Wall clock time and date at job start Mon Mar 30 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99962 * 2 1 4 4 C 1.52988 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.47252 * 180.02562 * 4 3 2 6 6 C 1.53002 * 113.37940 * 313.07661 * 5 4 3 7 7 C 1.53515 * 114.16834 * 180.02562 * 5 4 3 8 8 N 1.47486 * 87.92899 * 220.32700 * 7 5 4 9 9 C 1.46895 * 110.99945 * 138.70531 * 8 7 5 10 10 C 1.52994 * 109.47270 * 169.99870 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.26423 * 131.76230 * 10.96221 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47479 * 87.83498 * 27.01274 * 8 7 5 24 24 H 1.09005 * 109.46504 * 60.00219 * 1 2 3 25 25 H 1.09001 * 109.46868 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47332 * 300.00243 * 1 2 3 27 27 H 1.09001 * 109.47049 * 59.99453 * 3 2 1 28 28 H 1.09002 * 109.46879 * 300.00037 * 3 2 1 29 29 H 1.09001 * 109.47242 * 59.99997 * 4 3 2 30 30 H 1.09002 * 109.47607 * 300.00018 * 4 3 2 31 31 H 1.08996 * 109.47110 * 286.92506 * 6 5 4 32 32 H 1.09002 * 109.46911 * 46.92445 * 6 5 4 33 33 H 1.08998 * 109.46641 * 166.91777 * 6 5 4 34 34 H 1.08998 * 113.47393 * 105.56326 * 7 5 4 35 35 H 1.08994 * 113.53379 * 335.10124 * 7 5 4 36 36 H 1.08998 * 109.47324 * 49.99871 * 9 8 7 37 37 H 1.09002 * 109.47421 * 290.00049 * 9 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.47796 * 87.75860 * 23 8 7 42 42 H 1.08998 * 113.47510 * 218.22152 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 3.5289 3.5276 -1.0246 7 6 5.6929 2.5870 0.0013 8 7 5.6363 3.7100 0.9557 9 6 6.6473 3.5563 2.0101 10 6 6.7295 4.8455 2.8298 11 1 5.7396 5.0979 3.2103 12 6 7.2206 5.9394 1.9760 13 7 7.5994 6.7842 1.3141 14 6 7.6905 4.6436 4.0031 15 6 7.6781 5.8696 4.8793 16 1 7.0476 6.7088 4.6251 17 6 8.4672 5.9176 6.0090 18 7 9.2347 4.8956 6.3188 19 14 8.4460 7.4342 7.0993 20 1 7.0703 7.6555 7.6130 21 1 9.3752 7.2363 8.2407 22 1 8.8762 8.6168 6.3108 23 6 4.3277 3.1942 1.3990 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 3.8502 3.2422 -2.0263 32 1 2.4427 3.4637 -0.9594 33 1 3.8458 4.5499 -0.8187 34 1 6.1263 2.8569 -0.9616 35 1 6.1307 1.6817 0.4217 36 1 7.6171 3.3517 1.5566 37 1 6.3693 2.7283 2.6622 38 1 8.6987 4.4790 3.6228 39 1 7.3760 3.7776 4.5855 40 1 9.7901 4.9295 7.1134 41 1 4.4002 2.4506 2.1926 42 1 3.6041 3.9788 1.6204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345476130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:07 Heat of formation + Delta-G solvation = -22.995464 kcal Electronic energy + Delta-G solvation = -19964.554433 eV Core-core repulsion = 16944.572257 eV Total energy + Delta-G solvation = -3019.982176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61385 -38.78807 -38.04907 -35.73862 -34.79193 -33.20988 -30.21661 -28.74094 -27.27844 -26.89919 -26.44807 -24.39895 -23.51494 -22.25636 -19.25383 -18.55872 -18.27075 -17.45563 -16.93757 -16.70488 -16.49739 -16.11153 -15.79911 -15.39902 -14.95422 -14.82325 -14.30281 -14.17995 -14.04750 -13.78169 -13.36862 -13.22746 -13.15287 -13.00474 -12.79605 -12.62205 -12.47815 -12.33663 -12.23974 -12.15511 -11.86232 -11.73964 -11.62178 -11.29927 -10.98421 -10.97581 -10.56136 -10.50447 -9.74480 -8.20495 -6.28991 1.40080 1.41966 1.49101 2.02779 2.09973 2.40714 2.81544 3.11488 3.15094 3.32744 3.40571 3.83760 4.03581 4.18289 4.21626 4.29294 4.38239 4.42013 4.57282 4.57786 4.60078 4.63586 4.65895 4.75801 4.82709 4.86946 4.90135 4.94880 5.00317 5.04030 5.14165 5.21458 5.26926 5.44040 5.45014 5.55341 5.62828 5.77683 6.10598 6.22328 6.30676 6.81169 6.90789 7.39497 8.90253 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.003480 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.697741 B = 8043.917211 C = 8518.923100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.059 3.941 4 C -0.095 4.095 5 C -0.073 4.073 6 C -0.124 4.124 7 C 0.007 3.993 8 N -0.493 5.493 9 C 0.037 3.963 10 C 0.028 3.972 11 H 0.112 0.888 12 C 0.266 3.734 13 N -0.516 5.516 14 C 0.039 3.961 15 C -0.541 4.541 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.949 3.051 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.002 3.998 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.000 1.000 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.083 0.917 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 -11.376 -12.323 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.017 4.017 4 C -0.133 4.133 5 C -0.074 4.074 6 C -0.181 4.181 7 C -0.121 4.121 8 N -0.215 5.215 9 C -0.093 4.093 10 C 0.006 3.994 11 H 0.130 0.870 12 C -0.050 4.050 13 N -0.194 5.194 14 C 0.000 4.000 15 C -0.579 4.579 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.018 0.982 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.151 -9.618 -13.397 23.083 hybrid contribution 0.229 0.074 1.463 1.482 sum -15.922 -9.544 -11.934 22.069 Atomic orbital electron populations 1.22895 0.79785 1.03626 1.00739 1.87822 1.21237 1.29216 1.95608 1.22686 0.93911 0.84097 1.01002 1.21349 0.93248 0.95220 1.03441 1.21824 0.94555 0.95096 0.95886 1.21562 1.00689 0.98233 0.97633 1.23965 0.96232 0.93780 0.98137 1.68917 1.02928 1.38532 1.11082 1.22666 0.97467 0.95260 0.93891 1.19054 1.00873 0.87749 0.91754 0.87000 1.29493 0.91025 0.93275 0.91174 1.81059 1.11863 1.12679 1.13808 1.18992 0.93246 0.96908 0.90870 1.21522 1.25054 1.02452 1.08901 0.92937 1.25719 0.95032 0.98833 0.99141 1.70025 1.27366 1.31884 1.27018 0.85747 0.78655 0.79807 0.78370 1.18672 1.20587 1.20745 1.24193 0.92679 0.99000 0.96791 0.93192 0.88777 0.93469 0.92894 0.91968 0.90561 0.91069 0.91676 0.90980 0.93032 0.90089 0.89999 0.90993 0.89958 0.98161 0.94647 0.92652 0.89904 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.61 10.70 -148.98 -1.59 -9.20 16 3 C 0.06 0.89 5.30 71.98 0.38 1.27 16 4 C -0.09 -1.45 5.24 30.59 0.16 -1.29 16 5 C -0.07 -1.24 1.18 -51.83 -0.06 -1.30 16 6 C -0.12 -2.04 8.89 71.98 0.64 -1.40 16 7 C 0.01 0.15 6.84 83.58 0.57 0.72 16 8 N -0.49 -12.56 5.84 -927.75 -5.42 -17.97 16 9 C 0.04 1.07 4.18 86.30 0.36 1.43 16 10 C 0.03 1.03 2.42 -12.60 -0.03 1.00 16 11 H 0.11 3.90 8.14 -2.38 -0.02 3.88 16 12 C 0.27 11.41 13.68 89.42 1.22 12.64 16 13 N -0.52 -24.11 18.55 20.03 0.37 -23.74 16 14 C 0.04 1.81 4.42 29.85 0.13 1.94 16 15 C -0.54 -29.12 8.60 25.60 0.22 -28.90 16 16 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 19 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 C 0.00 0.04 6.81 83.58 0.57 0.61 16 24 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.81 6.36 -2.39 -0.02 0.79 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.96 5.97 -2.39 -0.01 0.95 16 33 H 0.05 1.06 7.92 -2.39 -0.02 1.04 16 34 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 35 H 0.08 1.48 7.87 -2.39 -0.02 1.47 16 36 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 37 H 0.08 2.08 7.30 -2.39 -0.02 2.06 16 38 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 41 H 0.08 1.55 7.21 -2.39 -0.02 1.53 16 42 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -65.29 347.28 2.52 -62.76 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.97 Total: 6.06 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.88 Total: -10.63 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.76 Total: -94.79 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.59 Total: -9.20 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.29 2.52 -62.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345476130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.769 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds