Wall clock time and date at job start Mon Mar 30 2020 04:52:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 120.00145 * 2 1
4 4 H 1.48496 * 109.47414 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.46904 * 300.00178 * 3 2 1
6 6 H 1.48496 * 109.47137 * 60.00023 * 3 2 1
7 7 C 1.37871 * 120.00132 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00428 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99768 * 359.97438 * 7 2 1
10 10 C 1.53003 * 109.46799 * 180.02562 * 9 7 2
11 11 C 1.53006 * 109.46715 * 180.02562 * 10 9 7
12 12 C 1.53003 * 109.46715 * 179.97438 * 11 10 9
13 13 N 1.46504 * 109.46630 * 179.97438 * 12 11 10
14 14 C 1.50317 * 124.41760 * 270.09117 * 13 12 11
15 15 C 1.52654 * 102.46679 * 160.12091 * 14 13 12
16 16 H 1.09002 * 110.38201 * 278.70753 * 15 14 13
17 17 N 1.45122 * 118.46428 * 150.15682 * 15 14 13
18 18 C 1.47806 * 108.28880 * 181.26962 * 17 15 14
19 19 C 1.52528 * 112.26508 * 58.28466 * 18 17 15
20 20 C 1.54255 * 111.45180 * 307.56942 * 19 18 17
21 21 C 1.51536 * 106.00869 * 55.22049 * 20 19 18
22 22 H 1.09008 * 110.27425 * 54.60940 * 21 20 19
23 23 C 1.36176 * 124.63674 * 89.97816 * 13 12 11
24 24 O 1.21286 * 126.03244 * 354.23110 * 23 13 12
25 25 H 0.97007 * 119.99888 * 359.97438 * 1 2 3
26 26 H 1.08994 * 109.47172 * 60.00334 * 9 7 2
27 27 H 1.08997 * 109.46976 * 299.99879 * 9 7 2
28 28 H 1.08994 * 109.47180 * 60.00101 * 10 9 7
29 29 H 1.08997 * 109.47064 * 299.99588 * 10 9 7
30 30 H 1.08994 * 109.47267 * 60.00089 * 11 10 9
31 31 H 1.08997 * 109.46964 * 299.99583 * 11 10 9
32 32 H 1.08994 * 109.47180 * 60.00035 * 12 11 10
33 33 H 1.08997 * 109.47064 * 299.99522 * 12 11 10
34 34 H 1.09000 * 111.49554 * 41.77607 * 14 13 12
35 35 H 1.09004 * 110.69199 * 278.09604 * 14 13 12
36 36 H 1.00899 * 111.00423 * 303.35580 * 17 15 14
37 37 H 1.09006 * 108.92454 * 178.99912 * 18 17 15
38 38 H 1.08993 * 108.92633 * 297.65577 * 18 17 15
39 39 H 1.08996 * 109.08473 * 68.08030 * 19 18 17
40 40 H 1.09004 * 109.08141 * 187.06887 * 19 18 17
41 41 H 1.09001 * 110.13024 * 174.34425 * 20 19 18
42 42 H 1.08998 * 110.13490 * 296.09877 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 6 2.2452 -3.6620 -0.0005
11 6 1.4802 -4.9871 -0.0012
12 6 2.4745 -6.1500 -0.0018
13 7 1.7419 -7.4187 -0.0018
14 6 1.3158 -8.1538 1.2382
15 6 0.2061 -9.0633 0.7172
16 1 -0.7309 -8.5120 0.6383
17 7 -0.0120 -10.3367 1.3782
18 6 -1.1075 -11.0407 0.6789
19 6 -0.8007 -11.2639 -0.7985
20 6 -0.3963 -9.9486 -1.4956
21 6 0.7659 -9.3929 -0.6976
22 1 1.5575 -10.1377 -0.6145
23 6 1.3541 -8.0885 -1.1222
24 8 1.4666 -7.6946 -2.2638
25 1 -0.4850 0.8401 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6247 -2.5570 0.8897
28 1 2.8719 -3.6043 0.8894
29 1 2.8718 -3.6043 -0.8905
30 1 0.8539 -5.0446 -0.8913
31 1 0.8533 -5.0451 0.8886
32 1 3.1011 -6.0927 0.8881
33 1 3.1010 -6.0918 -0.8918
34 1 0.9290 -7.4707 1.9944
35 1 2.1401 -8.7443 1.6383
36 1 0.8306 -10.8917 1.3812
37 1 -1.2682 -12.0073 1.1564
38 1 -2.0189 -10.4491 0.7638
39 1 0.0155 -11.9807 -0.8887
40 1 -1.6857 -11.6696 -1.2888
41 1 -0.0861 -10.1478 -2.5214
42 1 -1.2296 -9.2461 -1.4838
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385251759.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:11
Heat of formation + Delta-G solvation = -48.507056 kcal
Electronic energy + Delta-G solvation = -20255.750631 eV
Core-core repulsion = 17234.662189 eV
Total energy + Delta-G solvation = -3021.088441 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.17326 -38.09826 -36.21477 -34.64630 -32.71010 -32.38380 -31.03752 -28.39831
-27.09463 -25.44692 -23.69894 -22.09706 -21.87785 -21.18541 -20.05506 -19.21809
-16.72935 -16.61877 -16.19118 -15.87413 -15.39844 -15.25024 -14.58518 -14.43170
-14.14986 -13.75863 -13.63048 -13.25992 -12.93653 -12.62970 -12.37617 -12.22836
-11.87799 -11.69455 -11.61635 -11.48387 -11.28521 -11.17080 -10.98037 -10.57127
-10.49701 -10.48816 -9.86198 -9.63280 -9.40219 -9.06252 -8.73457 -8.52933
-8.31422 -5.96126 -3.98351 2.50565 2.86681 3.33315 3.40520 3.44916
3.52954 4.16619 4.26184 4.36634 4.49124 4.59560 4.72281 4.83841
4.84155 5.02693 5.14969 5.26688 5.32405 5.39545 5.41298 5.42865
5.53165 5.56536 5.67331 5.74550 5.77014 5.87031 6.01694 6.11236
6.42592 6.49769 6.58856 6.77713 6.88435 6.95018 7.06117 7.19219
7.72687 7.87942 8.04727 8.16940 8.47313 9.09291 9.65540 11.15288
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.038844 B = 0.003136 C = 0.003112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 720.653252 B = 8927.492822 C = 8996.710729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.055 0.945
9 C 0.021 3.979
10 C -0.108 4.108
11 C -0.133 4.133
12 C 0.127 3.873
13 N -0.629 5.629
14 C 0.118 3.882
15 C 0.071 3.929
16 H 0.103 0.897
17 N -0.658 5.658
18 C 0.052 3.948
19 C -0.155 4.155
20 C -0.097 4.097
21 C -0.173 4.173
22 H 0.103 0.897
23 C 0.528 3.472
24 O -0.519 6.519
25 H 0.259 0.741
26 H 0.015 0.985
27 H 0.015 0.985
28 H 0.048 0.952
29 H 0.048 0.952
30 H 0.060 0.940
31 H 0.058 0.942
32 H 0.077 0.923
33 H 0.078 0.922
34 H 0.093 0.907
35 H 0.076 0.924
36 H 0.342 0.658
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.062 0.938
40 H 0.074 0.926
41 H 0.074 0.926
42 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.137 -25.327 3.156 25.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.719 3.281
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.557 4.557
8 H 0.073 0.927
9 C -0.016 4.016
10 C -0.146 4.146
11 C -0.172 4.172
12 C 0.006 3.994
13 N -0.365 5.365
14 C -0.004 4.004
15 C -0.041 4.041
16 H 0.121 0.879
17 N -0.286 5.286
18 C -0.077 4.077
19 C -0.194 4.194
20 C -0.135 4.135
21 C -0.196 4.196
22 H 0.121 0.879
23 C 0.315 3.685
24 O -0.394 6.394
25 H 0.069 0.931
26 H 0.033 0.967
27 H 0.033 0.967
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.078 0.922
31 H 0.077 0.923
32 H 0.095 0.905
33 H 0.096 0.904
34 H 0.111 0.889
35 H 0.094 0.906
36 H 0.159 0.841
37 H 0.098 0.902
38 H 0.094 0.906
39 H 0.081 0.919
40 H 0.092 0.908
41 H 0.093 0.907
42 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -0.577 -24.678 3.100 24.879
hybrid contribution 0.884 0.731 -0.832 1.417
sum 0.307 -23.948 2.268 24.057
Atomic orbital electron populations
1.69983 1.06062 1.26401 1.51121 1.25039 0.94850 0.99267 0.95430
0.86548 0.80122 0.83861 0.77544 1.19747 1.21035 1.21038 1.21322
0.93067 0.91157 1.50195 0.92661 1.19090 0.94017 0.91344 0.97144
1.21572 0.99128 0.93627 1.00266 1.22034 0.98475 0.94650 1.01997
1.21592 0.94123 0.81060 1.02668 1.49718 1.57580 1.23138 1.06105
1.22165 0.96258 0.94572 0.87447 1.22395 0.99397 0.92303 0.90020
0.87893 1.60945 1.11277 1.03738 1.52609 1.22114 0.94916 0.99299
0.91395 1.22311 1.02338 0.97498 0.97249 1.21293 0.96437 0.96618
0.99158 1.22533 0.99712 0.97134 1.00262 0.87931 1.20310 0.77694
0.85959 0.84512 1.90729 1.55643 1.73128 1.19877 0.93112 0.96676
0.96712 0.93333 0.93296 0.92156 0.92334 0.90509 0.90396 0.88878
0.90590 0.84052 0.90221 0.90554 0.91920 0.90758 0.90732 0.90924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16
2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16
4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16
8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16
10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16
11 C -0.13 -2.35 5.54 -26.73 -0.15 -2.50 16
12 C 0.13 1.82 6.02 -4.04 -0.02 1.80 16
13 N -0.63 -8.07 3.07 -170.88 -0.52 -8.60 16
14 C 0.12 1.08 7.42 -2.08 -0.02 1.06 16
15 C 0.07 0.60 2.92 -67.42 -0.20 0.40 16
16 H 0.10 1.00 7.84 -51.93 -0.41 0.59 16
17 N -0.66 -4.43 7.03 -106.19 -0.75 -5.18 16
18 C 0.05 0.31 6.43 -3.57 -0.02 0.28 16
19 C -0.15 -0.94 5.96 -26.32 -0.16 -1.10 16
20 C -0.10 -0.86 5.84 -26.82 -0.16 -1.02 16
21 C -0.17 -1.68 2.30 -91.78 -0.21 -1.90 16
22 H 0.10 0.87 7.88 -51.92 -0.41 0.46 16
23 C 0.53 7.54 7.70 -11.04 -0.09 7.46 16
24 O -0.52 -9.73 17.77 5.55 0.10 -9.63 16
25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
26 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16
28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16
34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
36 H 0.34 1.85 8.55 -39.29 -0.34 1.52 16
37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
38 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16
39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16
LS Contribution 337.13 15.07 5.08 5.08
Total: -1.00 -33.58 337.13 -9.52 -43.10
By element:
Atomic # 1 Polarization: 3.85 SS G_CDS: -7.44 Total: -3.59 kcal
Atomic # 6 Polarization: -9.68 SS G_CDS: -1.70 Total: -11.38 kcal
Atomic # 7 Polarization: -40.12 SS G_CDS: -0.53 Total: -40.66 kcal
Atomic # 8 Polarization: -9.73 SS G_CDS: 0.10 Total: -9.63 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -33.58 -9.52 -43.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385251759.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.404 kcal
(2) G-P(sol) polarization free energy of solvation -33.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds