Wall clock time and date at job start Mon Mar 30 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99701 * 2 1 4 4 H 1.48508 * 109.46982 * 239.99524 * 3 2 1 5 5 H 1.48497 * 109.47507 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46838 * 119.99831 * 3 2 1 7 7 C 1.40047 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00221 * 354.99580 * 9 7 2 11 11 N 1.34773 * 119.99940 * 175.26919 * 9 7 2 12 12 C 1.46931 * 120.63188 * 4.95884 * 11 9 7 13 13 C 1.53188 * 108.77520 * 126.36655 * 12 11 9 14 14 C 1.53040 * 109.31055 * 54.64075 * 13 12 11 15 15 C 1.53042 * 109.53808 * 298.63138 * 14 13 12 16 16 H 1.09008 * 109.49731 * 301.37928 * 15 14 13 17 17 N 1.46902 * 109.49684 * 181.32017 * 15 14 13 18 18 C 1.46848 * 110.99657 * 299.20739 * 17 15 14 19 19 C 1.53036 * 109.51717 * 174.16242 * 18 17 15 20 20 C 1.53123 * 109.27968 * 59.18161 * 19 18 17 21 21 C 1.53116 * 109.16112 * 302.34123 * 20 19 18 22 22 C 1.46852 * 110.99508 * 174.99919 * 17 15 14 23 23 C 1.46929 * 120.63400 * 184.68117 * 11 9 7 24 24 H 0.97000 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.58760 * 246.16007 * 12 11 9 26 26 H 1.08997 * 109.58338 * 6.58265 * 12 11 9 27 27 H 1.08998 * 109.49886 * 174.59060 * 13 12 11 28 28 H 1.08994 * 109.50076 * 294.65315 * 13 12 11 29 29 H 1.08998 * 109.46557 * 58.65667 * 14 13 12 30 30 H 1.09005 * 109.45873 * 178.62937 * 14 13 12 31 31 H 1.08998 * 109.46296 * 294.17900 * 18 17 15 32 32 H 1.08999 * 109.46361 * 54.15210 * 18 17 15 33 33 H 1.09004 * 109.50973 * 299.23803 * 19 18 17 34 34 H 1.09005 * 109.50328 * 179.12133 * 19 18 17 35 35 H 1.09008 * 109.52079 * 182.43337 * 20 19 18 36 36 H 1.08999 * 109.52378 * 62.24998 * 20 19 18 37 37 H 1.08999 * 109.50348 * 297.71220 * 21 20 19 38 38 H 1.08999 * 109.50424 * 177.59560 * 21 20 19 39 39 H 1.08996 * 109.46775 * 305.85046 * 22 17 15 40 40 H 1.09007 * 109.46304 * 65.82635 * 22 17 15 41 41 H 1.09002 * 109.58071 * 353.41822 * 23 11 9 42 42 H 1.08995 * 109.58894 * 113.84288 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0616 -2.4824 0.0920 11 7 1.9456 -3.6456 -0.0952 12 6 3.4147 -3.6666 -0.0911 13 6 3.8911 -4.6287 1.0016 14 6 3.2436 -5.9987 0.7870 15 6 1.7223 -5.8674 0.8887 16 1 1.4562 -5.4676 1.8673 17 7 1.1034 -7.1882 0.7141 18 6 1.4245 -7.7495 -0.6044 19 6 0.8881 -9.1799 -0.6955 20 6 -0.6281 -9.1659 -0.4815 21 6 -0.9379 -8.5324 0.8776 22 6 -0.3486 -7.1208 0.9232 23 6 1.2213 -4.9198 -0.1995 24 1 -0.4850 0.8400 -0.0004 25 1 3.7780 -4.0062 -1.0610 26 1 3.7938 -2.6652 0.1131 27 1 4.9755 -4.7271 0.9523 28 1 3.6052 -4.2397 1.9788 29 1 3.5104 -6.3759 -0.2003 30 1 3.5998 -6.6920 1.5490 31 1 0.9642 -7.1388 -1.3810 32 1 2.5057 -7.7577 -0.7421 33 1 1.3583 -9.7946 0.0721 34 1 1.1129 -9.5908 -1.6798 35 1 -1.0084 -10.1872 -0.5027 36 1 -1.1021 -8.5834 -1.2715 37 1 -0.4965 -9.1369 1.6699 38 1 -2.0177 -8.4807 1.0173 39 1 -0.5551 -6.6723 1.8949 40 1 -0.8006 -6.5130 0.1393 41 1 0.1536 -4.7450 -0.0668 42 1 1.4021 -5.3638 -1.1784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364391862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:09 Heat of formation + Delta-G solvation = -41.897853 kcal Electronic energy + Delta-G solvation = -21441.826718 eV Core-core repulsion = 18421.024873 eV Total energy + Delta-G solvation = -3020.801845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73992 -37.74160 -35.68719 -33.26677 -32.58107 -31.25352 -30.67480 -28.90592 -26.41058 -24.33085 -24.09024 -23.03274 -21.71379 -20.15167 -19.67446 -18.40072 -16.74631 -15.81426 -15.64013 -14.92191 -14.67390 -14.44900 -14.36253 -13.90676 -13.63537 -13.57132 -13.20141 -12.91180 -12.73718 -12.33935 -12.11055 -11.86529 -11.64320 -11.20501 -11.19417 -11.02229 -10.97595 -10.75729 -10.61015 -10.55738 -10.28960 -10.23937 -10.13758 -9.92157 -9.75537 -8.86773 -8.20585 -7.59081 -7.11143 -6.20718 -4.65778 3.14367 3.19418 3.20983 3.98549 4.11515 4.53565 4.64375 4.85259 4.88449 4.95867 5.15303 5.29611 5.37002 5.47754 5.49888 5.56807 5.62946 5.68853 5.76296 5.78693 5.90263 5.92395 5.94394 5.99924 6.05620 6.14532 6.16752 6.24971 6.25954 6.38900 6.39242 6.47784 6.53812 6.62660 6.78661 7.27592 7.33308 7.44492 7.64259 8.13165 8.34760 9.00858 9.43167 10.56587 10.75103 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.004967 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.321763 B = 5635.294502 C = 6214.766851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.639 5.639 12 C 0.121 3.879 13 C -0.134 4.134 14 C -0.105 4.105 15 C 0.071 3.929 16 H 0.082 0.918 17 N -0.529 5.529 18 C 0.046 3.954 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.114 4.114 22 C 0.051 3.949 23 C 0.094 3.906 24 H 0.269 0.731 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -14.371 0.085 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.377 5.377 12 C -0.004 4.004 13 C -0.174 4.174 14 C -0.142 4.142 15 C -0.038 4.038 16 H 0.100 0.900 17 N -0.253 5.253 18 C -0.081 4.081 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.077 4.077 23 C -0.032 4.032 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.986 -14.564 0.488 15.108 hybrid contribution 0.188 1.319 -0.652 1.483 sum 4.175 -13.245 -0.164 13.889 Atomic orbital electron populations 1.70007 1.07084 1.27398 1.35220 1.25731 0.94608 1.00291 0.92571 0.86453 0.79864 0.81098 0.79478 1.19257 1.20547 1.19206 1.20947 0.93551 0.89231 1.54370 0.90919 1.18259 0.86905 0.82238 0.76083 1.90584 1.14441 1.86125 1.55057 1.48125 1.04713 1.05355 1.79548 1.21436 0.82447 1.00365 0.96118 1.21957 0.99267 0.95519 1.00615 1.21529 0.94115 0.97184 1.01420 1.22048 0.94578 0.87198 0.99978 0.89972 1.62252 1.10371 1.23181 1.29482 1.22172 1.00788 0.94915 0.90272 1.21578 0.95697 0.96709 1.01273 1.21583 0.96325 1.00392 0.97646 1.21570 0.99863 0.96214 0.97569 1.22095 0.87666 0.96490 1.01474 1.21688 0.98942 0.85999 0.96568 0.92047 0.94204 0.88925 0.91716 0.91677 0.92322 0.91866 0.94491 0.90581 0.91393 0.91985 0.92209 0.92296 0.91398 0.91814 0.90797 0.94270 0.90023 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.84 55.55 0.66 -22.42 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.02 29.56 -169.99 -5.02 15.00 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.28 8.86 -35.63 -0.32 -15.59 16 8 H 0.07 1.85 5.68 -52.49 -0.30 1.55 16 9 C 0.56 16.07 7.62 -12.99 -0.10 15.97 16 10 O -0.58 -18.92 14.45 5.20 0.08 -18.84 16 11 N -0.64 -14.75 2.98 -174.70 -0.52 -15.27 16 12 C 0.12 2.26 6.32 -3.71 -0.02 2.24 16 13 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 14 C -0.10 -1.52 4.93 -26.69 -0.13 -1.65 16 15 C 0.07 1.19 2.37 -67.82 -0.16 1.03 16 16 H 0.08 1.53 8.08 -51.92 -0.42 1.11 16 17 N -0.53 -7.70 4.64 -226.80 -1.05 -8.76 16 18 C 0.05 0.60 4.64 -3.83 -0.02 0.59 16 19 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 20 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 21 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 22 C 0.05 0.73 5.03 -3.83 -0.02 0.71 16 23 C 0.09 1.90 5.01 -3.93 -0.02 1.88 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.82 5.37 -51.93 -0.28 1.54 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.53 6.51 -51.93 -0.34 0.19 16 32 H 0.08 0.95 6.06 -51.93 -0.31 0.64 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.04 0.63 6.87 -51.93 -0.36 0.27 16 41 H 0.08 1.90 5.80 -51.93 -0.30 1.60 16 42 H 0.04 0.77 6.24 -51.93 -0.32 0.45 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -32.86 314.10 -9.40 -42.26 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.74 Total: 2.35 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.53 Total: 0.95 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.92 Total: -46.44 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.84 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.86 -9.40 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364391862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.362 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds