Wall clock time and date at job start Mon Mar 30 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47146 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47196 * 119.99727 * 3 2 1 7 7 C 1.37873 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00223 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00052 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99816 * 179.97438 * 11 10 9 14 14 H 1.08999 * 109.46029 * 40.03097 * 13 11 10 15 15 C 1.53027 * 109.45902 * 280.08301 * 13 11 10 16 16 C 1.53129 * 109.30013 * 180.86716 * 15 13 11 17 17 C 1.53157 * 109.11028 * 57.68658 * 16 15 13 18 18 H 1.08996 * 109.54075 * 181.96215 * 17 16 15 19 19 C 1.53022 * 109.31685 * 61.92228 * 17 16 15 20 20 C 1.52988 * 109.49355 * 180.49428 * 19 17 16 21 21 C 1.52997 * 109.47151 * 60.04421 * 20 19 17 22 22 C 1.52997 * 109.44408 * 299.96083 * 21 20 19 23 23 C 1.52971 * 109.49545 * 59.99315 * 22 21 20 24 24 H 1.08992 * 109.34135 * 180.12546 * 23 22 21 25 25 N 1.46838 * 109.56137 * 60.18687 * 23 22 21 26 26 H 0.96998 * 120.00260 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47481 * 59.99958 * 9 7 2 28 28 H 1.09003 * 109.46799 * 299.99115 * 9 7 2 29 29 H 0.97001 * 120.00351 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.50021 * 300.81464 * 15 13 11 31 31 H 1.08997 * 109.49824 * 60.91891 * 15 13 11 32 32 H 1.09006 * 109.52850 * 177.57673 * 16 15 13 33 33 H 1.08996 * 109.52955 * 297.72215 * 16 15 13 34 34 H 1.08996 * 109.46637 * 300.50205 * 19 17 16 35 35 H 1.09004 * 109.46736 * 60.49317 * 19 17 16 36 36 H 1.09006 * 109.46725 * 180.02562 * 20 19 17 37 37 H 1.09003 * 109.47350 * 300.04181 * 20 19 17 38 38 H 1.08997 * 109.47797 * 59.95370 * 21 20 19 39 39 H 1.09005 * 109.47260 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.46685 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47204 * 299.99149 * 22 21 20 42 42 H 1.00901 * 110.99937 * 53.96533 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7332 -6.0287 0.0005 14 1 3.5678 -5.7932 0.6608 15 6 3.2555 -6.2522 -1.4205 16 6 4.2336 -7.4304 -1.4208 17 6 3.5214 -8.6734 -0.8792 18 1 4.2214 -9.5082 -0.8436 19 6 2.3500 -9.0264 -1.7983 20 6 1.6281 -10.2606 -1.2541 21 6 1.1008 -9.9648 0.1513 22 6 2.2718 -9.6127 1.0709 23 6 2.9949 -8.3792 0.5272 24 1 3.8298 -8.1320 1.1828 25 7 2.0625 -7.2460 0.4748 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5572 -0.8897 28 1 0.6242 -2.5567 0.8904 29 1 3.1568 -3.4354 0.0002 30 1 2.4199 -6.4729 -2.0847 31 1 3.7676 -5.3540 -1.7653 32 1 4.5750 -7.6203 -2.4384 33 1 5.0888 -7.1941 -0.7876 34 1 1.6551 -8.1878 -1.8394 35 1 2.7248 -9.2371 -2.7999 36 1 0.7940 -10.5120 -1.9094 37 1 2.3232 -11.0992 -1.2124 38 1 0.4064 -9.1257 0.1098 39 1 0.5861 -10.8440 0.5389 40 1 1.8966 -9.4014 2.0722 41 1 2.9663 -10.4518 1.1124 42 1 1.6283 -7.0932 1.3727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227232505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:37 Heat of formation + Delta-G solvation = -65.390329 kcal Electronic energy + Delta-G solvation = -20983.854581 eV Core-core repulsion = 17962.034026 eV Total energy + Delta-G solvation = -3021.820555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31159 -38.39770 -35.05703 -34.15065 -33.05213 -32.29765 -30.39534 -29.11840 -27.33669 -24.80890 -23.38282 -22.32152 -22.13046 -20.83937 -19.52587 -18.29942 -17.21245 -16.20363 -15.71373 -15.52290 -15.02014 -14.67307 -14.32617 -14.29154 -14.01950 -13.60045 -13.38755 -12.84993 -12.69809 -12.42736 -12.31610 -12.06714 -11.94088 -11.59323 -11.43408 -11.14670 -10.98858 -10.88430 -10.81657 -10.72046 -10.34473 -10.30481 -10.08583 -9.87953 -9.40366 -8.86853 -8.71927 -8.22535 -7.84481 -6.15842 -4.22925 3.25309 3.30142 3.31582 3.39357 3.83545 4.30542 4.45745 4.59259 4.70071 4.79355 5.04080 5.06185 5.20034 5.23003 5.29189 5.31204 5.40117 5.47563 5.51875 5.55300 5.67038 5.75122 5.80080 5.85317 5.90146 5.97885 6.02037 6.15587 6.24754 6.31829 6.33108 6.45264 6.63893 7.07581 7.33995 7.46638 7.47918 7.53429 7.69004 7.98342 8.65847 8.80332 9.14760 9.43947 10.94315 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003892 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.053272 B = 7192.794701 C = 7460.345734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.714 5.714 11 C 0.499 3.501 12 O -0.538 6.538 13 C 0.075 3.925 14 H 0.051 0.949 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.078 4.078 18 H 0.068 0.932 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.110 4.110 23 C 0.094 3.906 24 H 0.033 0.967 25 N -0.656 5.656 26 H 0.266 0.734 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.056 -18.735 -0.709 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.363 5.363 11 C 0.283 3.717 12 O -0.415 6.415 13 C -0.038 4.038 14 H 0.069 0.931 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.097 4.097 18 H 0.087 0.913 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.016 4.016 24 H 0.051 0.949 25 N -0.290 5.290 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.221 0.779 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.755 -18.896 -1.321 20.468 hybrid contribution 1.485 1.338 0.845 2.170 sum 9.240 -17.558 -0.476 19.846 Atomic orbital electron populations 1.69964 1.06104 1.27401 1.48811 1.24947 0.94903 0.99414 0.94705 0.86482 0.79424 0.82364 0.78675 1.20058 1.21058 1.20098 1.21191 0.93198 0.90511 1.53319 0.92009 1.19075 0.88283 0.81924 0.97657 1.46481 1.10994 1.06129 1.72691 1.20314 0.89433 0.84023 0.77973 1.90664 1.16524 1.84674 1.49668 1.21419 0.94620 0.90010 0.97785 0.93146 1.21558 0.99471 0.98415 0.95150 1.21638 0.97592 0.94857 1.01176 1.21181 0.96839 0.97080 0.94613 0.91346 1.21551 0.97479 0.98825 0.96945 1.21459 0.99430 0.97488 0.96719 1.21431 0.97828 1.01328 0.94559 1.21541 0.97932 0.96562 0.98790 1.21436 0.93117 0.91187 0.95838 0.94874 1.59964 1.31774 1.02962 1.34265 0.92393 0.95591 0.95642 0.77911 0.90224 0.91110 0.91554 0.92237 0.89819 0.93045 0.92456 0.93032 0.90173 0.93058 0.92188 0.91886 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.70 5.43 -5.19 -0.03 6.68 16 10 N -0.71 -15.08 5.55 -61.47 -0.34 -15.43 16 11 C 0.50 10.00 6.99 -10.99 -0.08 9.92 16 12 O -0.54 -13.07 16.52 5.56 0.09 -12.97 16 13 C 0.08 1.11 2.83 -68.88 -0.19 0.91 16 14 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 15 C -0.11 -1.41 4.99 -26.65 -0.13 -1.54 16 16 C -0.11 -1.20 5.51 -26.58 -0.15 -1.34 16 17 C -0.08 -0.81 2.51 -90.51 -0.23 -1.03 16 18 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 19 C -0.11 -1.21 4.74 -26.73 -0.13 -1.34 16 20 C -0.11 -1.14 5.92 -26.74 -0.16 -1.29 16 21 C -0.11 -1.19 5.77 -26.73 -0.15 -1.35 16 22 C -0.11 -1.08 5.55 -26.75 -0.15 -1.23 16 23 C 0.09 1.03 2.61 -67.75 -0.18 0.85 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 N -0.66 -9.02 4.27 -101.02 -0.43 -9.45 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 30 H 0.08 1.17 6.54 -51.93 -0.34 0.83 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.03 7.61 -51.93 -0.40 0.63 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.35 4.94 8.64 -39.29 -0.34 4.60 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -30.95 325.04 -9.23 -40.18 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.18 Total: 6.59 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.99 Total: -4.20 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.04 Total: -50.34 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.95 -9.23 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227232505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.214 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds