Wall clock time and date at job start Mon Mar 30 2020 05:24:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86801 * 120.00004 * 2 1
4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.46926 * 300.00375 * 3 2 1
6 6 H 1.48500 * 109.46647 * 60.00316 * 3 2 1
7 7 C 1.40053 * 119.99764 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99365 * 179.97438 * 7 2 1
9 9 C 1.46371 * 119.99979 * 0.27229 * 7 2 1
10 10 O 1.21685 * 120.00167 * 354.00648 * 9 7 2
11 11 N 1.34784 * 119.99675 * 174.00677 * 9 7 2
12 12 C 1.46923 * 120.63065 * 5.27123 * 11 9 7
13 13 C 1.53188 * 108.77316 * 233.58365 * 12 11 9
14 14 C 1.53038 * 109.31320 * 305.36477 * 13 12 11
15 15 C 1.53038 * 109.53648 * 61.36783 * 14 13 12
16 16 H 1.08998 * 109.49964 * 58.58667 * 15 14 13
17 17 N 1.46907 * 109.49428 * 178.68238 * 15 14 13
18 18 C 1.46842 * 110.99811 * 304.20816 * 17 15 14
19 19 C 1.53041 * 109.52058 * 174.16528 * 18 17 15
20 20 C 1.53117 * 109.28101 * 59.17657 * 19 18 17
21 21 C 1.53115 * 109.15941 * 302.34855 * 20 19 18
22 22 C 1.46843 * 110.99512 * 180.02562 * 17 15 14
23 23 C 1.46927 * 120.62823 * 184.99032 * 11 9 7
24 24 H 0.96997 * 120.00128 * 359.97438 * 1 2 3
25 25 H 1.09000 * 109.58831 * 353.37231 * 12 11 9
26 26 H 1.08999 * 109.58368 * 113.79729 * 12 11 9
27 27 H 1.09002 * 109.50046 * 65.32126 * 13 12 11
28 28 H 1.09006 * 109.49438 * 185.41283 * 13 12 11
29 29 H 1.09003 * 109.45968 * 181.38707 * 14 13 12
30 30 H 1.08998 * 109.46340 * 301.35549 * 14 13 12
31 31 H 1.09006 * 109.46649 * 294.17733 * 18 17 15
32 32 H 1.08997 * 109.46601 * 54.14742 * 18 17 15
33 33 H 1.09006 * 109.50268 * 299.23655 * 19 18 17
34 34 H 1.08998 * 109.53502 * 179.13983 * 19 18 17
35 35 H 1.09001 * 109.52087 * 182.43950 * 20 19 18
36 36 H 1.09006 * 109.52132 * 62.25486 * 20 19 18
37 37 H 1.08995 * 109.50316 * 297.70893 * 21 20 19
38 38 H 1.09004 * 109.53197 * 177.61571 * 21 20 19
39 39 H 1.09003 * 109.46210 * 305.85134 * 22 17 15
40 40 H 1.08998 * 109.46688 * 65.82507 * 22 17 15
41 41 H 1.09005 * 109.58645 * 246.20442 * 23 11 9
42 42 H 1.09000 * 109.58658 * 6.62424 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 3.7007 1.3463 -0.0006
5 1 1.8819 2.3964 -1.2124
6 1 1.8820 2.3963 1.2126
7 6 2.0069 -1.2129 -0.0005
8 1 3.0870 -1.2128 -0.0010
9 6 1.2750 -2.4805 -0.0071
10 8 0.0627 -2.4837 0.0979
11 7 1.9440 -3.6442 -0.1295
12 6 3.4130 -3.6656 -0.1415
13 6 3.8850 -4.4116 -1.3934
14 6 3.2360 -5.7969 -1.4320
15 6 1.7146 -5.6474 -1.5037
16 1 1.4468 -5.0742 -2.3912
17 7 1.0940 -6.9772 -1.5725
18 6 1.6258 -7.7482 -2.7035
19 6 1.0679 -9.1726 -2.6588
20 6 -0.4608 -9.1192 -2.7271
21 6 -0.9863 -8.2704 -1.5662
22 6 -0.3689 -6.8721 -1.6433
23 6 1.2179 -4.9161 -0.2474
24 1 -0.4850 0.8400 0.0004
25 1 3.7932 -2.6442 -0.1596
26 1 3.7781 -4.1779 0.7486
27 1 3.5969 -3.8499 -2.2820
28 1 4.9695 -4.5185 -1.3659
29 1 3.5893 -6.3392 -2.3090
30 1 3.5044 -6.3490 -0.5313
31 1 1.3309 -7.2719 -3.6385
32 1 2.7135 -7.7820 -2.6406
33 1 1.3741 -9.6544 -1.7301
34 1 1.4505 -9.7406 -3.5067
35 1 -0.8642 -10.1290 -2.6520
36 1 -0.7677 -8.6728 -3.6730
37 1 -0.7126 -8.7379 -0.6205
38 1 -2.0716 -8.1932 -1.6333
39 1 -0.7304 -6.2694 -0.8100
40 1 -0.6542 -6.4001 -2.5834
41 1 1.4078 -5.5283 0.6342
42 1 0.1493 -4.7201 -0.3354
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000364391860.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:05
Heat of formation + Delta-G solvation = -41.335496 kcal
Electronic energy + Delta-G solvation = -21311.582084 eV
Core-core repulsion = 18290.804625 eV
Total energy + Delta-G solvation = -3020.777459 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.53742 -37.81833 -35.68305 -33.26043 -32.57864 -31.41282 -30.53334 -29.08763
-26.36487 -24.58877 -24.00866 -22.58005 -21.51314 -20.16034 -19.62507 -18.79561
-16.82407 -15.89467 -15.55086 -14.84686 -14.66939 -14.50966 -14.24380 -13.91654
-13.62413 -13.46166 -13.29321 -12.99061 -12.85037 -12.41000 -11.96432 -11.88060
-11.53272 -11.19173 -11.12379 -11.09432 -10.97062 -10.79447 -10.63487 -10.58355
-10.37057 -10.23159 -10.12750 -9.78426 -9.68911 -8.86485 -8.11080 -7.57488
-7.19179 -6.20081 -4.64304 3.12176 3.20435 3.24458 3.91341 4.12577
4.55675 4.68221 4.83485 4.85501 4.93354 5.15321 5.25692 5.32939
5.47015 5.48653 5.57057 5.64770 5.67968 5.76678 5.78552 5.86407
5.88754 5.94043 6.01902 6.03496 6.12191 6.17893 6.24245 6.28651
6.35427 6.46339 6.51265 6.56253 6.61116 6.81259 7.29083 7.33546
7.46182 7.67434 8.15728 8.37182 9.02354 9.45015 10.57783 10.76405
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.032258 B = 0.004829 C = 0.004375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 867.801316 B = 5796.944579 C = 6397.905126
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.769 5.769
2 C 0.087 3.913
3 Si 0.906 3.094
4 H -0.263 1.263
5 H -0.277 1.277
6 H -0.276 1.276
7 C -0.544 4.544
8 H 0.074 0.926
9 C 0.560 3.440
10 O -0.579 6.579
11 N -0.642 5.642
12 C 0.120 3.880
13 C -0.134 4.134
14 C -0.108 4.108
15 C 0.073 3.927
16 H 0.040 0.960
17 N -0.532 5.532
18 C 0.051 3.949
19 C -0.115 4.115
20 C -0.121 4.121
21 C -0.115 4.115
22 C 0.050 3.950
23 C 0.132 3.868
24 H 0.267 0.733
25 H 0.093 0.907
26 H 0.042 0.958
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.055 0.945
30 H 0.067 0.933
31 H 0.028 0.972
32 H 0.077 0.923
33 H 0.069 0.931
34 H 0.061 0.939
35 H 0.060 0.940
36 H 0.056 0.944
37 H 0.070 0.930
38 H 0.064 0.936
39 H 0.083 0.917
40 H 0.030 0.970
41 H 0.049 0.951
42 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.891 -14.139 -5.063 15.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.132 4.132
3 Si 0.730 3.270
4 H -0.187 1.187
5 H -0.202 1.202
6 H -0.201 1.201
7 C -0.581 4.581
8 H 0.092 0.908
9 C 0.366 3.634
10 O -0.461 6.461
11 N -0.380 5.380
12 C -0.004 4.004
13 C -0.173 4.173
14 C -0.145 4.145
15 C -0.036 4.036
16 H 0.058 0.942
17 N -0.257 5.257
18 C -0.077 4.077
19 C -0.153 4.153
20 C -0.159 4.159
21 C -0.153 4.153
22 C -0.078 4.078
23 C 0.007 3.993
24 H 0.078 0.922
25 H 0.111 0.889
26 H 0.060 0.940
27 H 0.081 0.919
28 H 0.083 0.917
29 H 0.074 0.926
30 H 0.085 0.915
31 H 0.046 0.954
32 H 0.096 0.904
33 H 0.088 0.912
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.075 0.925
37 H 0.088 0.912
38 H 0.082 0.918
39 H 0.101 0.899
40 H 0.049 0.951
41 H 0.068 0.932
42 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 4.141 -14.260 -4.567 15.536
hybrid contribution 0.328 1.186 -0.880 1.513
sum 4.469 -13.074 -5.447 14.852
Atomic orbital electron populations
1.70026 1.07075 1.27159 1.35476 1.25734 0.94600 1.00295 0.92579
0.86343 0.80527 0.81855 0.78224 1.18717 1.20211 1.20126 1.21021
0.93619 0.89224 1.54201 0.90807 1.18260 0.86880 0.82197 0.76101
1.90584 1.14524 1.86119 1.54912 1.48167 1.04787 1.05883 1.79145
1.21442 0.82521 1.01413 0.95039 1.21959 0.99223 0.95928 1.00198
1.21592 0.94088 0.97258 1.01610 1.22118 0.94519 0.87969 0.99021
0.94179 1.61933 1.05065 1.16170 1.42511 1.22138 0.99965 0.93814
0.91770 1.21573 0.95489 0.96286 1.01916 1.21582 0.95895 0.99735
0.98662 1.21578 0.99273 0.95390 0.99053 1.22152 0.87584 0.96947
1.01085 1.21181 0.98066 0.85556 0.94504 0.92175 0.88871 0.94010
0.91854 0.91748 0.92601 0.91460 0.95410 0.90423 0.91207 0.92028
0.92172 0.92516 0.91165 0.91765 0.89874 0.95128 0.93244 0.90016
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -23.06 11.84 55.55 0.66 -22.40 16
2 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16
3 Si 0.91 20.03 29.56 -169.99 -5.02 15.00 16
4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16
5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
7 C -0.54 -15.26 8.88 -35.63 -0.32 -15.58 16
8 H 0.07 1.89 5.64 -52.49 -0.30 1.59 16
9 C 0.56 16.09 7.61 -12.99 -0.10 15.99 16
10 O -0.58 -18.88 14.48 5.20 0.08 -18.81 16
11 N -0.64 -14.87 2.97 -174.17 -0.52 -15.39 16
12 C 0.12 2.27 6.34 -3.71 -0.02 2.24 16
13 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16
14 C -0.11 -1.58 4.85 -26.69 -0.13 -1.71 16
15 C 0.07 1.24 2.11 -67.37 -0.14 1.09 16
16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
17 N -0.53 -7.84 4.53 -226.28 -1.02 -8.86 16
18 C 0.05 0.63 5.13 -3.83 -0.02 0.61 16
19 C -0.11 -1.19 6.09 -26.65 -0.16 -1.36 16
20 C -0.12 -1.25 6.00 -26.61 -0.16 -1.41 16
21 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16
22 C 0.05 0.73 5.23 -3.83 -0.02 0.71 16
23 C 0.13 2.70 5.33 -3.49 -0.02 2.68 16
24 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16
25 H 0.09 1.84 5.30 -51.93 -0.28 1.56 16
26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16
30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.08 0.91 5.87 -51.93 -0.31 0.60 16
33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.08 1.35 6.14 -51.93 -0.32 1.03 16
40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
42 H 0.08 1.88 5.50 -51.93 -0.29 1.60 16
LS Contribution 316.83 15.07 4.77 4.77
Total: -1.00 -32.89 316.83 -9.42 -42.31
By element:
Atomic # 1 Polarization: 8.37 SS G_CDS: -6.85 Total: 1.51 kcal
Atomic # 6 Polarization: 3.38 SS G_CDS: -1.51 Total: 1.86 kcal
Atomic # 7 Polarization: -45.77 SS G_CDS: -0.88 Total: -46.66 kcal
Atomic # 8 Polarization: -18.88 SS G_CDS: 0.08 Total: -18.81 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -32.89 -9.42 -42.31 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364391860.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.973 kcal
(2) G-P(sol) polarization free energy of solvation -32.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds