Wall clock time and date at job start Mon Mar 30 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48501 * 109.46944 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47095 * 120.00062 * 3 2 1 6 6 H 1.48500 * 109.47451 * 240.00148 * 3 2 1 7 7 C 1.37883 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47102 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99830 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99691 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99949 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.35729 * 324.13907 * 15 13 12 17 17 C 1.54578 * 110.40353 * 201.81265 * 15 13 12 18 18 H 1.09004 * 110.40129 * 0.02562 * 17 15 13 19 19 N 1.46900 * 110.40324 * 122.29896 * 17 15 13 20 20 C 1.55925 * 104.64722 * 241.21089 * 17 15 13 21 21 H 1.08996 * 115.92088 * 199.96788 * 20 17 15 22 22 C 1.55929 * 104.49780 * 71.08233 * 20 17 15 23 23 C 1.56532 * 103.72322 * 289.18479 * 22 20 17 24 24 C 1.55924 * 104.82376 * 0.40606 * 23 22 20 25 25 H 1.09003 * 116.52570 * 199.32602 * 24 23 22 26 26 C 1.56942 * 100.65340 * 325.95017 * 24 23 22 27 27 H 0.96992 * 119.99770 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46748 * 300.00145 * 9 7 2 29 29 H 1.08996 * 109.47009 * 59.99650 * 9 7 2 30 30 H 1.09001 * 109.46798 * 299.99472 * 10 9 7 31 31 H 1.08999 * 109.47403 * 59.99340 * 10 9 7 32 32 H 1.08998 * 109.47041 * 300.00252 * 11 10 9 33 33 H 1.09004 * 109.46811 * 59.99772 * 11 10 9 34 34 H 0.97002 * 120.00486 * 0.02562 * 12 11 10 35 35 H 1.00895 * 111.00326 * 298.54687 * 19 17 15 36 36 H 1.00895 * 111.00115 * 62.50470 * 19 17 15 37 37 H 1.08999 * 110.40243 * 48.51974 * 22 20 17 38 38 H 1.09003 * 110.39897 * 170.93302 * 22 20 17 39 39 H 1.08994 * 110.54347 * 241.43849 * 23 22 20 40 40 H 1.09000 * 110.17634 * 119.18847 * 23 22 20 41 41 H 1.09009 * 112.02533 * 296.82994 * 26 24 23 42 42 H 1.09001 * 112.09592 * 170.33373 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 7 2.4321 -6.1006 -0.0024 13 6 1.9828 -7.3714 -0.0024 14 8 0.7903 -7.5929 -0.0025 15 6 2.9620 -8.5168 -0.0022 16 1 3.8380 -8.2669 -0.6007 17 6 2.2899 -9.8005 -0.5405 18 1 1.2512 -9.6030 -0.8058 19 7 3.0251 -10.3143 -1.7039 20 6 2.3661 -10.8119 0.6438 21 1 2.2599 -11.8640 0.3795 22 6 1.3469 -10.2656 1.6899 23 6 2.0347 -8.9703 2.2371 24 6 3.3811 -8.8735 1.4568 25 1 4.1550 -8.2449 1.8973 26 6 3.7322 -10.3945 1.2941 27 1 -0.4849 -0.8400 -0.0004 28 1 0.6240 -2.5575 0.8881 29 1 0.6247 -2.5563 -0.8919 30 1 2.8724 -3.6041 -0.8910 31 1 2.8712 -3.6048 0.8890 32 1 0.8531 -5.0450 0.8877 33 1 0.8538 -5.0447 -0.8923 34 1 3.3858 -5.9235 -0.0019 35 1 3.0256 -9.6426 -2.4568 36 1 3.9665 -10.5743 -1.4507 37 1 0.3956 -10.0362 1.2096 38 1 1.2034 -10.9878 2.4936 39 1 2.2213 -9.0593 3.3073 40 1 1.4129 -8.0990 2.0317 41 1 3.8930 -10.8820 2.2557 42 1 4.5720 -10.5513 0.6172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227276258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:50 Heat of formation + Delta-G solvation = -83.321014 kcal Electronic energy + Delta-G solvation = -20509.671199 eV Core-core repulsion = 17487.073111 eV Total energy + Delta-G solvation = -3022.598088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.21801 -39.64603 -37.13274 -35.48214 -34.49673 -33.11131 -31.02372 -29.14262 -28.59519 -27.77179 -25.08926 -23.14084 -22.58068 -21.78082 -20.88523 -19.73253 -18.96877 -18.21845 -17.52029 -17.09734 -16.65399 -16.46684 -16.03787 -15.64534 -15.34621 -15.09115 -14.82808 -14.29725 -13.75648 -13.71813 -13.60386 -13.26011 -12.80165 -12.64910 -12.60015 -12.29941 -12.12891 -12.04233 -11.96063 -11.88324 -11.85336 -11.82948 -11.48836 -11.12669 -10.91397 -10.68186 -10.57118 -10.17892 -9.66273 -8.71682 -6.43189 1.52470 1.55328 1.61250 1.80279 2.12588 2.56765 3.13730 3.31536 3.44227 3.46164 3.75206 3.88351 3.98495 4.03254 4.09439 4.19435 4.28073 4.32094 4.35724 4.36953 4.50872 4.62964 4.72509 4.79814 4.87636 4.90956 4.97906 5.08962 5.12764 5.16946 5.20547 5.27441 5.30119 5.39823 5.42124 5.44513 5.94097 6.14969 6.17270 6.50749 6.53485 6.59483 7.20213 7.40289 8.69090 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041270 B = 0.003210 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.303174 B = 8720.972883 C = 8761.990074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.121 2.879 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.619 4.619 8 H 0.058 0.942 9 C 0.007 3.993 10 C -0.094 4.094 11 C 0.131 3.869 12 N -0.716 5.716 13 C 0.516 3.484 14 O -0.581 6.581 15 C -0.140 4.140 16 H 0.114 0.886 17 C 0.103 3.897 18 H 0.065 0.935 19 N -0.838 5.838 20 C -0.089 4.089 21 H 0.112 0.888 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.084 4.084 25 H 0.122 0.878 26 C -0.109 4.109 27 H 0.254 0.746 28 H -0.012 1.012 29 H -0.012 1.012 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.414 0.586 35 H 0.344 0.656 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -22.789 2.015 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.941 3.059 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.657 4.657 8 H 0.077 0.923 9 C -0.030 4.030 10 C -0.132 4.132 11 C 0.007 3.993 12 N -0.368 5.368 13 C 0.304 3.696 14 O -0.461 6.461 15 C -0.163 4.163 16 H 0.132 0.868 17 C -0.010 4.010 18 H 0.083 0.917 19 N -0.368 5.368 20 C -0.107 4.107 21 H 0.130 0.870 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.103 4.103 25 H 0.140 0.860 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.250 0.750 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.500 -21.898 1.966 24.812 hybrid contribution 0.217 -0.302 0.070 0.378 sum 11.717 -22.200 2.036 25.185 Atomic orbital electron populations 1.70921 1.08160 1.29839 1.48783 1.27556 0.96571 1.07206 0.92657 0.82904 0.74074 0.70725 0.78208 1.21180 1.19115 1.19112 1.22485 0.94967 0.93067 1.55141 0.92331 1.19121 0.95142 0.94536 0.94232 1.21467 0.98134 0.91494 1.02129 1.21168 0.92073 0.85824 1.00286 1.46053 1.10898 1.05167 1.74691 1.21115 0.89807 0.84382 0.74330 1.90669 1.19030 1.85120 1.51266 1.23425 0.97823 0.93831 1.01245 0.86759 1.22488 0.97286 0.90469 0.90739 0.91715 1.58842 1.21859 1.47234 1.08876 1.23585 0.95742 0.98392 0.93027 0.86968 1.22851 0.97703 0.96546 0.98485 1.23084 0.96154 0.97927 1.00108 1.23586 0.96758 0.98544 0.91376 0.86044 1.23574 0.96399 0.92911 1.01778 0.93663 0.99406 0.99392 0.91389 0.91394 0.93620 0.93551 0.74974 0.84230 0.83440 0.93758 0.90409 0.90706 0.94327 0.89293 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 2 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 3 Si 1.12 49.78 29.90 68.60 2.05 51.83 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.62 -35.10 9.11 25.60 0.23 -34.86 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.01 0.38 4.28 29.85 0.13 0.51 16 10 C -0.09 -3.68 5.27 30.59 0.16 -3.52 16 11 C 0.13 4.67 5.67 86.38 0.49 5.16 16 12 N -0.72 -19.47 5.56 -463.06 -2.57 -22.05 16 13 C 0.52 14.42 5.57 87.65 0.49 14.91 16 14 O -0.58 -21.51 14.24 -3.04 -0.04 -21.55 16 15 C -0.14 -2.56 2.87 -9.99 -0.03 -2.59 16 16 H 0.11 1.50 7.96 -2.39 -0.02 1.48 16 17 C 0.10 2.01 2.97 46.47 0.14 2.15 16 18 H 0.06 1.82 6.40 -2.38 -0.02 1.80 16 19 N -0.84 -12.72 9.25 -162.28 -1.50 -14.22 16 20 C -0.09 -1.43 4.78 -7.38 -0.04 -1.46 16 21 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 22 C -0.12 -2.38 6.33 32.84 0.21 -2.17 16 23 C -0.14 -2.84 5.90 32.84 0.19 -2.64 16 24 C -0.08 -1.28 4.92 -7.39 -0.04 -1.32 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 26 C -0.11 -1.22 6.34 33.36 0.21 -1.01 16 27 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 28 H -0.01 -0.69 8.01 -2.38 -0.02 -0.71 16 29 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.41 8.47 8.47 -92.71 -0.79 7.68 16 35 H 0.34 5.03 9.06 -89.70 -0.81 4.21 16 36 H 0.35 3.62 8.07 -89.70 -0.72 2.89 16 37 H 0.04 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.11 5.53 -2.39 -0.01 1.09 16 41 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.09 0.69 7.34 -2.39 -0.02 0.67 16 Total: -1.00 -72.64 328.29 -0.35 -72.99 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.19 Total: 20.95 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 2.61 Total: -28.88 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -3.78 Total: -95.33 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.04 Total: -21.55 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -72.64 -0.35 -72.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227276258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.335 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds