Wall clock time and date at job start Mon Mar 30 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46901 * 240.00056 * 3 2 1 5 5 H 1.48497 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47040 * 120.00069 * 3 2 1 7 7 C 1.37880 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99405 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00210 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00169 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.08487 * 60.91462 * 14 12 11 16 16 C 1.52565 * 109.04816 * 301.84916 * 14 12 11 17 17 C 1.53861 * 112.07109 * 185.07122 * 16 14 12 18 18 C 1.51924 * 107.19529 * 57.05894 * 17 16 14 19 19 H 1.09002 * 110.99058 * 58.23144 * 18 17 16 20 20 C 1.53644 * 115.26708 * 185.59955 * 18 17 16 21 21 C 1.55332 * 101.85108 * 154.32385 * 20 18 17 22 22 N 1.48618 * 106.99680 * 337.44268 * 21 20 18 23 23 C 1.45825 * 107.00350 * 355.04005 * 22 21 20 24 24 H 1.09004 * 109.25055 * 273.99439 * 23 22 21 25 25 C 1.51436 * 117.65767 * 149.39943 * 23 22 21 26 26 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46961 * 60.00168 * 9 7 2 28 28 H 1.09003 * 109.47356 * 299.99893 * 9 7 2 29 29 H 1.09008 * 109.46468 * 59.99983 * 10 9 7 30 30 H 1.09000 * 109.46927 * 300.00554 * 10 9 7 31 31 H 0.97000 * 120.00123 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.07395 * 305.22791 * 16 14 12 33 33 H 1.09004 * 109.07744 * 64.25526 * 16 14 12 34 34 H 1.08995 * 108.77928 * 298.27697 * 17 16 14 35 35 H 1.08998 * 111.08484 * 177.12340 * 17 16 14 36 36 H 1.08997 * 110.95180 * 272.46833 * 20 18 17 37 37 H 1.09007 * 110.94950 * 36.18169 * 20 18 17 38 38 H 1.08998 * 109.92477 * 96.77687 * 21 20 18 39 39 H 1.09000 * 109.92586 * 217.89624 * 21 20 18 40 40 H 1.00896 * 111.00055 * 116.29786 * 22 21 20 41 41 H 1.09002 * 109.88289 * 298.06282 * 25 23 22 42 42 H 1.08996 * 109.88448 * 59.07451 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0981 0.0007 13 8 3.3993 -6.0981 0.0003 14 6 1.4330 -7.4031 0.0008 15 1 0.8215 -7.4616 -0.8997 16 6 0.5244 -7.4534 1.2254 17 6 -0.1865 -8.8111 1.3624 18 6 0.8923 -9.8793 1.4180 19 1 1.5740 -9.7030 2.2501 20 6 0.3810 -11.3282 1.4202 21 6 1.5902 -12.0942 0.8169 22 7 2.3847 -11.1082 0.0389 23 6 1.6438 -9.8524 0.0592 24 1 0.9160 -9.8513 -0.7523 25 6 2.4399 -8.5654 0.0015 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.5427 -4.9308 0.0000 32 1 1.1233 -7.2848 2.1204 33 1 -0.2254 -6.6663 1.1453 34 1 -0.8177 -8.9665 0.4876 35 1 -0.7912 -8.8473 2.2686 36 1 0.1724 -11.6663 2.4352 37 1 -0.5007 -11.4313 0.7876 38 1 2.2001 -12.5145 1.6166 39 1 1.2364 -12.8904 0.1621 40 1 3.3050 -10.9915 0.4358 41 1 3.0899 -8.4922 0.8734 42 1 3.0377 -8.5399 -0.9095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310402342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:30 Heat of formation + Delta-G solvation = -67.065206 kcal Electronic energy + Delta-G solvation = -20270.223539 eV Core-core repulsion = 17248.330356 eV Total energy + Delta-G solvation = -3021.893183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60164 -38.94699 -35.35242 -34.86596 -32.83960 -32.12307 -30.07667 -28.75169 -28.40002 -24.94910 -23.11979 -22.29827 -21.06325 -20.92806 -20.48148 -19.64402 -17.00869 -16.37308 -15.97909 -15.55938 -15.13834 -14.97721 -14.67703 -14.44650 -14.38401 -13.76750 -13.48588 -13.20825 -12.82511 -12.62555 -12.36262 -12.31427 -11.91542 -11.52626 -11.26345 -11.22376 -11.05398 -11.00383 -10.84904 -10.74483 -10.65170 -10.33853 -10.31762 -9.77319 -9.43811 -9.14806 -8.71227 -8.54260 -8.35479 -6.10418 -4.13362 3.00176 3.30413 3.34197 3.37058 3.57408 3.93000 4.34306 4.39818 4.42397 4.54594 4.73150 4.84515 4.95684 5.02471 5.14367 5.20652 5.23259 5.26547 5.36236 5.42556 5.50391 5.53869 5.67791 5.74582 5.81027 5.89765 5.95640 6.03581 6.15149 6.25809 6.34309 6.34578 6.61253 6.73158 6.92580 7.14513 7.50314 7.60459 7.87669 8.02024 8.26905 8.66101 8.92493 9.51493 11.01160 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.003134 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.258720 B = 8933.044916 C = 9315.799030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.509 3.491 13 O -0.551 6.551 14 C -0.101 4.101 15 H 0.095 0.905 16 C -0.113 4.113 17 C -0.102 4.102 18 C -0.130 4.130 19 H 0.077 0.923 20 C -0.137 4.137 21 C 0.044 3.956 22 N -0.670 5.670 23 C 0.073 3.927 24 H 0.082 0.918 25 C -0.092 4.092 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.337 0.663 41 H 0.071 0.929 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -22.118 2.853 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.371 5.371 12 C 0.294 3.706 13 O -0.429 6.429 14 C -0.123 4.123 15 H 0.113 0.887 16 C -0.151 4.151 17 C -0.140 4.140 18 C -0.150 4.150 19 H 0.096 0.904 20 C -0.175 4.175 21 C -0.085 4.085 22 N -0.297 5.297 23 C -0.037 4.037 24 H 0.100 0.900 25 C -0.131 4.131 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.504 -22.193 2.171 22.350 hybrid contribution 0.024 1.333 0.944 1.633 sum -1.481 -20.860 3.115 21.144 Atomic orbital electron populations 1.69941 1.06091 1.26999 1.50305 1.24995 0.94896 0.99403 0.94961 0.86570 0.79525 0.82640 0.78796 1.20093 1.21223 1.20108 1.21021 0.93214 0.90435 1.51475 0.92321 1.19312 0.94182 0.91131 0.97787 1.21716 0.96056 0.81662 1.00713 1.46357 1.10486 1.06591 1.73695 1.20505 0.88152 0.85470 0.76485 1.90669 1.14057 1.87817 1.50347 1.21285 0.97369 0.93069 1.00571 0.88688 1.21549 0.98335 0.97890 0.97337 1.21376 0.96894 0.93443 1.02239 1.22684 0.98785 0.94432 0.99146 0.90423 1.22669 0.98538 0.95142 1.01182 1.23061 0.94090 0.95640 0.95731 1.62028 1.05535 1.07688 1.54497 1.22078 0.95971 0.89062 0.96596 0.90030 1.21224 0.96849 0.91144 1.03845 0.92777 0.95966 0.95995 0.92662 0.92614 0.76945 0.91568 0.90899 0.91467 0.91193 0.91141 0.90859 0.92685 0.90671 0.84725 0.91065 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.58 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.43 5.44 -60.29 -0.33 -12.76 16 12 C 0.51 8.44 7.15 -10.99 -0.08 8.36 16 13 O -0.55 -11.27 15.96 5.55 0.09 -11.18 16 14 C -0.10 -1.20 2.50 -91.59 -0.23 -1.42 16 15 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.11 -1.15 4.92 -26.51 -0.13 -1.28 16 17 C -0.10 -0.84 5.68 -26.83 -0.15 -0.99 16 18 C -0.13 -1.11 2.59 -89.62 -0.23 -1.34 16 19 H 0.08 0.72 8.12 -51.93 -0.42 0.29 16 20 C -0.14 -1.00 6.54 -25.16 -0.16 -1.17 16 21 C 0.04 0.34 7.62 -1.64 -0.01 0.33 16 22 N -0.67 -6.32 7.40 -104.37 -0.77 -7.09 16 23 C 0.07 0.71 2.72 -67.87 -0.18 0.52 16 24 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 25 C -0.09 -1.07 4.33 -27.11 -0.12 -1.18 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 5.90 7.80 -40.82 -0.32 5.58 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 34 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.34 2.98 8.74 -39.29 -0.34 2.63 16 41 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -31.07 332.14 -9.50 -40.57 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.33 Total: 3.16 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.88 Total: -8.72 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.36 Total: -45.22 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.07 -9.50 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310402342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.490 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds