Wall clock time and date at job start Mon Mar 30 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47356 * 299.99835 * 3 2 1 6 6 H 1.48500 * 109.47141 * 60.00085 * 3 2 1 7 7 C 1.37883 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99883 * 90.00019 * 10 9 7 12 12 O 1.21285 * 120.00176 * 185.93355 * 11 10 9 13 13 C 1.50699 * 120.00024 * 5.93728 * 11 10 9 14 14 C 1.52999 * 109.47251 * 175.02053 * 13 11 10 15 15 C 1.53001 * 109.47297 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.87632 * 305.69824 * 15 14 13 17 17 C 1.54313 * 109.89007 * 184.66878 * 15 14 13 18 18 C 1.55397 * 102.89901 * 218.40883 * 17 15 14 19 19 C 1.54902 * 101.74323 * 35.48125 * 18 17 15 20 20 N 1.47442 * 109.88796 * 66.72882 * 15 14 13 21 21 C 1.46507 * 120.00193 * 270.00477 * 10 9 7 22 22 C 1.52998 * 117.49560 * 196.47518 * 21 10 9 23 23 C 1.52993 * 117.50051 * 127.81483 * 21 10 9 24 24 H 0.97001 * 119.99628 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46806 * 60.00306 * 9 7 2 26 26 H 1.08994 * 109.47316 * 300.00067 * 9 7 2 27 27 H 1.08999 * 109.47243 * 55.01742 * 13 11 10 28 28 H 1.09004 * 109.46963 * 295.01410 * 13 11 10 29 29 H 1.08999 * 109.47251 * 59.99694 * 14 13 11 30 30 H 1.09005 * 109.47093 * 300.00172 * 14 13 11 31 31 H 1.09002 * 110.70515 * 336.69078 * 17 15 14 32 32 H 1.09001 * 110.70923 * 99.92352 * 17 15 14 33 33 H 1.09003 * 110.87058 * 277.38756 * 18 17 15 34 34 H 1.09000 * 111.05608 * 153.65241 * 18 17 15 35 35 H 1.09002 * 110.36955 * 204.19180 * 19 18 17 36 36 H 1.08995 * 110.47162 * 81.89660 * 19 18 17 37 37 H 1.00903 * 111.00115 * 240.68341 * 20 15 14 38 38 H 1.08993 * 115.54344 * 342.13828 * 21 10 9 39 39 H 1.09000 * 117.50199 * 359.97438 * 22 21 10 40 40 H 1.08998 * 117.49529 * 145.02275 * 22 21 10 41 41 H 1.09001 * 117.50042 * 214.98146 * 23 21 10 42 42 H 1.09001 * 117.49917 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6408 -4.1250 1.1667 12 8 3.5083 -4.9726 1.1696 13 6 2.0525 -3.6445 2.4683 14 6 2.6291 -4.4665 3.6228 15 6 2.0322 -3.9783 4.9443 16 1 2.1884 -2.9045 5.0472 17 6 2.6933 -4.7205 6.1248 18 6 1.5056 -4.9470 7.1009 19 6 0.3336 -5.1958 6.1191 20 7 0.5900 -4.2817 4.9857 21 6 2.6791 -4.1695 -1.2693 22 6 3.3484 -5.5447 -1.2303 23 6 4.1917 -4.2890 -1.4650 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 0.9693 -3.7633 2.4432 28 1 2.2996 -2.5927 2.6124 29 1 3.7123 -4.3478 3.6479 30 1 2.3821 -5.5184 3.4787 31 1 3.1090 -5.6732 5.7968 32 1 3.4626 -4.1018 6.5868 33 1 1.3258 -4.0586 7.7065 34 1 1.6781 -5.8188 7.7320 35 1 -0.6172 -4.9540 6.5941 36 1 0.3345 -6.2314 5.7791 37 1 0.0450 -3.4369 5.0721 38 1 2.0758 -3.9280 -2.1443 39 1 3.4349 -6.0351 -0.2607 40 1 3.1860 -6.2077 -2.0800 41 1 4.5838 -4.1264 -2.4689 42 1 4.8328 -3.9530 -0.6499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383655257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:37 Heat of formation + Delta-G solvation = -11.957652 kcal Electronic energy + Delta-G solvation = -20823.076330 eV Core-core repulsion = 17803.572790 eV Total energy + Delta-G solvation = -3019.503540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57761 -38.55547 -35.77809 -34.16662 -32.61206 -32.00846 -30.02161 -28.09324 -26.98197 -24.06127 -22.79044 -21.74927 -21.69234 -20.98256 -19.62831 -18.09543 -16.96039 -16.61837 -16.01632 -15.45098 -15.09206 -14.70214 -14.43288 -13.92071 -13.48812 -13.37302 -13.09228 -12.76880 -12.40934 -12.19091 -12.08051 -11.61753 -11.50541 -11.34700 -11.16297 -11.01197 -10.89466 -10.69883 -10.63223 -10.51095 -10.43798 -10.26529 -10.20028 -9.63282 -9.51283 -8.64217 -8.46673 -8.39045 -7.42233 -6.15495 -4.22350 3.22262 3.30847 3.35126 3.45605 3.93796 4.24304 4.35178 4.64292 4.66465 4.74547 5.00258 5.16848 5.26598 5.36295 5.43014 5.54340 5.58364 5.63570 5.71855 5.75396 5.78524 5.87865 5.92053 6.01305 6.12903 6.22925 6.26326 6.31580 6.41055 6.58381 6.63831 6.78234 6.89364 6.99017 7.02041 7.23413 7.49266 7.69675 7.81160 8.09644 8.42264 8.84535 9.12708 9.45216 10.90826 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.006219 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.009763 B = 4501.532637 C = 5950.214823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.239 3.761 10 N -0.571 5.571 11 C 0.518 3.482 12 O -0.572 6.572 13 C -0.129 4.129 14 C -0.082 4.082 15 C 0.076 3.924 16 H 0.063 0.937 17 C -0.136 4.136 18 C -0.155 4.155 19 C 0.049 3.951 20 N -0.679 5.679 21 C 0.089 3.911 22 C -0.203 4.203 23 C -0.189 4.189 24 H 0.264 0.736 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -7.732 9.173 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.119 3.881 10 N -0.299 5.299 11 C 0.308 3.692 12 O -0.454 6.454 13 C -0.168 4.168 14 C -0.121 4.121 15 C -0.034 4.034 16 H 0.081 0.919 17 C -0.174 4.174 18 C -0.194 4.194 19 C -0.081 4.081 20 N -0.308 5.308 21 C -0.017 4.017 22 C -0.241 4.241 23 C -0.227 4.227 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.690 -8.506 8.649 12.248 hybrid contribution 0.439 1.863 0.567 1.996 sum 2.129 -6.643 9.216 11.559 Atomic orbital electron populations 1.69941 1.05946 1.27085 1.50113 1.24934 0.94838 0.99199 0.94892 0.86480 0.80189 0.83349 0.77705 1.19697 1.20868 1.20882 1.21545 0.93658 0.90448 1.51469 0.92093 1.19456 0.87414 0.82385 0.98814 1.47687 1.44880 1.34077 1.03214 1.20683 0.81762 0.80936 0.85825 1.90415 1.32742 1.34687 1.87594 1.21553 1.02279 1.01521 0.91466 1.21315 0.99032 0.99964 0.91755 1.22246 0.87473 0.98609 0.95056 0.91926 1.22871 0.97630 1.01281 0.95625 1.23192 0.96425 1.01631 0.98185 1.22847 0.97039 0.98501 0.89680 1.61562 1.06253 1.18935 1.44048 1.21480 0.93845 0.97789 0.88554 1.23796 1.04149 0.91420 1.04700 1.23098 0.95183 1.02835 1.01628 0.92646 0.94792 0.93853 0.88620 0.88793 0.91739 0.91537 0.90779 0.91210 0.91705 0.91081 0.91814 0.90741 0.84330 0.86222 0.84830 0.90392 0.89689 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 2 C 0.06 1.70 5.46 -17.81 -0.10 1.60 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.04 9.39 -34.44 -0.32 -14.36 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.77 5.10 -5.19 -0.03 5.74 16 10 N -0.57 -12.47 2.82 -167.48 -0.47 -12.95 16 11 C 0.52 10.94 7.46 -10.98 -0.08 10.86 16 12 O -0.57 -12.58 11.73 5.55 0.07 -12.51 16 13 C -0.13 -2.37 4.15 -27.88 -0.12 -2.48 16 14 C -0.08 -1.30 4.06 -26.73 -0.11 -1.40 16 15 C 0.08 1.00 3.33 -66.73 -0.22 0.77 16 16 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.14 -1.50 6.49 -24.77 -0.16 -1.66 16 18 C -0.16 -1.48 7.08 -24.46 -0.17 -1.66 16 19 C 0.05 0.51 7.58 -2.30 -0.02 0.50 16 20 N -0.68 -8.67 6.58 -103.82 -0.68 -9.35 16 21 C 0.09 1.77 6.62 -67.93 -0.45 1.32 16 22 C -0.20 -3.68 9.63 -26.70 -0.26 -3.93 16 23 C -0.19 -3.53 9.88 -26.70 -0.26 -3.79 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 25 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 26 H 0.04 1.06 6.31 -51.93 -0.33 0.74 16 27 H 0.10 1.78 7.04 -51.93 -0.37 1.41 16 28 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 29 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.34 4.09 8.91 -39.29 -0.35 3.74 16 38 H 0.12 2.23 8.09 -51.93 -0.42 1.81 16 39 H 0.13 2.70 5.22 -52.10 -0.27 2.42 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.91 7.59 -51.93 -0.39 1.52 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -28.36 336.13 -9.75 -38.11 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.14 Total: 8.30 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.30 Total: -8.49 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.42 Total: -46.17 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.36 -9.75 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383655257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.156 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds