Wall clock time and date at job start Mon Mar 30 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48497 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46926 * 300.00375 * 3 2 1 6 6 H 1.48500 * 109.46647 * 60.00316 * 3 2 1 7 7 C 1.40053 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99365 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99979 * 0.27229 * 7 2 1 10 10 O 1.21685 * 120.00167 * 354.00648 * 9 7 2 11 11 N 1.34784 * 119.99675 * 174.00677 * 9 7 2 12 12 C 1.46923 * 120.63065 * 5.27123 * 11 9 7 13 13 C 1.53188 * 108.77316 * 233.58365 * 12 11 9 14 14 C 1.53038 * 109.31320 * 305.36477 * 13 12 11 15 15 C 1.53038 * 109.53648 * 61.36783 * 14 13 12 16 16 H 1.08998 * 109.49964 * 58.58667 * 15 14 13 17 17 N 1.46907 * 109.49428 * 178.68238 * 15 14 13 18 18 C 1.46842 * 110.99811 * 304.20816 * 17 15 14 19 19 C 1.53041 * 109.52058 * 174.16528 * 18 17 15 20 20 C 1.53117 * 109.28101 * 59.17657 * 19 18 17 21 21 C 1.53115 * 109.15941 * 302.34855 * 20 19 18 22 22 C 1.46843 * 110.99512 * 180.02562 * 17 15 14 23 23 C 1.46927 * 120.62823 * 184.99032 * 11 9 7 24 24 H 0.96997 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.58831 * 353.37231 * 12 11 9 26 26 H 1.08999 * 109.58368 * 113.79729 * 12 11 9 27 27 H 1.09002 * 109.50046 * 65.32126 * 13 12 11 28 28 H 1.09006 * 109.49438 * 185.41283 * 13 12 11 29 29 H 1.09003 * 109.45968 * 181.38707 * 14 13 12 30 30 H 1.08998 * 109.46340 * 301.35549 * 14 13 12 31 31 H 1.09006 * 109.46649 * 294.17733 * 18 17 15 32 32 H 1.08997 * 109.46601 * 54.14742 * 18 17 15 33 33 H 1.09006 * 109.50268 * 299.23655 * 19 18 17 34 34 H 1.08998 * 109.53502 * 179.13983 * 19 18 17 35 35 H 1.09001 * 109.52087 * 182.43950 * 20 19 18 36 36 H 1.09006 * 109.52132 * 62.25486 * 20 19 18 37 37 H 1.08995 * 109.50316 * 297.70893 * 21 20 19 38 38 H 1.09004 * 109.53197 * 177.61571 * 21 20 19 39 39 H 1.09003 * 109.46210 * 305.85134 * 22 17 15 40 40 H 1.08998 * 109.46688 * 65.82507 * 22 17 15 41 41 H 1.09005 * 109.58645 * 246.20442 * 23 11 9 42 42 H 1.09000 * 109.58658 * 6.62424 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2750 -2.4805 -0.0071 10 8 0.0627 -2.4837 0.0979 11 7 1.9440 -3.6442 -0.1295 12 6 3.4130 -3.6656 -0.1415 13 6 3.8850 -4.4116 -1.3934 14 6 3.2360 -5.7969 -1.4320 15 6 1.7146 -5.6474 -1.5037 16 1 1.4468 -5.0742 -2.3912 17 7 1.0940 -6.9772 -1.5725 18 6 1.6258 -7.7482 -2.7035 19 6 1.0679 -9.1726 -2.6588 20 6 -0.4608 -9.1192 -2.7271 21 6 -0.9863 -8.2704 -1.5662 22 6 -0.3689 -6.8721 -1.6433 23 6 1.2179 -4.9161 -0.2474 24 1 -0.4850 0.8400 0.0004 25 1 3.7932 -2.6442 -0.1596 26 1 3.7781 -4.1779 0.7486 27 1 3.5969 -3.8499 -2.2820 28 1 4.9695 -4.5185 -1.3659 29 1 3.5893 -6.3392 -2.3090 30 1 3.5044 -6.3490 -0.5313 31 1 1.3309 -7.2719 -3.6385 32 1 2.7135 -7.7820 -2.6406 33 1 1.3741 -9.6544 -1.7301 34 1 1.4505 -9.7406 -3.5067 35 1 -0.8642 -10.1290 -2.6520 36 1 -0.7677 -8.6728 -3.6730 37 1 -0.7126 -8.7379 -0.6205 38 1 -2.0716 -8.1932 -1.6333 39 1 -0.7304 -6.2694 -0.8100 40 1 -0.6542 -6.4001 -2.5834 41 1 1.4078 -5.5283 0.6342 42 1 0.1493 -4.7201 -0.3354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364391860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:05 Heat of formation + Delta-G solvation = -63.882815 kcal Electronic energy + Delta-G solvation = -21312.559809 eV Core-core repulsion = 18290.804625 eV Total energy + Delta-G solvation = -3021.755184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91589 -39.43127 -37.42599 -34.71366 -34.58994 -32.87878 -31.70055 -30.55958 -28.34682 -26.09969 -25.26304 -23.82490 -22.82409 -21.80582 -20.64724 -20.46810 -18.58015 -17.88098 -17.03499 -16.25080 -16.17263 -15.81122 -15.60564 -15.56290 -14.96124 -14.75435 -14.40953 -14.36515 -14.30829 -13.96413 -13.48308 -13.38962 -13.07326 -12.90167 -12.77423 -12.61818 -12.41097 -12.14259 -11.98490 -11.84250 -11.68070 -11.57431 -11.43176 -11.17508 -10.98472 -10.95615 -9.80378 -9.36158 -9.09731 -8.30740 -6.85282 1.38917 1.39465 1.57429 2.21955 2.43814 2.61781 3.08778 3.54742 3.72814 3.87493 3.90738 4.02868 4.09152 4.15830 4.24222 4.32224 4.36617 4.44329 4.50487 4.64126 4.71011 4.73257 4.81100 4.86971 4.94106 4.96560 5.02645 5.06600 5.08778 5.11387 5.16385 5.22102 5.29666 5.40157 5.43881 5.49848 5.75532 6.01451 6.16657 6.18080 6.40163 6.86607 7.41579 8.44976 8.66082 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.004829 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.801316 B = 5796.944579 C = 6397.905126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.567 4.567 8 H 0.097 0.903 9 C 0.539 3.461 10 O -0.636 6.636 11 N -0.645 5.645 12 C 0.112 3.888 13 C -0.125 4.125 14 C -0.100 4.100 15 C 0.084 3.916 16 H 0.010 0.990 17 N -0.529 5.529 18 C 0.047 3.953 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.110 4.110 22 C 0.048 3.952 23 C 0.134 3.866 24 H 0.273 0.727 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.020 0.980 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.057 0.943 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -15.466 -5.795 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.165 1.165 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.604 4.604 8 H 0.115 0.885 9 C 0.345 3.655 10 O -0.523 6.523 11 N -0.382 5.382 12 C -0.010 4.010 13 C -0.164 4.164 14 C -0.137 4.137 15 C -0.025 4.025 16 H 0.028 0.972 17 N -0.254 5.254 18 C -0.080 4.080 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.080 4.080 23 C 0.010 3.990 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.214 -15.651 -5.311 18.033 hybrid contribution -0.649 1.522 -0.629 1.770 sum 6.565 -14.129 -5.940 16.673 Atomic orbital electron populations 1.70211 1.09683 1.28825 1.36762 1.27043 0.95495 1.05072 0.91149 0.84976 0.79593 0.75317 0.78460 1.16499 1.19450 1.19438 1.21551 0.94895 0.89597 1.54325 0.88531 1.18741 0.86555 0.84258 0.75937 1.90530 1.16894 1.87439 1.57460 1.48073 1.06903 1.05296 1.77906 1.21713 0.79534 1.01868 0.97920 1.21905 1.01630 0.95493 0.97346 1.21574 0.91426 0.97227 1.03487 1.21898 0.96713 0.88521 0.95415 0.97240 1.61993 1.04798 1.14660 1.43969 1.22308 1.00864 0.94588 0.90229 1.21576 0.95214 0.94809 1.03138 1.21591 0.96142 1.00413 0.97526 1.21555 0.99614 0.93482 1.00098 1.22147 0.88130 0.98627 0.99070 1.21189 0.95916 0.85000 0.96867 0.91676 0.89903 0.91922 0.93487 0.87596 0.89738 0.90277 0.96148 0.88921 0.90916 0.89597 0.89970 0.92755 0.90998 0.91023 0.92749 0.96653 0.92476 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.63 11.84 21.84 0.26 -51.37 16 2 C 0.03 1.53 5.50 85.31 0.47 2.00 16 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 4 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.57 -32.58 8.88 24.83 0.22 -32.36 16 8 H 0.10 4.91 5.64 -2.91 -0.02 4.90 16 9 C 0.54 32.56 7.61 86.36 0.66 33.22 16 10 O -0.64 -44.45 14.48 -4.30 -0.06 -44.52 16 11 N -0.65 -30.93 2.97 -823.17 -2.44 -33.37 16 12 C 0.11 4.12 6.34 86.36 0.55 4.67 16 13 C -0.12 -3.57 6.08 30.67 0.19 -3.38 16 14 C -0.10 -2.67 4.85 30.62 0.15 -2.52 16 15 C 0.08 2.88 2.11 45.13 0.10 2.98 16 16 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 17 N -0.53 -15.42 4.53 -869.81 -3.94 -19.36 16 18 C 0.05 1.07 5.13 86.33 0.44 1.52 16 19 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 20 C -0.12 -2.19 6.00 30.67 0.18 -2.01 16 21 C -0.11 -2.51 6.09 30.65 0.19 -2.33 16 22 C 0.05 1.48 5.23 86.33 0.45 1.93 16 23 C 0.13 5.79 5.33 86.51 0.46 6.26 16 24 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 25 H 0.08 3.19 5.30 -2.39 -0.01 3.18 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.08 1.84 6.14 -2.39 -0.01 1.83 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.09 1.83 5.87 -2.39 -0.01 1.82 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.95 6.14 -2.39 -0.01 1.93 16 40 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.04 2.16 5.50 -2.39 -0.01 2.15 16 Total: -1.00 -77.17 316.83 1.08 -76.09 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.99 Total: 21.04 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.24 Total: 8.23 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -6.12 Total: -104.10 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.06 Total: -44.52 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -77.17 1.08 -76.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364391860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds