Wall clock time and date at job start Mon Mar 30 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47146 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47196 * 119.99727 * 3 2 1 7 7 C 1.37873 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00223 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00052 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99816 * 179.97438 * 11 10 9 14 14 H 1.08999 * 109.46029 * 40.03097 * 13 11 10 15 15 C 1.53027 * 109.45902 * 280.08301 * 13 11 10 16 16 C 1.53129 * 109.30013 * 180.86716 * 15 13 11 17 17 C 1.53157 * 109.11028 * 57.68658 * 16 15 13 18 18 H 1.08996 * 109.54075 * 181.96215 * 17 16 15 19 19 C 1.53022 * 109.31685 * 61.92228 * 17 16 15 20 20 C 1.52988 * 109.49355 * 180.49428 * 19 17 16 21 21 C 1.52997 * 109.47151 * 60.04421 * 20 19 17 22 22 C 1.52997 * 109.44408 * 299.96083 * 21 20 19 23 23 C 1.52971 * 109.49545 * 59.99315 * 22 21 20 24 24 H 1.08992 * 109.34135 * 180.12546 * 23 22 21 25 25 N 1.46838 * 109.56137 * 60.18687 * 23 22 21 26 26 H 0.96998 * 120.00260 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47481 * 59.99958 * 9 7 2 28 28 H 1.09003 * 109.46799 * 299.99115 * 9 7 2 29 29 H 0.97001 * 120.00351 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.50021 * 300.81464 * 15 13 11 31 31 H 1.08997 * 109.49824 * 60.91891 * 15 13 11 32 32 H 1.09006 * 109.52850 * 177.57673 * 16 15 13 33 33 H 1.08996 * 109.52955 * 297.72215 * 16 15 13 34 34 H 1.08996 * 109.46637 * 300.50205 * 19 17 16 35 35 H 1.09004 * 109.46736 * 60.49317 * 19 17 16 36 36 H 1.09006 * 109.46725 * 180.02562 * 20 19 17 37 37 H 1.09003 * 109.47350 * 300.04181 * 20 19 17 38 38 H 1.08997 * 109.47797 * 59.95370 * 21 20 19 39 39 H 1.09005 * 109.47260 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.46685 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47204 * 299.99149 * 22 21 20 42 42 H 1.00901 * 110.99937 * 53.96533 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7332 -6.0287 0.0005 14 1 3.5678 -5.7932 0.6608 15 6 3.2555 -6.2522 -1.4205 16 6 4.2336 -7.4304 -1.4208 17 6 3.5214 -8.6734 -0.8792 18 1 4.2214 -9.5082 -0.8436 19 6 2.3500 -9.0264 -1.7983 20 6 1.6281 -10.2606 -1.2541 21 6 1.1008 -9.9648 0.1513 22 6 2.2718 -9.6127 1.0709 23 6 2.9949 -8.3792 0.5272 24 1 3.8298 -8.1320 1.1828 25 7 2.0625 -7.2460 0.4748 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5572 -0.8897 28 1 0.6242 -2.5567 0.8904 29 1 3.1568 -3.4354 0.0002 30 1 2.4199 -6.4729 -2.0847 31 1 3.7676 -5.3540 -1.7653 32 1 4.5750 -7.6203 -2.4384 33 1 5.0888 -7.1941 -0.7876 34 1 1.6551 -8.1878 -1.8394 35 1 2.7248 -9.2371 -2.7999 36 1 0.7940 -10.5120 -1.9094 37 1 2.3232 -11.0992 -1.2124 38 1 0.4064 -9.1257 0.1098 39 1 0.5861 -10.8440 0.5389 40 1 1.8966 -9.4014 2.0722 41 1 2.9663 -10.4518 1.1124 42 1 1.6283 -7.0932 1.3727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227232505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:37 Heat of formation + Delta-G solvation = -86.821923 kcal Electronic energy + Delta-G solvation = -20984.783925 eV Core-core repulsion = 17962.034026 eV Total energy + Delta-G solvation = -3022.749899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42854 -39.89781 -36.22999 -35.99845 -34.34344 -33.97750 -31.47230 -30.02322 -29.27495 -26.12669 -24.68496 -23.75998 -23.17059 -21.80035 -21.16730 -19.21874 -18.95969 -17.63804 -17.37024 -16.80415 -16.35141 -16.17512 -15.80448 -15.39990 -15.14540 -14.79958 -14.55160 -14.26577 -14.04658 -13.84183 -13.60382 -13.27872 -13.19472 -12.95046 -12.87588 -12.67641 -12.37925 -12.24176 -12.04559 -11.79004 -11.61133 -11.52146 -11.23690 -10.92746 -10.79876 -10.71335 -10.50641 -9.83217 -9.25324 -8.29640 -6.46842 1.42447 1.46709 1.54965 1.75429 2.27983 2.48680 3.04990 3.23615 3.72345 3.77272 3.88413 4.05494 4.07514 4.12453 4.33701 4.41947 4.42233 4.57567 4.65296 4.68135 4.77819 4.86927 4.95491 5.02969 5.05566 5.09542 5.12626 5.19133 5.22670 5.27190 5.41914 5.46974 5.47649 5.49759 5.54500 5.67457 5.75767 5.83833 6.11021 6.39429 6.63921 6.93466 7.22747 7.50101 8.82418 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003892 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.053272 B = 7192.794701 C = 7460.345734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.496 3.504 12 O -0.587 6.587 13 C 0.090 3.910 14 H 0.076 0.924 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.077 4.077 18 H 0.094 0.906 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.107 4.107 23 C 0.092 3.908 24 H 0.047 0.953 25 N -0.671 5.671 26 H 0.269 0.731 27 H -0.015 1.015 28 H -0.014 1.014 29 H 0.406 0.594 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -19.675 -0.602 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.467 6.467 13 C -0.023 4.023 14 H 0.093 0.907 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.096 4.096 18 H 0.113 0.887 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.017 4.017 24 H 0.065 0.935 25 N -0.304 5.304 26 H 0.078 0.922 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.242 0.758 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.320 -19.873 -1.218 22.903 hybrid contribution 0.301 1.559 0.801 1.779 sum 11.621 -18.314 -0.416 21.694 Atomic orbital electron populations 1.70137 1.08327 1.28652 1.49875 1.26079 0.95761 1.03941 0.93779 0.85201 0.77912 0.76531 0.79538 1.18588 1.21086 1.18610 1.21585 0.94284 0.90560 1.53072 0.89814 1.18506 0.88666 0.84381 0.93882 1.46219 1.11047 1.05536 1.72991 1.21386 0.89833 0.84730 0.75799 1.90637 1.19219 1.85378 1.51479 1.21313 0.93217 0.88084 0.99662 0.90672 1.21574 0.99483 1.00219 0.93194 1.21626 0.97037 0.93274 1.02591 1.21241 0.96776 0.97909 0.93649 0.88735 1.21505 0.97312 0.97933 0.97978 1.21452 0.99665 0.97686 0.96073 1.21395 0.97807 1.00451 0.95473 1.21545 0.97847 0.96743 0.98323 1.21593 0.92952 0.90299 0.96820 0.93545 1.59978 1.33065 1.03317 1.34054 0.92235 0.99745 0.99623 0.75828 0.92586 0.90661 0.90088 0.90457 0.93372 0.92091 0.92940 0.90915 0.93507 0.91985 0.92251 0.89520 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.56 -30.64 9.28 25.60 0.24 -30.40 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 15.06 5.43 85.63 0.46 15.52 16 10 N -0.71 -30.63 5.55 -466.79 -2.59 -33.22 16 11 C 0.50 20.56 6.99 87.65 0.61 21.17 16 12 O -0.59 -30.32 16.52 -3.02 -0.05 -30.37 16 13 C 0.09 2.60 2.83 44.18 0.12 2.73 16 14 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.11 -2.66 4.99 30.65 0.15 -2.51 16 16 C -0.11 -1.89 5.51 30.69 0.17 -1.72 16 17 C -0.08 -1.35 2.51 -10.72 -0.03 -1.37 16 18 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 19 C -0.11 -2.26 4.74 30.60 0.15 -2.11 16 20 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 21 C -0.11 -2.28 5.77 30.59 0.18 -2.11 16 22 C -0.11 -1.84 5.55 30.58 0.17 -1.67 16 23 C 0.09 1.80 2.61 44.93 0.12 1.92 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 N -0.67 -18.28 4.27 -473.51 -2.02 -20.30 16 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.41 14.56 8.32 -92.71 -0.77 13.79 16 30 H 0.06 1.68 6.54 -2.39 -0.02 1.66 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 39 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.34 9.87 8.64 -89.69 -0.77 9.10 16 Total: -1.00 -71.02 325.04 0.10 -70.92 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.54 Total: 26.78 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 2.99 Total: -1.74 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.33 Total: -110.07 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.02 0.10 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227232505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.898 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds