Wall clock time and date at job start Mon Mar 30 2020 05:24:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86801 * 120.00004 * 2 1
4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.46926 * 300.00375 * 3 2 1
6 6 H 1.48500 * 109.46647 * 60.00316 * 3 2 1
7 7 C 1.40053 * 119.99764 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99365 * 179.97438 * 7 2 1
9 9 C 1.46371 * 119.99979 * 0.27229 * 7 2 1
10 10 O 1.21685 * 120.00167 * 354.00648 * 9 7 2
11 11 N 1.34784 * 119.99675 * 174.00677 * 9 7 2
12 12 C 1.46923 * 120.63065 * 5.27123 * 11 9 7
13 13 C 1.53188 * 108.77316 * 233.58365 * 12 11 9
14 14 C 1.53038 * 109.31320 * 305.36477 * 13 12 11
15 15 C 1.53038 * 109.53648 * 61.36783 * 14 13 12
16 16 H 1.08998 * 109.49964 * 58.58667 * 15 14 13
17 17 N 1.46907 * 109.49428 * 178.68238 * 15 14 13
18 18 C 1.46842 * 110.99811 * 304.20816 * 17 15 14
19 19 C 1.53041 * 109.52058 * 174.16528 * 18 17 15
20 20 C 1.53117 * 109.28101 * 59.17657 * 19 18 17
21 21 C 1.53115 * 109.15941 * 302.34855 * 20 19 18
22 22 C 1.46843 * 110.99512 * 180.02562 * 17 15 14
23 23 C 1.46927 * 120.62823 * 184.99032 * 11 9 7
24 24 H 0.96997 * 120.00128 * 359.97438 * 1 2 3
25 25 H 1.09000 * 109.58831 * 353.37231 * 12 11 9
26 26 H 1.08999 * 109.58368 * 113.79729 * 12 11 9
27 27 H 1.09002 * 109.50046 * 65.32126 * 13 12 11
28 28 H 1.09006 * 109.49438 * 185.41283 * 13 12 11
29 29 H 1.09003 * 109.45968 * 181.38707 * 14 13 12
30 30 H 1.08998 * 109.46340 * 301.35549 * 14 13 12
31 31 H 1.09006 * 109.46649 * 294.17733 * 18 17 15
32 32 H 1.08997 * 109.46601 * 54.14742 * 18 17 15
33 33 H 1.09006 * 109.50268 * 299.23655 * 19 18 17
34 34 H 1.08998 * 109.53502 * 179.13983 * 19 18 17
35 35 H 1.09001 * 109.52087 * 182.43950 * 20 19 18
36 36 H 1.09006 * 109.52132 * 62.25486 * 20 19 18
37 37 H 1.08995 * 109.50316 * 297.70893 * 21 20 19
38 38 H 1.09004 * 109.53197 * 177.61571 * 21 20 19
39 39 H 1.09003 * 109.46210 * 305.85134 * 22 17 15
40 40 H 1.08998 * 109.46688 * 65.82507 * 22 17 15
41 41 H 1.09005 * 109.58645 * 246.20442 * 23 11 9
42 42 H 1.09000 * 109.58658 * 6.62424 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 3.7007 1.3463 -0.0006
5 1 1.8819 2.3964 -1.2124
6 1 1.8820 2.3963 1.2126
7 6 2.0069 -1.2129 -0.0005
8 1 3.0870 -1.2128 -0.0010
9 6 1.2750 -2.4805 -0.0071
10 8 0.0627 -2.4837 0.0979
11 7 1.9440 -3.6442 -0.1295
12 6 3.4130 -3.6656 -0.1415
13 6 3.8850 -4.4116 -1.3934
14 6 3.2360 -5.7969 -1.4320
15 6 1.7146 -5.6474 -1.5037
16 1 1.4468 -5.0742 -2.3912
17 7 1.0940 -6.9772 -1.5725
18 6 1.6258 -7.7482 -2.7035
19 6 1.0679 -9.1726 -2.6588
20 6 -0.4608 -9.1192 -2.7271
21 6 -0.9863 -8.2704 -1.5662
22 6 -0.3689 -6.8721 -1.6433
23 6 1.2179 -4.9161 -0.2474
24 1 -0.4850 0.8400 0.0004
25 1 3.7932 -2.6442 -0.1596
26 1 3.7781 -4.1779 0.7486
27 1 3.5969 -3.8499 -2.2820
28 1 4.9695 -4.5185 -1.3659
29 1 3.5893 -6.3392 -2.3090
30 1 3.5044 -6.3490 -0.5313
31 1 1.3309 -7.2719 -3.6385
32 1 2.7135 -7.7820 -2.6406
33 1 1.3741 -9.6544 -1.7301
34 1 1.4505 -9.7406 -3.5067
35 1 -0.8642 -10.1290 -2.6520
36 1 -0.7677 -8.6728 -3.6730
37 1 -0.7126 -8.7379 -0.6205
38 1 -2.0716 -8.1932 -1.6333
39 1 -0.7304 -6.2694 -0.8100
40 1 -0.6542 -6.4001 -2.5834
41 1 1.4078 -5.5283 0.6342
42 1 0.1493 -4.7201 -0.3354
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000364391860.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:05
Heat of formation + Delta-G solvation = -63.882815 kcal
Electronic energy + Delta-G solvation = -21312.559809 eV
Core-core repulsion = 18290.804625 eV
Total energy + Delta-G solvation = -3021.755184 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.91589 -39.43127 -37.42599 -34.71366 -34.58994 -32.87878 -31.70055 -30.55958
-28.34682 -26.09969 -25.26304 -23.82490 -22.82409 -21.80582 -20.64724 -20.46810
-18.58015 -17.88098 -17.03499 -16.25080 -16.17263 -15.81122 -15.60564 -15.56290
-14.96124 -14.75435 -14.40953 -14.36515 -14.30829 -13.96413 -13.48308 -13.38962
-13.07326 -12.90167 -12.77423 -12.61818 -12.41097 -12.14259 -11.98490 -11.84250
-11.68070 -11.57431 -11.43176 -11.17508 -10.98472 -10.95615 -9.80378 -9.36158
-9.09731 -8.30740 -6.85282 1.38917 1.39465 1.57429 2.21955 2.43814
2.61781 3.08778 3.54742 3.72814 3.87493 3.90738 4.02868 4.09152
4.15830 4.24222 4.32224 4.36617 4.44329 4.50487 4.64126 4.71011
4.73257 4.81100 4.86971 4.94106 4.96560 5.02645 5.06600 5.08778
5.11387 5.16385 5.22102 5.29666 5.40157 5.43881 5.49848 5.75532
6.01451 6.16657 6.18080 6.40163 6.86607 7.41579 8.44976 8.66082
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.032258 B = 0.004829 C = 0.004375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 867.801316 B = 5796.944579 C = 6397.905126
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.825 5.825
2 C 0.027 3.973
3 Si 0.997 3.003
4 H -0.242 1.242
5 H -0.270 1.270
6 H -0.269 1.269
7 C -0.567 4.567
8 H 0.097 0.903
9 C 0.539 3.461
10 O -0.636 6.636
11 N -0.645 5.645
12 C 0.112 3.888
13 C -0.125 4.125
14 C -0.100 4.100
15 C 0.084 3.916
16 H 0.010 0.990
17 N -0.529 5.529
18 C 0.047 3.953
19 C -0.110 4.110
20 C -0.119 4.119
21 C -0.110 4.110
22 C 0.048 3.952
23 C 0.134 3.866
24 H 0.273 0.727
25 H 0.083 0.917
26 H 0.063 0.937
27 H 0.046 0.954
28 H 0.106 0.894
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.020 0.980
32 H 0.093 0.907
33 H 0.072 0.928
34 H 0.086 0.914
35 H 0.082 0.918
36 H 0.054 0.946
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.054 0.946
40 H 0.015 0.985
41 H 0.057 0.943
42 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.907 -15.466 -5.795 18.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.455 5.455
2 C -0.188 4.188
3 Si 0.817 3.183
4 H -0.165 1.165
5 H -0.194 1.194
6 H -0.194 1.194
7 C -0.604 4.604
8 H 0.115 0.885
9 C 0.345 3.655
10 O -0.523 6.523
11 N -0.382 5.382
12 C -0.010 4.010
13 C -0.164 4.164
14 C -0.137 4.137
15 C -0.025 4.025
16 H 0.028 0.972
17 N -0.254 5.254
18 C -0.080 4.080
19 C -0.147 4.147
20 C -0.157 4.157
21 C -0.147 4.147
22 C -0.080 4.080
23 C 0.010 3.990
24 H 0.083 0.917
25 H 0.101 0.899
26 H 0.081 0.919
27 H 0.065 0.935
28 H 0.124 0.876
29 H 0.103 0.897
30 H 0.097 0.903
31 H 0.039 0.961
32 H 0.111 0.889
33 H 0.091 0.909
34 H 0.104 0.896
35 H 0.100 0.900
36 H 0.072 0.928
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.073 0.927
40 H 0.033 0.967
41 H 0.075 0.925
42 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 7.214 -15.651 -5.311 18.033
hybrid contribution -0.649 1.522 -0.629 1.770
sum 6.565 -14.129 -5.940 16.673
Atomic orbital electron populations
1.70211 1.09683 1.28825 1.36762 1.27043 0.95495 1.05072 0.91149
0.84976 0.79593 0.75317 0.78460 1.16499 1.19450 1.19438 1.21551
0.94895 0.89597 1.54325 0.88531 1.18741 0.86555 0.84258 0.75937
1.90530 1.16894 1.87439 1.57460 1.48073 1.06903 1.05296 1.77906
1.21713 0.79534 1.01868 0.97920 1.21905 1.01630 0.95493 0.97346
1.21574 0.91426 0.97227 1.03487 1.21898 0.96713 0.88521 0.95415
0.97240 1.61993 1.04798 1.14660 1.43969 1.22308 1.00864 0.94588
0.90229 1.21576 0.95214 0.94809 1.03138 1.21591 0.96142 1.00413
0.97526 1.21555 0.99614 0.93482 1.00098 1.22147 0.88130 0.98627
0.99070 1.21189 0.95916 0.85000 0.96867 0.91676 0.89903 0.91922
0.93487 0.87596 0.89738 0.90277 0.96148 0.88921 0.90916 0.89597
0.89970 0.92755 0.90998 0.91023 0.92749 0.96653 0.92476 0.93909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -51.63 11.84 21.84 0.26 -51.37 16
2 C 0.03 1.53 5.50 85.31 0.47 2.00 16
3 Si 1.00 41.23 29.56 68.60 2.03 43.26 16
4 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16
5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16
6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16
7 C -0.57 -32.58 8.88 24.83 0.22 -32.36 16
8 H 0.10 4.91 5.64 -2.91 -0.02 4.90 16
9 C 0.54 32.56 7.61 86.36 0.66 33.22 16
10 O -0.64 -44.45 14.48 -4.30 -0.06 -44.52 16
11 N -0.65 -30.93 2.97 -823.17 -2.44 -33.37 16
12 C 0.11 4.12 6.34 86.36 0.55 4.67 16
13 C -0.12 -3.57 6.08 30.67 0.19 -3.38 16
14 C -0.10 -2.67 4.85 30.62 0.15 -2.52 16
15 C 0.08 2.88 2.11 45.13 0.10 2.98 16
16 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16
17 N -0.53 -15.42 4.53 -869.81 -3.94 -19.36 16
18 C 0.05 1.07 5.13 86.33 0.44 1.52 16
19 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16
20 C -0.12 -2.19 6.00 30.67 0.18 -2.01 16
21 C -0.11 -2.51 6.09 30.65 0.19 -2.33 16
22 C 0.05 1.48 5.23 86.33 0.45 1.93 16
23 C 0.13 5.79 5.33 86.51 0.46 6.26 16
24 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16
25 H 0.08 3.19 5.30 -2.39 -0.01 3.18 16
26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
28 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16
29 H 0.08 1.84 6.14 -2.39 -0.01 1.83 16
30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
31 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16
32 H 0.09 1.83 5.87 -2.39 -0.01 1.82 16
33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16
34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16
37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
39 H 0.05 1.95 6.14 -2.39 -0.01 1.93 16
40 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16
41 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16
42 H 0.04 2.16 5.50 -2.39 -0.01 2.15 16
Total: -1.00 -77.17 316.83 1.08 -76.09
By element:
Atomic # 1 Polarization: 20.04 SS G_CDS: 0.99 Total: 21.04 kcal
Atomic # 6 Polarization: 3.99 SS G_CDS: 4.24 Total: 8.23 kcal
Atomic # 7 Polarization: -97.98 SS G_CDS: -6.12 Total: -104.10 kcal
Atomic # 8 Polarization: -44.45 SS G_CDS: -0.06 Total: -44.52 kcal
Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal
Total: -77.17 1.08 -76.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364391860.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal
(2) G-P(sol) polarization free energy of solvation -77.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds