9222.246125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.141 3.859 11 N -0.712 5.712 12 C 0.505 3.495 13 O -0.587 6.587 14 C 0.056 3.944 15 H 0.126 0.874 16 C -0.127 4.127 17 C -0.125 4.125 18 H 0.056 0.944 19 C -0.100 4.100 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.112 4.112 23 C 0.069 3.931 24 H 0.098 0.902 25 N -0.653 5.653 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.010 0.990 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.412 0.588 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -23.826 4.385 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.362 5.362 12 C 0.292 3.708 13 O -0.468 6.468 14 C -0.057 4.057 15 H 0.144 0.856 16 C -0.167 4.167 17 C -0.146 4.146 18 H 0.075 0.925 19 C -0.138 4.138 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.041 4.041 24 H 0.116 0.884 25 N -0.283 5.283 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.248 0.752 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.662 -23.875 3.707 24.170 hybrid contribution 0.405 1.626 0.828 1.869 sum -0.258 -22.249 4.534 22.708 Atomic orbital electron populations 1.70057 1.07494 1.27980 1.50972 1.25861 0.95812 1.03073 0.94379 0.85399 0.78918 0.78781 0.77964 1.19076 1.20150 1.20129 1.21490 0.93536 0.91995 1.51577 0.92461 1.19126 0.94169 0.91646 0.96441 1.21228 0.95087 0.82334 0.99670 1.46099 1.11165 1.05466 1.73487 1.21288 0.87972 0.86664 0.74862 1.90628 1.15903 1.88036 1.52228 1.23012 0.96637 0.87477 0.98558 0.85632 1.22520 1.02684 0.97820 0.93646 1.22476 0.99341 0.94495 0.98251 0.92501 1.21349 0.98375 0.94359 0.99682 1.21563 0.99471 0.97276 0.97380 1.21476 1.00953 0.97273 0.95138 1.21454 0.97509 0.95427 1.00574 1.22515 1.00084 0.91515 0.90029 0.88441 1.63434 1.07672 1.02910 1.54235 0.92488 0.97234 0.97170 0.93672 0.93706 0.75196 0.87517 0.92229 0.91585 0.90270 0.92918 0.90469 0.90967 0.90881 0.90964 0.92731 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -30.79 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C 0.14 6.13 5.61 86.38 0.48 6.61 16 11 N -0.71 -24.78 5.56 -463.06 -2.57 -27.35 16 12 C 0.51 17.12 6.90 87.66 0.61 17.73 16 13 O -0.59 -24.53 15.64 -3.03 -0.05 -24.58 16 14 C 0.06 1.38 3.80 44.34 0.17 1.55 16 15 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 16 C -0.13 -2.57 6.23 31.26 0.19 -2.38 16 17 C -0.13 -2.32 2.54 -10.41 -0.03 -2.34 16 18 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 19 C -0.10 -1.34 5.61 30.43 0.17 -1.17 16 20 C -0.12 -1.42 5.85 30.70 0.18 -1.24 16 21 C -0.11 -1.29 5.84 30.71 0.18 -1.11 16 22 C -0.11 -1.78 5.85 30.39 0.18 -1.61 16 23 C 0.07 1.28 2.66 45.31 0.12 1.40 16 24 H 0.10 1.65 7.99 -2.39 -0.02 1.63 16 25 N -0.65 -16.34 7.38 -462.62 -3.42 -19.75 16 26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.41 12.14 8.47 -92.71 -0.79 11.35 16 32 H 0.11 1.63 8.05 -2.39 -0.02 1.61 16 33 H 0.06 1.40 7.71 -2.39 -0.02 1.38 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.90 8.03 -2.39 -0.02 0.88 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 42 H 0.34 9.92 7.31 -89.69 -0.66 9.26 16 Total: -1.00 -65.79 332.58 -1.06 -66.85 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.44 Total: 23.85 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 3.10 Total: -10.88 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.70 Total: -101.01 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.79 -1.06 -66.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226984710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.567 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds