Wall clock time and date at job start Mon Mar 30 2020 05:58:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42900 * 113.99962 * 2 1
4 4 C 1.52988 * 109.47152 * 179.97438 * 3 2 1
5 5 C 1.53011 * 109.47252 * 180.02562 * 4 3 2
6 6 C 1.53002 * 113.37940 * 313.07661 * 5 4 3
7 7 C 1.53515 * 114.16834 * 180.02562 * 5 4 3
8 8 N 1.47486 * 87.92899 * 220.32700 * 7 5 4
9 9 C 1.46895 * 110.99945 * 138.70531 * 8 7 5
10 10 C 1.52994 * 109.47270 * 169.99870 * 9 8 7
11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8
12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8
13 13 N 9.26423 * 131.76230 * 10.96221 * 2 1 3
14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8
15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9
16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10
17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10
18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14
19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14
20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15
21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15
23 23 C 1.47479 * 87.83498 * 27.01274 * 8 7 5
24 24 H 1.09005 * 109.46504 * 60.00219 * 1 2 3
25 25 H 1.09001 * 109.46868 * 179.97438 * 1 2 3
26 26 H 1.08998 * 109.47332 * 300.00243 * 1 2 3
27 27 H 1.09001 * 109.47049 * 59.99453 * 3 2 1
28 28 H 1.09002 * 109.46879 * 300.00037 * 3 2 1
29 29 H 1.09001 * 109.47242 * 59.99997 * 4 3 2
30 30 H 1.09002 * 109.47607 * 300.00018 * 4 3 2
31 31 H 1.08996 * 109.47110 * 286.92506 * 6 5 4
32 32 H 1.09002 * 109.46911 * 46.92445 * 6 5 4
33 33 H 1.08998 * 109.46641 * 166.91777 * 6 5 4
34 34 H 1.08998 * 113.47393 * 105.56326 * 7 5 4
35 35 H 1.08994 * 113.53379 * 335.10124 * 7 5 4
36 36 H 1.08998 * 109.47324 * 49.99871 * 9 8 7
37 37 H 1.09002 * 109.47421 * 290.00049 * 9 8 7
38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9
39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9
40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15
41 41 H 1.08997 * 113.47796 * 87.75860 * 23 8 7
42 42 H 1.08998 * 113.47510 * 218.22152 * 23 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1577 2.5825 0.0013
6 6 3.5289 3.5276 -1.0246
7 6 5.6929 2.5870 0.0013
8 7 5.6363 3.7100 0.9557
9 6 6.6473 3.5563 2.0101
10 6 6.7295 4.8455 2.8298
11 1 5.7396 5.0979 3.2103
12 6 7.2206 5.9394 1.9760
13 7 7.5994 6.7842 1.3141
14 6 7.6905 4.6436 4.0031
15 6 7.6781 5.8696 4.8793
16 1 7.0476 6.7088 4.6251
17 6 8.4672 5.9176 6.0090
18 7 9.2347 4.8956 6.3188
19 14 8.4460 7.4342 7.0993
20 1 7.0703 7.6555 7.6130
21 1 9.3752 7.2363 8.2407
22 1 8.8762 8.6168 6.3108
23 6 4.3277 3.1942 1.3990
24 1 -0.3632 0.5138 -0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 0.8899
27 1 1.6886 1.8464 0.8899
28 1 1.6886 1.8464 -0.8900
29 1 3.8574 0.6436 -0.8891
30 1 3.8567 0.6439 0.8908
31 1 3.8502 3.2422 -2.0263
32 1 2.4427 3.4637 -0.9594
33 1 3.8458 4.5499 -0.8187
34 1 6.1263 2.8569 -0.9616
35 1 6.1307 1.6817 0.4217
36 1 7.6171 3.3517 1.5566
37 1 6.3693 2.7283 2.6622
38 1 8.6987 4.4790 3.6228
39 1 7.3760 3.7776 4.5855
40 1 9.7901 4.9295 7.1134
41 1 4.4002 2.4506 2.1926
42 1 3.6041 3.9788 1.6204
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345476130.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:58:07
Heat of formation + Delta-G solvation = -22.995464 kcal
Electronic energy + Delta-G solvation = -19964.554433 eV
Core-core repulsion = 16944.572257 eV
Total energy + Delta-G solvation = -3019.982176 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.61385 -38.78807 -38.04907 -35.73862 -34.79193 -33.20988 -30.21661 -28.74094
-27.27844 -26.89919 -26.44807 -24.39895 -23.51494 -22.25636 -19.25383 -18.55872
-18.27075 -17.45563 -16.93757 -16.70488 -16.49739 -16.11153 -15.79911 -15.39902
-14.95422 -14.82325 -14.30281 -14.17995 -14.04750 -13.78169 -13.36862 -13.22746
-13.15287 -13.00474 -12.79605 -12.62205 -12.47815 -12.33663 -12.23974 -12.15511
-11.86232 -11.73964 -11.62178 -11.29927 -10.98421 -10.97581 -10.56136 -10.50447
-9.74480 -8.20495 -6.28991 1.40080 1.41966 1.49101 2.02779 2.09973
2.40714 2.81544 3.11488 3.15094 3.32744 3.40571 3.83760 4.03581
4.18289 4.21626 4.29294 4.38239 4.42013 4.57282 4.57786 4.60078
4.63586 4.65895 4.75801 4.82709 4.86946 4.90135 4.94880 5.00317
5.04030 5.14165 5.21458 5.26926 5.44040 5.45014 5.55341 5.62828
5.77683 6.10598 6.22328 6.30676 6.81169 6.90789 7.39497 8.90253
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.026592 B = 0.003480 C = 0.003286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.697741 B = 8043.917211 C = 8518.923100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.419 6.419
3 C 0.059 3.941
4 C -0.095 4.095
5 C -0.073 4.073
6 C -0.124 4.124
7 C 0.007 3.993
8 N -0.493 5.493
9 C 0.037 3.963
10 C 0.028 3.972
11 H 0.112 0.888
12 C 0.266 3.734
13 N -0.516 5.516
14 C 0.039 3.961
15 C -0.541 4.541
16 H 0.052 0.948
17 C 0.012 3.988
18 N -0.923 5.923
19 Si 0.949 3.051
20 H -0.262 1.262
21 H -0.281 1.281
22 H -0.282 1.282
23 C 0.002 3.998
24 H 0.049 0.951
25 H 0.094 0.906
26 H 0.047 0.953
27 H 0.053 0.947
28 H 0.062 0.938
29 H 0.076 0.924
30 H 0.071 0.929
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.051 0.949
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.082 0.918
38 H 0.000 1.000
39 H 0.035 0.965
40 H 0.265 0.735
41 H 0.083 0.917
42 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.060 -11.376 -12.323 23.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.339 6.339
3 C -0.017 4.017
4 C -0.133 4.133
5 C -0.074 4.074
6 C -0.181 4.181
7 C -0.121 4.121
8 N -0.215 5.215
9 C -0.093 4.093
10 C 0.006 3.994
11 H 0.130 0.870
12 C -0.050 4.050
13 N -0.194 5.194
14 C 0.000 4.000
15 C -0.579 4.579
16 H 0.071 0.929
17 C -0.187 4.187
18 N -0.563 5.563
19 Si 0.774 3.226
20 H -0.187 1.187
21 H -0.206 1.206
22 H -0.207 1.207
23 C -0.127 4.127
24 H 0.068 0.932
25 H 0.112 0.888
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.080 0.920
29 H 0.094 0.906
30 H 0.089 0.911
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.070 0.930
34 H 0.099 0.901
35 H 0.100 0.900
36 H 0.090 0.910
37 H 0.100 0.900
38 H 0.018 0.982
39 H 0.054 0.946
40 H 0.073 0.927
41 H 0.101 0.899
42 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -16.151 -9.618 -13.397 23.083
hybrid contribution 0.229 0.074 1.463 1.482
sum -15.922 -9.544 -11.934 22.069
Atomic orbital electron populations
1.22895 0.79785 1.03626 1.00739 1.87822 1.21237 1.29216 1.95608
1.22686 0.93911 0.84097 1.01002 1.21349 0.93248 0.95220 1.03441
1.21824 0.94555 0.95096 0.95886 1.21562 1.00689 0.98233 0.97633
1.23965 0.96232 0.93780 0.98137 1.68917 1.02928 1.38532 1.11082
1.22666 0.97467 0.95260 0.93891 1.19054 1.00873 0.87749 0.91754
0.87000 1.29493 0.91025 0.93275 0.91174 1.81059 1.11863 1.12679
1.13808 1.18992 0.93246 0.96908 0.90870 1.21522 1.25054 1.02452
1.08901 0.92937 1.25719 0.95032 0.98833 0.99141 1.70025 1.27366
1.31884 1.27018 0.85747 0.78655 0.79807 0.78370 1.18672 1.20587
1.20745 1.24193 0.92679 0.99000 0.96791 0.93192 0.88777 0.93469
0.92894 0.91968 0.90561 0.91069 0.91676 0.90980 0.93032 0.90089
0.89999 0.90993 0.89958 0.98161 0.94647 0.92652 0.89904 0.89811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 11.01 113.37 1.25 1.56 16
2 O -0.42 -7.61 10.70 -148.98 -1.59 -9.20 16
3 C 0.06 0.89 5.30 71.98 0.38 1.27 16
4 C -0.09 -1.45 5.24 30.59 0.16 -1.29 16
5 C -0.07 -1.24 1.18 -51.83 -0.06 -1.30 16
6 C -0.12 -2.04 8.89 71.98 0.64 -1.40 16
7 C 0.01 0.15 6.84 83.58 0.57 0.72 16
8 N -0.49 -12.56 5.84 -927.75 -5.42 -17.97 16
9 C 0.04 1.07 4.18 86.30 0.36 1.43 16
10 C 0.03 1.03 2.42 -12.60 -0.03 1.00 16
11 H 0.11 3.90 8.14 -2.38 -0.02 3.88 16
12 C 0.27 11.41 13.68 89.42 1.22 12.64 16
13 N -0.52 -24.11 18.55 20.03 0.37 -23.74 16
14 C 0.04 1.81 4.42 29.85 0.13 1.94 16
15 C -0.54 -29.12 8.60 25.60 0.22 -28.90 16
16 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16
17 C 0.01 0.65 5.46 84.66 0.46 1.11 16
18 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16
19 Si 0.95 43.76 29.54 68.60 2.03 45.79 16
20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16
21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16
23 C 0.00 0.04 6.81 83.58 0.57 0.61 16
24 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16
25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.06 0.81 6.36 -2.39 -0.02 0.79 16
29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
30 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16
31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.07 0.96 5.97 -2.39 -0.01 0.95 16
33 H 0.05 1.06 7.92 -2.39 -0.02 1.04 16
34 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16
35 H 0.08 1.48 7.87 -2.39 -0.02 1.47 16
36 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16
37 H 0.08 2.08 7.30 -2.39 -0.02 2.06 16
38 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16
39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
40 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16
41 H 0.08 1.55 7.21 -2.39 -0.02 1.53 16
42 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16
Total: -1.00 -65.29 347.28 2.52 -62.76
By element:
Atomic # 1 Polarization: 5.09 SS G_CDS: 0.97 Total: 6.06 kcal
Atomic # 6 Polarization: -16.50 SS G_CDS: 5.88 Total: -10.63 kcal
Atomic # 7 Polarization: -90.03 SS G_CDS: -4.76 Total: -94.79 kcal
Atomic # 8 Polarization: -7.61 SS G_CDS: -1.59 Total: -9.20 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -65.29 2.52 -62.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345476130.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.769 kcal
(2) G-P(sol) polarization free energy of solvation -65.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds