Wall clock time and date at job start Mon Mar 30 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47356 * 299.99835 * 3 2 1 6 6 H 1.48500 * 109.47141 * 60.00085 * 3 2 1 7 7 C 1.37883 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99883 * 90.00019 * 10 9 7 12 12 O 1.21285 * 120.00176 * 185.93355 * 11 10 9 13 13 C 1.50699 * 120.00024 * 5.93728 * 11 10 9 14 14 C 1.52999 * 109.47251 * 175.02053 * 13 11 10 15 15 C 1.53001 * 109.47297 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.87632 * 305.69824 * 15 14 13 17 17 C 1.54313 * 109.89007 * 184.66878 * 15 14 13 18 18 C 1.55397 * 102.89901 * 218.40883 * 17 15 14 19 19 C 1.54902 * 101.74323 * 35.48125 * 18 17 15 20 20 N 1.47442 * 109.88796 * 66.72882 * 15 14 13 21 21 C 1.46507 * 120.00193 * 270.00477 * 10 9 7 22 22 C 1.52998 * 117.49560 * 196.47518 * 21 10 9 23 23 C 1.52993 * 117.50051 * 127.81483 * 21 10 9 24 24 H 0.97001 * 119.99628 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46806 * 60.00306 * 9 7 2 26 26 H 1.08994 * 109.47316 * 300.00067 * 9 7 2 27 27 H 1.08999 * 109.47243 * 55.01742 * 13 11 10 28 28 H 1.09004 * 109.46963 * 295.01410 * 13 11 10 29 29 H 1.08999 * 109.47251 * 59.99694 * 14 13 11 30 30 H 1.09005 * 109.47093 * 300.00172 * 14 13 11 31 31 H 1.09002 * 110.70515 * 336.69078 * 17 15 14 32 32 H 1.09001 * 110.70923 * 99.92352 * 17 15 14 33 33 H 1.09003 * 110.87058 * 277.38756 * 18 17 15 34 34 H 1.09000 * 111.05608 * 153.65241 * 18 17 15 35 35 H 1.09002 * 110.36955 * 204.19180 * 19 18 17 36 36 H 1.08995 * 110.47162 * 81.89660 * 19 18 17 37 37 H 1.00903 * 111.00115 * 240.68341 * 20 15 14 38 38 H 1.08993 * 115.54344 * 342.13828 * 21 10 9 39 39 H 1.09000 * 117.50199 * 359.97438 * 22 21 10 40 40 H 1.08998 * 117.49529 * 145.02275 * 22 21 10 41 41 H 1.09001 * 117.50042 * 214.98146 * 23 21 10 42 42 H 1.09001 * 117.49917 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6408 -4.1250 1.1667 12 8 3.5083 -4.9726 1.1696 13 6 2.0525 -3.6445 2.4683 14 6 2.6291 -4.4665 3.6228 15 6 2.0322 -3.9783 4.9443 16 1 2.1884 -2.9045 5.0472 17 6 2.6933 -4.7205 6.1248 18 6 1.5056 -4.9470 7.1009 19 6 0.3336 -5.1958 6.1191 20 7 0.5900 -4.2817 4.9857 21 6 2.6791 -4.1695 -1.2693 22 6 3.3484 -5.5447 -1.2303 23 6 4.1917 -4.2890 -1.4650 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 0.9693 -3.7633 2.4432 28 1 2.2996 -2.5927 2.6124 29 1 3.7123 -4.3478 3.6479 30 1 2.3821 -5.5184 3.4787 31 1 3.1090 -5.6732 5.7968 32 1 3.4626 -4.1018 6.5868 33 1 1.3258 -4.0586 7.7065 34 1 1.6781 -5.8188 7.7320 35 1 -0.6172 -4.9540 6.5941 36 1 0.3345 -6.2314 5.7791 37 1 0.0450 -3.4369 5.0721 38 1 2.0758 -3.9280 -2.1443 39 1 3.4349 -6.0351 -0.2607 40 1 3.1860 -6.2077 -2.0800 41 1 4.5838 -4.1264 -2.4689 42 1 4.8328 -3.9530 -0.6499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383655257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:37 Heat of formation + Delta-G solvation = -28.222169 kcal Electronic energy + Delta-G solvation = -20823.781612 eV Core-core repulsion = 17803.572790 eV Total energy + Delta-G solvation = -3020.208823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21072 -39.57045 -37.37203 -35.98609 -34.24370 -33.63190 -30.92837 -29.32876 -28.89854 -25.42306 -24.72392 -23.23013 -23.06353 -21.92805 -20.74970 -19.75456 -18.66848 -17.91528 -17.74453 -17.00999 -16.42441 -16.23896 -16.10840 -15.34777 -14.78871 -14.55693 -14.34663 -14.22918 -13.96990 -13.86386 -13.49598 -13.25623 -12.94671 -12.75856 -12.64972 -12.39491 -12.31125 -12.13656 -12.09877 -11.92654 -11.71979 -11.62954 -11.55989 -11.40926 -11.18560 -10.62348 -10.20590 -9.37131 -9.16961 -8.19190 -6.34273 1.39218 1.42368 1.53015 1.75047 2.27366 2.44039 3.08738 3.12492 3.30102 3.63649 3.80314 3.90652 4.04696 4.15913 4.21417 4.24084 4.29745 4.37229 4.48888 4.64385 4.73001 4.76549 4.80710 4.86584 4.93523 4.99104 4.99806 5.03535 5.09981 5.13193 5.18127 5.26178 5.35537 5.42707 5.46032 5.69063 5.99771 6.04739 6.07041 6.54516 6.58802 6.83529 7.33069 7.44835 8.85690 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.006219 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.009763 B = 4501.532637 C = 5950.214823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.047 0.953 9 C 0.255 3.745 10 N -0.577 5.577 11 C 0.508 3.492 12 O -0.581 6.581 13 C -0.118 4.118 14 C -0.071 4.071 15 C 0.078 3.922 16 H 0.061 0.939 17 C -0.134 4.134 18 C -0.146 4.146 19 C 0.047 3.953 20 N -0.696 5.696 21 C 0.060 3.940 22 C -0.184 4.184 23 C -0.184 4.184 24 H 0.268 0.732 25 H 0.019 0.981 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.344 0.656 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -7.680 9.742 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.065 0.935 9 C 0.134 3.866 10 N -0.305 5.305 11 C 0.299 3.701 12 O -0.465 6.465 13 C -0.158 4.158 14 C -0.110 4.110 15 C -0.032 4.032 16 H 0.079 0.921 17 C -0.173 4.173 18 C -0.185 4.185 19 C -0.082 4.082 20 N -0.326 5.326 21 C -0.044 4.044 22 C -0.221 4.221 23 C -0.223 4.223 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.026 -8.470 9.222 12.684 hybrid contribution 0.330 1.795 0.346 1.858 sum 2.356 -6.675 9.568 11.902 Atomic orbital electron populations 1.70018 1.07094 1.28116 1.50545 1.25616 0.95576 1.02134 0.94385 0.85537 0.78688 0.79592 0.78034 1.19932 1.20283 1.20006 1.21648 0.93028 0.91690 1.51757 0.93488 1.19101 0.87365 0.82559 0.97584 1.47682 1.44696 1.33712 1.04409 1.21144 0.81706 0.80778 0.86430 1.90415 1.33124 1.35063 1.87859 1.21493 1.01975 1.01069 0.91253 1.21228 0.98613 0.98777 0.92336 1.22162 0.88067 0.98707 0.94295 0.92050 1.22856 0.98412 1.00885 0.95116 1.23151 0.94844 1.02722 0.97746 1.22907 0.98385 0.97628 0.89318 1.61483 1.05951 1.19489 1.45652 1.21801 0.94910 0.99563 0.88170 1.23730 1.02513 0.90913 1.04954 1.23102 0.93896 1.03024 1.02247 0.92262 0.96265 0.94652 0.88959 0.90000 0.92403 0.92635 0.91251 0.90131 0.90831 0.89501 0.90180 0.91342 0.83977 0.85210 0.86878 0.87034 0.86868 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.66 13.29 21.45 0.28 -50.37 16 2 C 0.02 1.23 5.46 84.65 0.46 1.69 16 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -28.93 9.39 25.60 0.24 -28.69 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 9 C 0.25 12.55 5.10 85.63 0.44 12.99 16 10 N -0.58 -25.65 2.82 -802.17 -2.26 -27.91 16 11 C 0.51 21.95 7.46 87.66 0.65 22.60 16 12 O -0.58 -25.96 11.73 -3.04 -0.04 -25.99 16 13 C -0.12 -4.47 4.15 29.85 0.12 -4.35 16 14 C -0.07 -2.26 4.06 30.59 0.12 -2.14 16 15 C 0.08 2.00 3.33 45.26 0.15 2.15 16 16 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 17 C -0.13 -2.78 6.49 31.86 0.21 -2.57 16 18 C -0.15 -2.46 7.08 32.07 0.23 -2.23 16 19 C 0.05 0.91 7.58 86.77 0.66 1.57 16 20 N -0.70 -17.36 6.58 -482.38 -3.17 -20.53 16 21 C 0.06 2.38 6.62 44.99 0.30 2.68 16 22 C -0.18 -6.41 9.63 30.62 0.29 -6.12 16 23 C -0.18 -6.71 9.88 30.62 0.30 -6.41 16 24 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 26 H 0.04 1.79 6.31 -2.39 -0.02 1.77 16 27 H 0.09 3.53 7.04 -2.39 -0.02 3.52 16 28 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 29 H 0.06 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 1.50 7.85 -2.39 -0.02 1.48 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.34 8.07 8.91 -89.69 -0.80 7.28 16 38 H 0.13 4.77 8.09 -2.39 -0.02 4.75 16 39 H 0.11 4.51 5.22 -5.11 -0.03 4.49 16 40 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.07 2.80 7.59 -2.39 -0.02 2.78 16 Total: -1.00 -59.89 336.13 1.20 -58.70 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.18 Total: 30.70 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.18 Total: -8.82 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -5.15 Total: -98.81 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.04 Total: -25.99 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -59.89 1.20 -58.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383655257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -59.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds