Wall clock time and date at job start Mon Mar 30 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48500 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46694 * 300.00038 * 3 2 1 6 6 H 1.48501 * 109.46971 * 59.99813 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46980 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00572 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99551 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00206 * 179.97438 * 12 11 10 15 15 H 1.08996 * 109.79858 * 59.49041 * 14 12 11 16 16 C 1.53206 * 109.57057 * 298.99444 * 14 12 11 17 17 C 1.52834 * 108.13019 * 176.38318 * 16 14 12 18 18 C 1.50861 * 111.62847 * 58.95963 * 17 16 14 19 19 H 1.09000 * 108.91679 * 185.66762 * 18 17 16 20 20 C 1.54236 * 112.63572 * 63.95330 * 18 17 16 21 21 C 1.54691 * 102.20668 * 200.02329 * 20 18 17 22 22 N 1.47607 * 107.20959 * 21.63525 * 21 20 18 23 23 C 1.48970 * 108.13956 * 3.37768 * 22 21 20 24 24 H 1.09003 * 112.65761 * 212.15169 * 23 22 21 25 25 C 1.52606 * 109.63499 * 180.02562 * 14 12 11 26 26 H 0.96997 * 120.00218 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47027 * 60.00205 * 9 7 2 28 28 H 1.08992 * 109.47603 * 299.99969 * 9 7 2 29 29 H 1.08997 * 109.47326 * 59.99725 * 10 9 7 30 30 H 1.09005 * 109.47226 * 299.99850 * 10 9 7 31 31 H 0.97009 * 119.99764 * 359.97438 * 11 10 9 32 32 H 1.09001 * 109.74077 * 56.72405 * 16 14 12 33 33 H 1.09003 * 109.78271 * 296.05855 * 16 14 12 34 34 H 1.09004 * 109.04841 * 298.41481 * 17 16 14 35 35 H 1.08997 * 109.05396 * 179.52011 * 17 16 14 36 36 H 1.08996 * 110.85798 * 318.20198 * 20 18 17 37 37 H 1.09001 * 110.85551 * 81.84531 * 20 18 17 38 38 H 1.09002 * 109.89187 * 141.03583 * 21 20 18 39 39 H 1.09003 * 109.89172 * 262.23647 * 21 20 18 40 40 H 1.00907 * 111.00247 * 241.39636 * 22 21 20 41 41 H 1.09002 * 109.18220 * 61.62711 * 25 14 12 42 42 H 1.08997 * 109.18104 * 302.33767 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4333 -7.4031 -0.0008 15 1 0.7975 -7.4623 -0.8841 16 6 0.5713 -7.4981 1.2622 17 6 -0.2449 -8.7879 1.1850 18 6 0.6433 -10.0024 1.0762 19 1 0.0201 -10.8834 0.9228 20 6 1.5257 -10.2062 2.3247 21 6 2.6510 -11.1198 1.7843 22 7 2.6866 -10.9484 0.3186 23 6 1.6869 -9.9077 -0.0510 24 1 1.2395 -10.0839 -1.0293 25 6 2.4217 -8.5659 -0.0009 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8898 28 1 0.6241 -2.5568 0.8902 29 1 2.8721 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 0.5429 -4.9309 0.0000 32 1 -0.0996 -6.6407 1.3153 33 1 1.2109 -7.5198 2.1446 34 1 -0.8968 -8.7447 0.3124 35 1 -0.8584 -8.8749 2.0817 36 1 1.9308 -9.2562 2.6730 37 1 0.9677 -10.7052 3.1170 38 1 3.6076 -10.8246 2.2156 39 1 2.4354 -12.1594 2.0310 40 1 2.4926 -11.8196 -0.1522 41 1 3.0265 -8.5219 0.9049 42 1 3.0732 -8.4820 -0.8707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310402341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:26 Heat of formation + Delta-G solvation = -86.512060 kcal Electronic energy + Delta-G solvation = -20463.012246 eV Core-core repulsion = 17440.275784 eV Total energy + Delta-G solvation = -3022.736462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58999 -40.08544 -36.62754 -35.95734 -34.78969 -32.76831 -31.62238 -29.86645 -29.18514 -26.90003 -24.49192 -23.55397 -22.77936 -21.84677 -21.20978 -19.62463 -18.58428 -17.98676 -17.62945 -16.83675 -16.53743 -16.47988 -16.14213 -15.25867 -15.15696 -14.79661 -14.49574 -14.34456 -14.13892 -13.78279 -13.59059 -13.23972 -13.15741 -12.95932 -12.66090 -12.52274 -12.41443 -12.30070 -12.20962 -11.73682 -11.65417 -11.51490 -11.43247 -11.22100 -11.06753 -10.61902 -10.61255 -10.00139 -9.39306 -8.25161 -6.35523 1.40102 1.41158 1.54333 1.68140 2.26674 2.45574 3.09443 3.19126 3.60555 3.65381 3.88771 3.94485 4.08038 4.10025 4.33678 4.38954 4.41933 4.47384 4.51933 4.56622 4.57529 4.65100 4.83762 4.86211 4.93476 4.95989 5.06194 5.11129 5.20667 5.25646 5.30244 5.36609 5.43180 5.49136 5.54582 5.57446 5.78264 5.92046 6.15825 6.57541 6.65866 6.77642 7.31884 7.33855 8.86800 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.003295 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.345604 B = 8494.965660 C = 8787.314668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.506 3.494 13 O -0.594 6.594 14 C -0.095 4.095 15 H 0.121 0.879 16 C -0.109 4.109 17 C -0.099 4.099 18 C -0.109 4.109 19 H 0.089 0.911 20 C -0.140 4.140 21 C 0.045 3.955 22 N -0.696 5.696 23 C 0.086 3.914 24 H 0.102 0.898 25 C -0.075 4.075 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.410 0.590 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.347 0.653 41 H 0.046 0.954 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -23.622 2.333 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.367 5.367 12 C 0.294 3.706 13 O -0.475 6.475 14 C -0.117 4.117 15 H 0.139 0.861 16 C -0.147 4.147 17 C -0.137 4.137 18 C -0.129 4.129 19 H 0.107 0.893 20 C -0.178 4.178 21 C -0.084 4.084 22 N -0.325 5.325 23 C -0.023 4.023 24 H 0.120 0.880 25 C -0.114 4.114 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.164 0.836 41 H 0.064 0.936 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.448 -23.098 2.320 23.343 hybrid contribution -0.539 0.811 0.168 0.988 sum -2.987 -22.287 2.488 22.623 Atomic orbital electron populations 1.70056 1.07458 1.27959 1.50998 1.25856 0.95816 1.03027 0.94380 0.85405 0.78909 0.78809 0.77978 1.19139 1.20104 1.20122 1.21498 0.93514 0.92059 1.51553 0.92558 1.19121 0.94150 0.91635 0.96409 1.21200 0.95106 0.82675 0.99466 1.46166 1.11041 1.05517 1.73962 1.21448 0.87854 0.86633 0.74669 1.90650 1.16370 1.88490 1.52009 1.21313 0.97999 0.89997 1.02397 0.86113 1.21595 0.98044 0.99848 0.95211 1.20909 0.97266 0.91680 1.03818 1.21942 0.96423 0.99545 0.94950 0.89292 1.22793 0.96840 0.99985 0.98202 1.22681 0.98380 0.99497 0.87837 1.62154 1.51415 1.12176 1.06772 1.22480 0.90003 0.90976 0.98882 0.87974 1.21095 0.96419 0.92201 1.01659 0.92492 0.97209 0.97189 0.93973 0.93901 0.75344 0.90416 0.92583 0.89869 0.90296 0.92441 0.89573 0.92557 0.91010 0.83614 0.93554 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.14 6.18 5.61 86.38 0.48 6.67 16 11 N -0.72 -25.27 5.44 -463.05 -2.52 -27.78 16 12 C 0.51 17.46 7.15 87.66 0.63 18.09 16 13 O -0.59 -26.06 15.97 -3.04 -0.05 -26.10 16 14 C -0.10 -2.24 2.50 -11.60 -0.03 -2.27 16 15 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.11 -2.09 5.00 30.61 0.15 -1.94 16 17 C -0.10 -1.29 5.38 29.84 0.16 -1.13 16 18 C -0.11 -1.45 2.89 -10.76 -0.03 -1.48 16 19 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 20 C -0.14 -2.12 5.84 31.59 0.18 -1.93 16 21 C 0.05 0.72 7.30 86.74 0.63 1.35 16 22 N -0.70 -12.07 6.91 -480.46 -3.32 -15.39 16 23 C 0.09 1.45 3.93 44.84 0.18 1.62 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 C -0.07 -1.85 3.66 30.49 0.11 -1.74 16 26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.41 12.17 7.94 -92.70 -0.74 11.43 16 32 H 0.08 1.43 7.57 -2.39 -0.02 1.41 16 33 H 0.06 1.25 6.72 -2.39 -0.02 1.23 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.11 6.01 -2.39 -0.01 1.10 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.35 4.45 8.92 -89.69 -0.80 3.65 16 41 H 0.05 1.38 7.01 -2.39 -0.02 1.36 16 42 H 0.05 1.37 8.03 -2.39 -0.02 1.36 16 Total: -1.00 -69.31 327.34 -0.79 -70.09 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.53 Total: 18.41 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.32 Total: -11.24 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.56 Total: -97.11 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.31 -0.79 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310402341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.417 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds