Wall clock time and date at job start Mon Mar 30 2020 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48500 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46694 * 300.00038 * 3 2 1 6 6 H 1.48501 * 109.46971 * 59.99813 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46980 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00572 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99551 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00206 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.79858 * 59.49041 * 14 12 11 16 16 C 1.53206 * 109.57057 * 298.99444 * 14 12 11 17 17 C 1.52834 * 108.13019 * 176.38318 * 16 14 12 18 18 C 1.50861 * 111.62847 * 58.95963 * 17 16 14 19 19 H 1.09000 * 108.91679 * 185.66762 * 18 17 16 20 20 C 1.54236 * 112.63572 * 63.95330 * 18 17 16 21 21 C 1.54691 * 102.20668 * 200.02329 * 20 18 17 22 22 N 1.47607 * 107.20959 * 21.63525 * 21 20 18 23 23 C 1.48970 * 108.13956 * 3.37768 * 22 21 20 24 24 H 1.09003 * 112.65761 * 212.15169 * 23 22 21 25 25 C 1.52606 * 109.63499 * 180.02562 * 14 12 11 26 26 H 0.96997 * 120.00218 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47027 * 60.00205 * 9 7 2 28 28 H 1.08992 * 109.47603 * 299.99969 * 9 7 2 29 29 H 1.08997 * 109.47326 * 59.99725 * 10 9 7 30 30 H 1.09005 * 109.47226 * 299.99850 * 10 9 7 31 31 H 0.97009 * 119.99764 * 359.97438 * 11 10 9 32 32 H 1.09001 * 109.74077 * 56.72405 * 16 14 12 33 33 H 1.09003 * 109.78271 * 296.05855 * 16 14 12 34 34 H 1.09004 * 109.04841 * 298.41481 * 17 16 14 35 35 H 1.08997 * 109.05396 * 179.52011 * 17 16 14 36 36 H 1.08996 * 110.85798 * 318.20198 * 20 18 17 37 37 H 1.09001 * 110.85551 * 81.84531 * 20 18 17 38 38 H 1.09002 * 109.89187 * 141.03583 * 21 20 18 39 39 H 1.09003 * 109.89172 * 262.23647 * 21 20 18 40 40 H 1.00907 * 111.00247 * 241.39636 * 22 21 20 41 41 H 1.09002 * 109.18220 * 61.62711 * 25 14 12 42 42 H 1.08997 * 109.18104 * 302.33767 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4333 -7.4031 -0.0008 15 1 0.7975 -7.4623 -0.8841 16 6 0.5713 -7.4981 1.2622 17 6 -0.2449 -8.7879 1.1850 18 6 0.6433 -10.0024 1.0762 19 1 0.0201 -10.8834 0.9228 20 6 1.5257 -10.2062 2.3247 21 6 2.6510 -11.1198 1.7843 22 7 2.6866 -10.9484 0.3186 23 6 1.6869 -9.9077 -0.0510 24 1 1.2395 -10.0839 -1.0293 25 6 2.4217 -8.5659 -0.0009 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8898 28 1 0.6241 -2.5568 0.8902 29 1 2.8721 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 0.5429 -4.9309 0.0000 32 1 -0.0996 -6.6407 1.3153 33 1 1.2109 -7.5198 2.1446 34 1 -0.8968 -8.7447 0.3124 35 1 -0.8584 -8.8749 2.0817 36 1 1.9308 -9.2562 2.6730 37 1 0.9677 -10.7052 3.1170 38 1 3.6076 -10.8246 2.2156 39 1 2.4354 -12.1594 2.0310 40 1 2.4926 -11.8196 -0.1522 41 1 3.0265 -8.5219 0.9049 42 1 3.0732 -8.4820 -0.8707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310402341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:27 Heat of formation + Delta-G solvation = -64.229716 kcal Electronic energy + Delta-G solvation = -20462.046011 eV Core-core repulsion = 17440.275784 eV Total energy + Delta-G solvation = -3021.770227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62372 -38.84489 -35.10341 -34.80994 -32.80220 -31.91390 -29.94958 -28.82370 -28.42690 -25.05842 -23.21078 -22.77756 -21.12510 -20.92939 -19.86369 -18.82536 -16.91447 -16.82070 -16.36776 -15.70092 -15.09966 -14.93084 -14.49779 -14.18863 -14.00007 -13.79896 -13.45032 -13.06505 -12.75847 -12.62770 -12.34643 -12.27534 -11.87159 -11.60523 -11.42444 -11.18043 -11.03844 -10.91164 -10.75689 -10.61260 -10.45240 -10.31505 -10.24341 -9.72462 -9.39130 -9.09249 -8.69392 -8.51536 -8.31840 -6.09102 -4.11674 3.07869 3.28650 3.36144 3.41353 3.66764 3.94260 4.32038 4.41382 4.49432 4.59577 4.89661 4.92301 4.94708 5.06922 5.12546 5.27059 5.28054 5.33615 5.35452 5.51213 5.57658 5.60694 5.69107 5.79005 5.85033 5.97512 6.01277 6.10990 6.29346 6.37321 6.38116 6.45067 6.63653 6.76714 6.98293 7.16347 7.53227 7.62930 7.89652 8.08065 8.29346 8.73391 8.94818 9.53240 11.02545 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.003295 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.345604 B = 8494.965660 C = 8787.314668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.509 3.491 13 O -0.549 6.549 14 C -0.108 4.108 15 H 0.094 0.906 16 C -0.111 4.111 17 C -0.104 4.104 18 C -0.115 4.115 19 H 0.067 0.933 20 C -0.139 4.139 21 C 0.046 3.954 22 N -0.680 5.680 23 C 0.082 3.918 24 H 0.085 0.915 25 C -0.081 4.081 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.334 0.666 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -22.482 2.407 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.373 5.373 12 C 0.294 3.706 13 O -0.428 6.428 14 C -0.130 4.130 15 H 0.112 0.888 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.135 4.135 19 H 0.086 0.914 20 C -0.178 4.178 21 C -0.083 4.083 22 N -0.307 5.307 23 C -0.028 4.028 24 H 0.103 0.897 25 C -0.119 4.119 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.085 -21.930 2.394 22.087 hybrid contribution -0.997 0.476 0.140 1.114 sum -2.082 -21.454 2.534 21.703 Atomic orbital electron populations 1.69964 1.06082 1.26737 1.50572 1.24999 0.94893 0.99415 0.95016 0.86464 0.80202 0.83351 0.77606 1.19566 1.20933 1.20941 1.21105 0.93297 0.90419 1.51090 0.92211 1.19322 0.94205 0.91185 0.97776 1.21700 0.96029 0.81702 1.00688 1.46345 1.10428 1.06582 1.73899 1.20522 0.88149 0.85472 0.76434 1.90671 1.14100 1.87820 1.50170 1.21307 0.98127 0.93424 1.00120 0.88797 1.21588 0.98319 0.97919 0.97097 1.20917 0.97520 0.93427 1.02328 1.21955 0.96758 0.98664 0.96109 0.91443 1.22801 0.96689 1.00867 0.97424 1.22694 0.99057 0.98294 0.88284 1.62288 1.50888 1.11394 1.06127 1.22530 0.89947 0.92991 0.97322 0.89732 1.21165 0.96575 0.90026 1.04176 0.92923 0.95990 0.95979 0.92687 0.92677 0.77017 0.90898 0.91135 0.91585 0.91617 0.90344 0.91217 0.90737 0.93067 0.85070 0.90887 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.72 -12.68 5.44 -60.29 -0.33 -13.01 16 12 C 0.51 8.69 7.15 -10.99 -0.08 8.61 16 13 O -0.55 -11.62 15.97 5.56 0.09 -11.53 16 14 C -0.11 -1.32 2.50 -91.87 -0.23 -1.55 16 15 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.11 -1.16 5.00 -26.71 -0.13 -1.29 16 17 C -0.10 -0.85 5.38 -27.89 -0.15 -1.00 16 18 C -0.11 -0.94 2.89 -90.57 -0.26 -1.20 16 19 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.14 -1.17 5.84 -25.19 -0.15 -1.32 16 21 C 0.05 0.39 7.30 -2.55 -0.02 0.38 16 22 N -0.68 -6.37 6.91 -103.21 -0.71 -7.08 16 23 C 0.08 0.77 3.93 -66.05 -0.26 0.51 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 C -0.08 -1.00 3.66 -26.90 -0.10 -1.10 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.40 6.00 7.94 -40.82 -0.32 5.67 16 32 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 33 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.77 6.01 -51.93 -0.31 0.45 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.33 2.50 8.92 -39.29 -0.35 2.15 16 41 H 0.07 1.04 7.01 -51.93 -0.36 0.68 16 42 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -31.67 327.34 -9.38 -41.05 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.12 Total: 3.14 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.95 Total: -8.52 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.31 Total: -45.53 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.67 -9.38 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310402341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.179 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds