Wall clock time and date at job start Mon Mar 30 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46901 * 240.00056 * 3 2 1 5 5 H 1.48497 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47040 * 120.00069 * 3 2 1 7 7 C 1.37880 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99405 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00210 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99767 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00169 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.08487 * 60.91462 * 14 12 11 16 16 C 1.52565 * 109.04816 * 301.84916 * 14 12 11 17 17 C 1.53861 * 112.07109 * 185.07122 * 16 14 12 18 18 C 1.51924 * 107.19529 * 57.05894 * 17 16 14 19 19 H 1.09002 * 110.99058 * 58.23144 * 18 17 16 20 20 C 1.53644 * 115.26708 * 185.59955 * 18 17 16 21 21 C 1.55332 * 101.85108 * 154.32385 * 20 18 17 22 22 N 1.48618 * 106.99680 * 337.44268 * 21 20 18 23 23 C 1.45825 * 107.00350 * 355.04005 * 22 21 20 24 24 H 1.09004 * 109.25055 * 273.99439 * 23 22 21 25 25 C 1.51436 * 117.65767 * 149.39943 * 23 22 21 26 26 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46961 * 60.00168 * 9 7 2 28 28 H 1.09003 * 109.47356 * 299.99893 * 9 7 2 29 29 H 1.09008 * 109.46468 * 59.99983 * 10 9 7 30 30 H 1.09000 * 109.46927 * 300.00554 * 10 9 7 31 31 H 0.97000 * 120.00123 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.07395 * 305.22791 * 16 14 12 33 33 H 1.09004 * 109.07744 * 64.25526 * 16 14 12 34 34 H 1.08995 * 108.77928 * 298.27697 * 17 16 14 35 35 H 1.08998 * 111.08484 * 177.12340 * 17 16 14 36 36 H 1.08997 * 110.95180 * 272.46833 * 20 18 17 37 37 H 1.09007 * 110.94950 * 36.18169 * 20 18 17 38 38 H 1.08998 * 109.92477 * 96.77687 * 21 20 18 39 39 H 1.09000 * 109.92586 * 217.89624 * 21 20 18 40 40 H 1.00896 * 111.00055 * 116.29786 * 22 21 20 41 41 H 1.09002 * 109.88289 * 298.06282 * 25 23 22 42 42 H 1.08996 * 109.88448 * 59.07451 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1865 -6.0981 0.0007 13 8 3.3993 -6.0981 0.0003 14 6 1.4330 -7.4031 0.0008 15 1 0.8215 -7.4616 -0.8997 16 6 0.5244 -7.4534 1.2254 17 6 -0.1865 -8.8111 1.3624 18 6 0.8923 -9.8793 1.4180 19 1 1.5740 -9.7030 2.2501 20 6 0.3810 -11.3282 1.4202 21 6 1.5902 -12.0942 0.8169 22 7 2.3847 -11.1082 0.0389 23 6 1.6438 -9.8524 0.0592 24 1 0.9160 -9.8513 -0.7523 25 6 2.4399 -8.5654 0.0015 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.5427 -4.9308 0.0000 32 1 1.1233 -7.2848 2.1204 33 1 -0.2254 -6.6663 1.1453 34 1 -0.8177 -8.9665 0.4876 35 1 -0.7912 -8.8473 2.2686 36 1 0.1724 -11.6663 2.4352 37 1 -0.5007 -11.4313 0.7876 38 1 2.2001 -12.5145 1.6166 39 1 1.2364 -12.8904 0.1621 40 1 3.3050 -10.9915 0.4358 41 1 3.0899 -8.4922 0.8734 42 1 3.0377 -8.5399 -0.9095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310402342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:30 Heat of formation + Delta-G solvation = -88.611075 kcal Electronic energy + Delta-G solvation = -20271.157838 eV Core-core repulsion = 17248.330356 eV Total energy + Delta-G solvation = -3022.827482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57214 -40.12742 -36.66397 -36.17695 -34.81129 -32.90971 -31.73517 -29.80124 -29.19469 -26.78444 -24.25229 -23.18586 -22.74994 -21.72526 -21.28289 -20.88854 -18.60143 -18.05252 -16.95825 -16.62142 -16.61554 -16.42010 -15.86587 -15.66961 -15.34719 -14.81957 -14.67117 -14.45055 -14.28799 -13.66245 -13.50262 -13.36354 -13.21956 -12.93147 -12.69971 -12.53987 -12.33865 -12.23388 -12.03214 -11.78812 -11.65709 -11.58070 -11.51037 -11.45049 -11.13738 -10.66411 -10.61106 -10.01885 -9.40639 -8.25227 -6.35846 1.40935 1.43060 1.51129 1.64400 2.23622 2.44172 3.09396 3.13350 3.50934 3.64951 3.80195 3.92504 4.03487 4.10570 4.24654 4.34188 4.44028 4.45313 4.47780 4.51980 4.53794 4.60220 4.83591 4.87009 4.89641 4.96530 5.06145 5.14678 5.16090 5.19898 5.21160 5.29244 5.32598 5.48167 5.52258 5.56931 5.77526 5.92626 6.15222 6.43950 6.62645 6.77105 7.27925 7.33486 8.86371 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.003134 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.258720 B = 8933.044916 C = 9315.799030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.507 3.493 13 O -0.591 6.591 14 C -0.089 4.089 15 H 0.117 0.883 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.127 4.127 19 H 0.069 0.931 20 C -0.131 4.131 21 C 0.042 3.958 22 N -0.683 5.683 23 C 0.078 3.922 24 H 0.082 0.918 25 C -0.087 4.087 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.410 0.590 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.338 0.662 41 H 0.056 0.944 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -22.999 3.141 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.367 5.367 12 C 0.295 3.705 13 O -0.472 6.472 14 C -0.110 4.110 15 H 0.135 0.865 16 C -0.149 4.149 17 C -0.132 4.132 18 C -0.147 4.147 19 H 0.088 0.912 20 C -0.169 4.169 21 C -0.087 4.087 22 N -0.311 5.311 23 C -0.032 4.032 24 H 0.100 0.900 25 C -0.125 4.125 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.246 0.754 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.345 -23.101 2.462 23.350 hybrid contribution 0.302 1.571 0.847 1.810 sum -2.043 -21.531 3.308 21.879 Atomic orbital electron populations 1.70041 1.07497 1.28108 1.50852 1.25858 0.95804 1.03042 0.94355 0.85515 0.78343 0.78194 0.79110 1.19395 1.20466 1.19367 1.21448 0.93550 0.92053 1.51778 0.92453 1.19115 0.94165 0.91664 0.96365 1.21209 0.95085 0.82564 0.99580 1.46181 1.11076 1.05574 1.73850 1.21355 0.87870 0.86498 0.74781 1.90650 1.16138 1.88442 1.52007 1.21279 0.97290 0.89902 1.02573 0.86541 1.21552 0.98003 0.99701 0.95606 1.21351 0.96707 0.91692 1.03472 1.22652 0.98622 0.95529 0.97924 0.91246 1.22646 0.98376 0.93839 1.02018 1.23134 0.94285 0.95322 0.95977 1.62044 1.05911 1.07802 1.55310 1.21966 0.95572 0.88207 0.97456 0.90006 1.21136 0.96683 0.92378 1.02332 0.92479 0.97288 0.97238 0.93799 0.93790 0.75356 0.92828 0.90119 0.90268 0.89853 0.89917 0.90278 0.91722 0.90345 0.84643 0.92503 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.14 6.06 5.61 86.38 0.48 6.54 16 11 N -0.72 -24.63 5.44 -463.05 -2.52 -27.15 16 12 C 0.51 16.81 7.15 87.66 0.63 17.44 16 13 O -0.59 -24.71 15.96 -3.05 -0.05 -24.76 16 14 C -0.09 -2.01 2.50 -11.42 -0.03 -2.04 16 15 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 16 C -0.11 -2.05 4.92 30.74 0.15 -1.90 16 17 C -0.09 -1.30 5.68 30.53 0.17 -1.13 16 18 C -0.13 -1.89 2.59 -10.14 -0.03 -1.92 16 19 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 20 C -0.13 -1.55 6.54 31.61 0.21 -1.35 16 21 C 0.04 0.55 7.62 86.77 0.66 1.22 16 22 N -0.68 -12.03 7.40 -484.13 -3.58 -15.61 16 23 C 0.08 1.41 2.72 45.39 0.12 1.53 16 24 H 0.08 1.49 7.91 -2.38 -0.02 1.48 16 25 C -0.09 -1.98 4.33 30.35 0.13 -1.85 16 26 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.41 11.92 7.80 -92.71 -0.72 11.20 16 32 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.08 1.39 7.52 -2.38 -0.02 1.37 16 34 H 0.08 0.95 8.01 -2.39 -0.02 0.93 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.88 8.13 -2.38 -0.02 0.86 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.34 5.76 8.74 -89.70 -0.78 4.98 16 41 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -66.63 332.14 -0.99 -67.62 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.51 Total: 19.88 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.35 Total: -11.78 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -5.82 Total: -96.62 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.63 -0.99 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310402342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.987 kcal (2) G-P(sol) polarization free energy of solvation -66.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds