Wall clock time and date at job start Mon Mar 30 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99701 * 2 1 4 4 H 1.48508 * 109.46982 * 239.99524 * 3 2 1 5 5 H 1.48497 * 109.47507 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46838 * 119.99831 * 3 2 1 7 7 C 1.40047 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00221 * 354.99580 * 9 7 2 11 11 N 1.34773 * 119.99940 * 175.26919 * 9 7 2 12 12 C 1.46931 * 120.63188 * 4.95884 * 11 9 7 13 13 C 1.53188 * 108.77520 * 126.36655 * 12 11 9 14 14 C 1.53040 * 109.31055 * 54.64075 * 13 12 11 15 15 C 1.53042 * 109.53808 * 298.63138 * 14 13 12 16 16 H 1.09008 * 109.49731 * 301.37928 * 15 14 13 17 17 N 1.46902 * 109.49684 * 181.32017 * 15 14 13 18 18 C 1.46848 * 110.99657 * 299.20739 * 17 15 14 19 19 C 1.53036 * 109.51717 * 174.16242 * 18 17 15 20 20 C 1.53123 * 109.27968 * 59.18161 * 19 18 17 21 21 C 1.53116 * 109.16112 * 302.34123 * 20 19 18 22 22 C 1.46852 * 110.99508 * 174.99919 * 17 15 14 23 23 C 1.46929 * 120.63400 * 184.68117 * 11 9 7 24 24 H 0.97000 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.58760 * 246.16007 * 12 11 9 26 26 H 1.08997 * 109.58338 * 6.58265 * 12 11 9 27 27 H 1.08998 * 109.49886 * 174.59060 * 13 12 11 28 28 H 1.08994 * 109.50076 * 294.65315 * 13 12 11 29 29 H 1.08998 * 109.46557 * 58.65667 * 14 13 12 30 30 H 1.09005 * 109.45873 * 178.62937 * 14 13 12 31 31 H 1.08998 * 109.46296 * 294.17900 * 18 17 15 32 32 H 1.08999 * 109.46361 * 54.15210 * 18 17 15 33 33 H 1.09004 * 109.50973 * 299.23803 * 19 18 17 34 34 H 1.09005 * 109.50328 * 179.12133 * 19 18 17 35 35 H 1.09008 * 109.52079 * 182.43337 * 20 19 18 36 36 H 1.08999 * 109.52378 * 62.24998 * 20 19 18 37 37 H 1.08999 * 109.50348 * 297.71220 * 21 20 19 38 38 H 1.08999 * 109.50424 * 177.59560 * 21 20 19 39 39 H 1.08996 * 109.46775 * 305.85046 * 22 17 15 40 40 H 1.09007 * 109.46304 * 65.82635 * 22 17 15 41 41 H 1.09002 * 109.58071 * 353.41822 * 23 11 9 42 42 H 1.08995 * 109.58894 * 113.84288 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0616 -2.4824 0.0920 11 7 1.9456 -3.6456 -0.0952 12 6 3.4147 -3.6666 -0.0911 13 6 3.8911 -4.6287 1.0016 14 6 3.2436 -5.9987 0.7870 15 6 1.7223 -5.8674 0.8887 16 1 1.4562 -5.4676 1.8673 17 7 1.1034 -7.1882 0.7141 18 6 1.4245 -7.7495 -0.6044 19 6 0.8881 -9.1799 -0.6955 20 6 -0.6281 -9.1659 -0.4815 21 6 -0.9379 -8.5324 0.8776 22 6 -0.3486 -7.1208 0.9232 23 6 1.2213 -4.9198 -0.1995 24 1 -0.4850 0.8400 -0.0004 25 1 3.7780 -4.0062 -1.0610 26 1 3.7938 -2.6652 0.1131 27 1 4.9755 -4.7271 0.9523 28 1 3.6052 -4.2397 1.9788 29 1 3.5104 -6.3759 -0.2003 30 1 3.5998 -6.6920 1.5490 31 1 0.9642 -7.1388 -1.3810 32 1 2.5057 -7.7577 -0.7421 33 1 1.3583 -9.7946 0.0721 34 1 1.1129 -9.5908 -1.6798 35 1 -1.0084 -10.1872 -0.5027 36 1 -1.1021 -8.5834 -1.2715 37 1 -0.4965 -9.1369 1.6699 38 1 -2.0177 -8.4807 1.0173 39 1 -0.5551 -6.6723 1.8949 40 1 -0.8006 -6.5130 0.1393 41 1 0.1536 -4.7450 -0.0668 42 1 1.4021 -5.3638 -1.1784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364391862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:08 Heat of formation + Delta-G solvation = -64.627909 kcal Electronic energy + Delta-G solvation = -21442.812367 eV Core-core repulsion = 18421.024873 eV Total energy + Delta-G solvation = -3021.787494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12283 -39.38315 -37.40733 -34.71510 -34.60777 -32.80104 -31.76078 -30.38741 -28.37541 -25.92196 -25.41355 -24.13442 -23.01816 -21.84007 -20.96044 -19.82095 -18.52655 -17.84496 -17.01317 -16.39439 -16.23483 -15.95034 -15.55407 -15.33378 -14.99278 -14.92169 -14.61585 -14.25074 -14.07620 -13.84749 -13.58878 -13.51918 -13.06428 -13.00163 -12.73029 -12.63032 -12.37582 -12.11860 -12.01875 -11.82680 -11.65296 -11.55159 -11.46114 -11.24833 -11.01550 -10.93556 -9.85470 -9.61096 -8.87909 -8.31079 -6.86544 1.38413 1.42184 1.53834 2.21971 2.43140 2.68006 3.02075 3.53556 3.75347 3.85657 3.90870 3.99203 4.10147 4.16874 4.23665 4.28281 4.31950 4.43557 4.54251 4.60466 4.70744 4.72323 4.84941 4.85655 4.91506 4.92987 5.02557 5.07097 5.10495 5.12510 5.21870 5.23094 5.29196 5.38713 5.44700 5.48598 5.73972 5.99144 6.13991 6.15089 6.39190 6.85235 7.39915 8.43708 8.64883 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.004967 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.321763 B = 5635.294502 C = 6214.766851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.538 3.462 10 O -0.637 6.637 11 N -0.643 5.643 12 C 0.113 3.887 13 C -0.125 4.125 14 C -0.096 4.096 15 C 0.081 3.919 16 H 0.055 0.945 17 N -0.519 5.519 18 C 0.043 3.957 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.108 4.108 22 C 0.048 3.952 23 C 0.099 3.901 24 H 0.274 0.726 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.011 0.989 41 H 0.038 0.962 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -15.726 -0.090 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.605 4.605 8 H 0.114 0.886 9 C 0.344 3.656 10 O -0.524 6.524 11 N -0.380 5.380 12 C -0.010 4.010 13 C -0.164 4.164 14 C -0.134 4.134 15 C -0.029 4.029 16 H 0.074 0.926 17 N -0.243 5.243 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.145 4.145 22 C -0.080 4.080 23 C -0.026 4.026 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.056 0.944 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.033 -15.984 0.308 17.465 hybrid contribution -0.778 1.668 -0.626 1.944 sum 6.255 -14.316 -0.318 15.626 Atomic orbital electron populations 1.70202 1.09696 1.28965 1.36578 1.27049 0.95493 1.05090 0.91116 0.85076 0.78225 0.74574 0.80473 1.17557 1.20078 1.17599 1.21494 0.94882 0.89616 1.54478 0.88558 1.18744 0.86575 0.84330 0.75928 1.90530 1.16840 1.87463 1.57610 1.48040 1.06846 1.04830 1.78262 1.21708 0.79432 1.01162 0.98653 1.21905 1.01634 0.94696 0.98173 1.21503 0.91464 0.97257 1.03130 1.21891 0.96771 0.87322 0.96905 0.92646 1.62364 1.10054 1.21235 1.30619 1.22317 1.01622 0.96088 0.88457 1.21573 0.95404 0.94919 1.02765 1.21607 0.96556 1.01395 0.96393 1.21545 1.00234 0.94015 0.98747 1.22132 0.87938 0.98270 0.99683 1.21730 0.96455 0.85788 0.98632 0.91658 0.92115 0.89973 0.87613 0.93246 0.90675 0.89593 0.96436 0.89195 0.90435 0.90024 0.89814 0.93387 0.90413 0.91002 0.92240 0.97074 0.94380 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.65 11.84 21.84 0.26 -51.40 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.15 29.56 68.60 2.03 43.18 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.57 -32.63 8.86 24.83 0.22 -32.41 16 8 H 0.10 4.88 5.68 -2.91 -0.02 4.86 16 9 C 0.54 32.49 7.62 86.36 0.66 33.15 16 10 O -0.64 -44.59 14.45 -4.32 -0.06 -44.65 16 11 N -0.64 -30.66 2.98 -824.84 -2.46 -33.11 16 12 C 0.11 4.11 6.32 86.36 0.55 4.66 16 13 C -0.13 -3.53 6.08 30.67 0.19 -3.34 16 14 C -0.10 -2.54 4.93 30.62 0.15 -2.38 16 15 C 0.08 2.73 2.37 44.85 0.11 2.83 16 16 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 17 N -0.52 -14.92 4.64 -871.47 -4.05 -18.97 16 18 C 0.04 1.04 4.64 86.33 0.40 1.44 16 19 C -0.11 -2.05 6.09 30.65 0.19 -1.86 16 20 C -0.12 -2.38 6.00 30.67 0.18 -2.19 16 21 C -0.11 -2.40 6.09 30.65 0.19 -2.21 16 22 C 0.05 1.44 5.03 86.33 0.43 1.88 16 23 C 0.10 4.22 5.01 86.22 0.43 4.66 16 24 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 3.14 5.37 -2.39 -0.01 3.13 16 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.79 6.37 -2.39 -0.02 1.77 16 30 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.02 0.50 6.51 -2.39 -0.02 0.48 16 32 H 0.09 1.96 6.06 -2.39 -0.01 1.95 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 40 H 0.01 0.39 6.87 -2.38 -0.02 0.37 16 41 H 0.04 1.93 5.80 -2.39 -0.01 1.92 16 42 H 0.05 2.01 6.24 -2.39 -0.01 1.99 16 Total: -1.00 -77.11 314.10 0.88 -76.23 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.00 Total: 22.50 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 4.16 Total: 6.22 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -6.25 Total: -103.48 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.06 Total: -44.65 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -77.11 0.88 -76.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364391862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.601 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds