Wall clock time and date at job start Mon Mar 30 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48501 * 109.46944 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47095 * 120.00062 * 3 2 1 6 6 H 1.48500 * 109.47451 * 240.00148 * 3 2 1 7 7 C 1.37883 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47102 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99830 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99691 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99949 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.35729 * 324.13907 * 15 13 12 17 17 C 1.54578 * 110.40353 * 201.81265 * 15 13 12 18 18 H 1.09004 * 110.40129 * 0.02562 * 17 15 13 19 19 N 1.46900 * 110.40324 * 122.29896 * 17 15 13 20 20 C 1.55925 * 104.64722 * 241.21089 * 17 15 13 21 21 H 1.08996 * 115.92088 * 199.96788 * 20 17 15 22 22 C 1.55929 * 104.49780 * 71.08233 * 20 17 15 23 23 C 1.56532 * 103.72322 * 289.18479 * 22 20 17 24 24 C 1.55924 * 104.82376 * 0.40606 * 23 22 20 25 25 H 1.09003 * 116.52570 * 199.32602 * 24 23 22 26 26 C 1.56942 * 100.65340 * 325.95017 * 24 23 22 27 27 H 0.96992 * 119.99770 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46748 * 300.00145 * 9 7 2 29 29 H 1.08996 * 109.47009 * 59.99650 * 9 7 2 30 30 H 1.09001 * 109.46798 * 299.99472 * 10 9 7 31 31 H 1.08999 * 109.47403 * 59.99340 * 10 9 7 32 32 H 1.08998 * 109.47041 * 300.00252 * 11 10 9 33 33 H 1.09004 * 109.46811 * 59.99772 * 11 10 9 34 34 H 0.97002 * 120.00486 * 0.02562 * 12 11 10 35 35 H 1.00895 * 111.00326 * 298.54687 * 19 17 15 36 36 H 1.00895 * 111.00115 * 62.50470 * 19 17 15 37 37 H 1.08999 * 110.40243 * 48.51974 * 22 20 17 38 38 H 1.09003 * 110.39897 * 170.93302 * 22 20 17 39 39 H 1.08994 * 110.54347 * 241.43849 * 23 22 20 40 40 H 1.09000 * 110.17634 * 119.18847 * 23 22 20 41 41 H 1.09009 * 112.02533 * 296.82994 * 26 24 23 42 42 H 1.09001 * 112.09592 * 170.33373 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 7 2.4321 -6.1006 -0.0024 13 6 1.9828 -7.3714 -0.0024 14 8 0.7903 -7.5929 -0.0025 15 6 2.9620 -8.5168 -0.0022 16 1 3.8380 -8.2669 -0.6007 17 6 2.2899 -9.8005 -0.5405 18 1 1.2512 -9.6030 -0.8058 19 7 3.0251 -10.3143 -1.7039 20 6 2.3661 -10.8119 0.6438 21 1 2.2599 -11.8640 0.3795 22 6 1.3469 -10.2656 1.6899 23 6 2.0347 -8.9703 2.2371 24 6 3.3811 -8.8735 1.4568 25 1 4.1550 -8.2449 1.8973 26 6 3.7322 -10.3945 1.2941 27 1 -0.4849 -0.8400 -0.0004 28 1 0.6240 -2.5575 0.8881 29 1 0.6247 -2.5563 -0.8919 30 1 2.8724 -3.6041 -0.8910 31 1 2.8712 -3.6048 0.8890 32 1 0.8531 -5.0450 0.8877 33 1 0.8538 -5.0447 -0.8923 34 1 3.3858 -5.9235 -0.0019 35 1 3.0256 -9.6426 -2.4568 36 1 3.9665 -10.5743 -1.4507 37 1 0.3956 -10.0362 1.2096 38 1 1.2034 -10.9878 2.4936 39 1 2.2213 -9.0593 3.3073 40 1 1.4129 -8.0990 2.0317 41 1 3.8930 -10.8820 2.2557 42 1 4.5720 -10.5513 0.6172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227276258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:50 Heat of formation + Delta-G solvation = -60.306079 kcal Electronic energy + Delta-G solvation = -20508.673196 eV Core-core repulsion = 17487.073111 eV Total energy + Delta-G solvation = -3021.600085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31876 -38.54584 -35.53521 -33.74910 -33.62313 -31.43909 -29.98450 -28.38115 -27.62779 -26.17660 -23.25499 -22.06564 -20.99734 -20.66062 -20.11320 -18.81643 -17.21373 -16.90428 -16.56139 -16.15858 -15.55854 -15.24963 -14.83973 -14.18733 -13.88744 -13.75370 -13.26473 -13.02986 -12.92675 -12.54375 -11.97763 -11.85113 -11.66104 -11.56323 -11.33360 -11.21797 -11.07998 -10.92800 -10.82156 -10.71112 -10.34737 -10.20787 -10.04922 -10.03136 -9.64448 -8.96387 -8.85171 -8.59685 -8.36492 -6.39684 -4.09685 2.66145 3.28804 3.41336 3.43132 3.62173 4.09181 4.20128 4.22486 4.45502 4.51884 4.77275 4.85978 4.99492 5.05449 5.07820 5.11305 5.30130 5.37453 5.39820 5.50748 5.56620 5.62649 5.63630 5.77511 5.88564 5.90248 5.99831 6.03788 6.06783 6.23649 6.36381 6.42620 6.68309 6.81054 6.87157 7.16976 7.31980 7.44482 7.61771 8.14876 8.31188 8.41478 8.84069 9.63026 11.01054 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041270 B = 0.003210 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.303174 B = 8720.972883 C = 8761.990074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.049 0.951 9 C 0.011 3.989 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.519 3.481 14 O -0.539 6.539 15 C -0.149 4.149 16 H 0.087 0.913 17 C 0.101 3.899 18 H 0.104 0.896 19 N -0.839 5.839 20 C -0.093 4.093 21 H 0.104 0.896 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.089 4.089 25 H 0.102 0.898 26 C -0.124 4.124 27 H 0.269 0.731 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.342 0.658 36 H 0.337 0.663 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -21.773 1.796 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.304 3.696 14 O -0.417 6.417 15 C -0.173 4.173 16 H 0.105 0.895 17 C -0.011 4.011 18 H 0.122 0.878 19 N -0.367 5.367 20 C -0.111 4.111 21 H 0.122 0.878 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.108 4.108 25 H 0.120 0.880 26 C -0.162 4.162 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.231 0.769 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.835 -20.842 1.750 22.335 hybrid contribution 1.425 -0.565 0.142 1.539 sum 9.260 -21.406 1.892 23.400 Atomic orbital electron populations 1.70779 1.06894 1.30697 1.46352 1.25880 0.96559 1.02799 0.93730 0.83534 0.74886 0.75320 0.76480 1.20710 1.21445 1.21440 1.22014 0.94224 0.91939 1.56119 0.93314 1.19156 0.94494 0.92688 0.96346 1.21744 0.99462 0.92886 1.01048 1.21631 0.91964 0.85317 1.01815 1.46255 1.10649 1.05994 1.74705 1.20349 0.89608 0.83808 0.75786 1.90677 1.16775 1.84572 1.49681 1.23383 0.98288 0.95981 0.99606 0.89520 1.22666 0.99025 0.89764 0.89663 0.87784 1.58911 1.20990 1.47310 1.09529 1.23583 0.95002 0.98432 0.94120 0.87818 1.22871 0.98587 0.96217 0.97702 1.23083 0.95413 0.99308 0.98990 1.23473 0.97525 0.96797 0.92957 0.87964 1.23608 0.97075 0.94765 1.00738 0.92021 0.97203 0.97200 0.92616 0.92596 0.91911 0.91899 0.76933 0.84529 0.85063 0.90671 0.91900 0.91830 0.90587 0.90698 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 13.65 55.43 0.76 -27.35 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.60 -17.14 9.11 -34.43 -0.31 -17.46 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 9 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 10 C -0.11 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 2.02 5.67 -4.05 -0.02 2.00 16 12 N -0.73 -10.13 5.56 -60.30 -0.33 -10.47 16 13 C 0.52 7.26 5.57 -10.98 -0.06 7.20 16 14 O -0.54 -9.47 14.24 5.56 0.08 -9.39 16 15 C -0.15 -1.51 2.87 -89.38 -0.26 -1.76 16 16 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 17 C 0.10 1.04 2.97 -65.32 -0.19 0.85 16 18 H 0.10 1.40 6.40 -51.93 -0.33 1.07 16 19 N -0.84 -7.27 9.25 -2.64 -0.02 -7.30 16 20 C -0.09 -0.83 4.78 -85.35 -0.41 -1.24 16 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.12 -1.18 6.33 -23.26 -0.15 -1.33 16 23 C -0.13 -1.41 5.90 -23.27 -0.14 -1.55 16 24 C -0.09 -0.80 4.92 -85.36 -0.42 -1.22 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 26 C -0.12 -0.94 6.34 -22.46 -0.14 -1.08 16 27 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 28 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 29 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.40 4.53 8.47 -40.82 -0.35 4.19 16 35 H 0.34 2.81 9.06 -39.29 -0.36 2.46 16 36 H 0.34 2.34 8.07 -39.29 -0.32 2.02 16 37 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.05 5.53 -51.93 -0.29 0.77 16 41 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.44 7.34 -51.93 -0.38 0.06 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -32.15 328.29 -9.09 -41.24 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.97 Total: 5.74 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.46 Total: -17.50 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.40 Total: -45.11 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.15 -9.09 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227276258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds