Wall clock time and date at job start Mon Mar 30 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46926 * 300.00375 * 3 2 1 6 6 H 1.48500 * 109.46647 * 60.00316 * 3 2 1 7 7 C 1.40053 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99365 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99979 * 0.27229 * 7 2 1 10 10 O 1.21685 * 120.00167 * 354.00648 * 9 7 2 11 11 N 1.34784 * 119.99675 * 174.00677 * 9 7 2 12 12 C 1.46923 * 120.63065 * 5.27123 * 11 9 7 13 13 C 1.53188 * 108.77316 * 233.58365 * 12 11 9 14 14 C 1.53038 * 109.31320 * 305.36477 * 13 12 11 15 15 C 1.53038 * 109.53648 * 61.36783 * 14 13 12 16 16 H 1.08998 * 109.49964 * 58.58667 * 15 14 13 17 17 N 1.46907 * 109.49428 * 178.68238 * 15 14 13 18 18 C 1.46842 * 110.99811 * 304.20816 * 17 15 14 19 19 C 1.53041 * 109.52058 * 174.16528 * 18 17 15 20 20 C 1.53117 * 109.28101 * 59.17657 * 19 18 17 21 21 C 1.53115 * 109.15941 * 302.34855 * 20 19 18 22 22 C 1.46843 * 110.99512 * 180.02562 * 17 15 14 23 23 C 1.46927 * 120.62823 * 184.99032 * 11 9 7 24 24 H 0.96997 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.58831 * 353.37231 * 12 11 9 26 26 H 1.08999 * 109.58368 * 113.79729 * 12 11 9 27 27 H 1.09002 * 109.50046 * 65.32126 * 13 12 11 28 28 H 1.09006 * 109.49438 * 185.41283 * 13 12 11 29 29 H 1.09003 * 109.45968 * 181.38707 * 14 13 12 30 30 H 1.08998 * 109.46340 * 301.35549 * 14 13 12 31 31 H 1.09006 * 109.46649 * 294.17733 * 18 17 15 32 32 H 1.08997 * 109.46601 * 54.14742 * 18 17 15 33 33 H 1.09006 * 109.50268 * 299.23655 * 19 18 17 34 34 H 1.08998 * 109.53502 * 179.13983 * 19 18 17 35 35 H 1.09001 * 109.52087 * 182.43950 * 20 19 18 36 36 H 1.09006 * 109.52132 * 62.25486 * 20 19 18 37 37 H 1.08995 * 109.50316 * 297.70893 * 21 20 19 38 38 H 1.09004 * 109.53197 * 177.61571 * 21 20 19 39 39 H 1.09003 * 109.46210 * 305.85134 * 22 17 15 40 40 H 1.08998 * 109.46688 * 65.82507 * 22 17 15 41 41 H 1.09005 * 109.58645 * 246.20442 * 23 11 9 42 42 H 1.09000 * 109.58658 * 6.62424 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2750 -2.4805 -0.0071 10 8 0.0627 -2.4837 0.0979 11 7 1.9440 -3.6442 -0.1295 12 6 3.4130 -3.6656 -0.1415 13 6 3.8850 -4.4116 -1.3934 14 6 3.2360 -5.7969 -1.4320 15 6 1.7146 -5.6474 -1.5037 16 1 1.4468 -5.0742 -2.3912 17 7 1.0940 -6.9772 -1.5725 18 6 1.6258 -7.7482 -2.7035 19 6 1.0679 -9.1726 -2.6588 20 6 -0.4608 -9.1192 -2.7271 21 6 -0.9863 -8.2704 -1.5662 22 6 -0.3689 -6.8721 -1.6433 23 6 1.2179 -4.9161 -0.2474 24 1 -0.4850 0.8400 0.0004 25 1 3.7932 -2.6442 -0.1596 26 1 3.7781 -4.1779 0.7486 27 1 3.5969 -3.8499 -2.2820 28 1 4.9695 -4.5185 -1.3659 29 1 3.5893 -6.3392 -2.3090 30 1 3.5044 -6.3490 -0.5313 31 1 1.3309 -7.2719 -3.6385 32 1 2.7135 -7.7820 -2.6406 33 1 1.3741 -9.6544 -1.7301 34 1 1.4505 -9.7406 -3.5067 35 1 -0.8642 -10.1290 -2.6520 36 1 -0.7677 -8.6728 -3.6730 37 1 -0.7126 -8.7379 -0.6205 38 1 -2.0716 -8.1932 -1.6333 39 1 -0.7304 -6.2694 -0.8100 40 1 -0.6542 -6.4001 -2.5834 41 1 1.4078 -5.5283 0.6342 42 1 0.1493 -4.7201 -0.3354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364391860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:05 Heat of formation + Delta-G solvation = -41.335496 kcal Electronic energy + Delta-G solvation = -21311.582084 eV Core-core repulsion = 18290.804625 eV Total energy + Delta-G solvation = -3020.777459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.53742 -37.81833 -35.68305 -33.26043 -32.57864 -31.41282 -30.53334 -29.08763 -26.36487 -24.58877 -24.00866 -22.58005 -21.51314 -20.16034 -19.62507 -18.79561 -16.82407 -15.89467 -15.55086 -14.84686 -14.66939 -14.50966 -14.24380 -13.91654 -13.62413 -13.46166 -13.29321 -12.99061 -12.85037 -12.41000 -11.96432 -11.88060 -11.53272 -11.19173 -11.12379 -11.09432 -10.97062 -10.79447 -10.63487 -10.58355 -10.37057 -10.23159 -10.12750 -9.78426 -9.68911 -8.86485 -8.11080 -7.57488 -7.19179 -6.20081 -4.64304 3.12176 3.20435 3.24458 3.91341 4.12577 4.55675 4.68221 4.83485 4.85501 4.93354 5.15321 5.25692 5.32939 5.47015 5.48653 5.57057 5.64770 5.67968 5.76678 5.78552 5.86407 5.88754 5.94043 6.01902 6.03496 6.12191 6.17893 6.24245 6.28651 6.35427 6.46339 6.51265 6.56253 6.61116 6.81259 7.29083 7.33546 7.46182 7.67434 8.15728 8.37182 9.02354 9.45015 10.57783 10.76405 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.004829 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.801316 B = 5796.944579 C = 6397.905126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.642 5.642 12 C 0.120 3.880 13 C -0.134 4.134 14 C -0.108 4.108 15 C 0.073 3.927 16 H 0.040 0.960 17 N -0.532 5.532 18 C 0.051 3.949 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.115 4.115 22 C 0.050 3.950 23 C 0.132 3.868 24 H 0.267 0.733 25 H 0.093 0.907 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -14.139 -5.063 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.173 4.173 14 C -0.145 4.145 15 C -0.036 4.036 16 H 0.058 0.942 17 N -0.257 5.257 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.078 4.078 23 C 0.007 3.993 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.141 -14.260 -4.567 15.536 hybrid contribution 0.328 1.186 -0.880 1.513 sum 4.469 -13.074 -5.447 14.852 Atomic orbital electron populations 1.70026 1.07075 1.27159 1.35476 1.25734 0.94600 1.00295 0.92579 0.86343 0.80527 0.81855 0.78224 1.18717 1.20211 1.20126 1.21021 0.93619 0.89224 1.54201 0.90807 1.18260 0.86880 0.82197 0.76101 1.90584 1.14524 1.86119 1.54912 1.48167 1.04787 1.05883 1.79145 1.21442 0.82521 1.01413 0.95039 1.21959 0.99223 0.95928 1.00198 1.21592 0.94088 0.97258 1.01610 1.22118 0.94519 0.87969 0.99021 0.94179 1.61933 1.05065 1.16170 1.42511 1.22138 0.99965 0.93814 0.91770 1.21573 0.95489 0.96286 1.01916 1.21582 0.95895 0.99735 0.98662 1.21578 0.99273 0.95390 0.99053 1.22152 0.87584 0.96947 1.01085 1.21181 0.98066 0.85556 0.94504 0.92175 0.88871 0.94010 0.91854 0.91748 0.92601 0.91460 0.95410 0.90423 0.91207 0.92028 0.92172 0.92516 0.91165 0.91765 0.89874 0.95128 0.93244 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.84 55.55 0.66 -22.40 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 3 Si 0.91 20.03 29.56 -169.99 -5.02 15.00 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -15.26 8.88 -35.63 -0.32 -15.58 16 8 H 0.07 1.89 5.64 -52.49 -0.30 1.59 16 9 C 0.56 16.09 7.61 -12.99 -0.10 15.99 16 10 O -0.58 -18.88 14.48 5.20 0.08 -18.81 16 11 N -0.64 -14.87 2.97 -174.17 -0.52 -15.39 16 12 C 0.12 2.27 6.34 -3.71 -0.02 2.24 16 13 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 14 C -0.11 -1.58 4.85 -26.69 -0.13 -1.71 16 15 C 0.07 1.24 2.11 -67.37 -0.14 1.09 16 16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 17 N -0.53 -7.84 4.53 -226.28 -1.02 -8.86 16 18 C 0.05 0.63 5.13 -3.83 -0.02 0.61 16 19 C -0.11 -1.19 6.09 -26.65 -0.16 -1.36 16 20 C -0.12 -1.25 6.00 -26.61 -0.16 -1.41 16 21 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 22 C 0.05 0.73 5.23 -3.83 -0.02 0.71 16 23 C 0.13 2.70 5.33 -3.49 -0.02 2.68 16 24 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 25 H 0.09 1.84 5.30 -51.93 -0.28 1.56 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.91 5.87 -51.93 -0.31 0.60 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.35 6.14 -51.93 -0.32 1.03 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.88 5.50 -51.93 -0.29 1.60 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -32.89 316.83 -9.42 -42.31 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.85 Total: 1.51 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.51 Total: 1.86 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.88 Total: -46.66 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.08 Total: -18.81 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.89 -9.42 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364391860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.973 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds