Wall clock time and date at job start Mon Mar 30 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47414 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46904 * 300.00178 * 3 2 1 6 6 H 1.48496 * 109.47137 * 60.00023 * 3 2 1 7 7 C 1.37871 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46799 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46715 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46715 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46630 * 179.97438 * 12 11 10 14 14 C 1.50317 * 124.41760 * 270.09117 * 13 12 11 15 15 C 1.52654 * 102.46679 * 160.12091 * 14 13 12 16 16 H 1.09002 * 110.38201 * 278.70753 * 15 14 13 17 17 N 1.45122 * 118.46428 * 150.15682 * 15 14 13 18 18 C 1.47806 * 108.28880 * 181.26962 * 17 15 14 19 19 C 1.52528 * 112.26508 * 58.28466 * 18 17 15 20 20 C 1.54255 * 111.45180 * 307.56942 * 19 18 17 21 21 C 1.51536 * 106.00869 * 55.22049 * 20 19 18 22 22 H 1.09008 * 110.27425 * 54.60940 * 21 20 19 23 23 C 1.36176 * 124.63674 * 89.97816 * 13 12 11 24 24 O 1.21286 * 126.03244 * 354.23110 * 23 13 12 25 25 H 0.97007 * 119.99888 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47172 * 60.00334 * 9 7 2 27 27 H 1.08997 * 109.46976 * 299.99879 * 9 7 2 28 28 H 1.08994 * 109.47180 * 60.00101 * 10 9 7 29 29 H 1.08997 * 109.47064 * 299.99588 * 10 9 7 30 30 H 1.08994 * 109.47267 * 60.00089 * 11 10 9 31 31 H 1.08997 * 109.46964 * 299.99583 * 11 10 9 32 32 H 1.08994 * 109.47180 * 60.00035 * 12 11 10 33 33 H 1.08997 * 109.47064 * 299.99522 * 12 11 10 34 34 H 1.09000 * 111.49554 * 41.77607 * 14 13 12 35 35 H 1.09004 * 110.69199 * 278.09604 * 14 13 12 36 36 H 1.00899 * 111.00423 * 303.35580 * 17 15 14 37 37 H 1.09006 * 108.92454 * 178.99912 * 18 17 15 38 38 H 1.08993 * 108.92633 * 297.65577 * 18 17 15 39 39 H 1.08996 * 109.08473 * 68.08030 * 19 18 17 40 40 H 1.09004 * 109.08141 * 187.06887 * 19 18 17 41 41 H 1.09001 * 110.13024 * 174.34425 * 20 19 18 42 42 H 1.08998 * 110.13490 * 296.09877 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7419 -7.4187 -0.0018 14 6 1.3158 -8.1538 1.2382 15 6 0.2061 -9.0633 0.7172 16 1 -0.7309 -8.5120 0.6383 17 7 -0.0120 -10.3367 1.3782 18 6 -1.1075 -11.0407 0.6789 19 6 -0.8007 -11.2639 -0.7985 20 6 -0.3963 -9.9486 -1.4956 21 6 0.7659 -9.3929 -0.6976 22 1 1.5575 -10.1377 -0.6145 23 6 1.3541 -8.0885 -1.1222 24 8 1.4666 -7.6946 -2.2638 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8894 29 1 2.8718 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8913 31 1 0.8533 -5.0451 0.8886 32 1 3.1011 -6.0927 0.8881 33 1 3.1010 -6.0918 -0.8918 34 1 0.9290 -7.4707 1.9944 35 1 2.1401 -8.7443 1.6383 36 1 0.8306 -10.8917 1.3812 37 1 -1.2682 -12.0073 1.1564 38 1 -2.0189 -10.4491 0.7638 39 1 0.0155 -11.9807 -0.8887 40 1 -1.6857 -11.6696 -1.2888 41 1 -0.0861 -10.1478 -2.5214 42 1 -1.2296 -9.2461 -1.4838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385251759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:11 Heat of formation + Delta-G solvation = -71.628066 kcal Electronic energy + Delta-G solvation = -20256.753233 eV Core-core repulsion = 17234.662189 eV Total energy + Delta-G solvation = -3022.091044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04544 -39.01670 -37.48524 -36.19940 -34.54623 -33.04449 -32.35828 -29.88654 -27.92956 -26.98257 -24.95174 -23.26006 -22.77903 -21.89785 -21.83914 -20.25917 -18.47247 -17.72001 -17.51328 -16.75999 -16.52815 -16.14446 -16.05921 -15.88737 -15.16776 -14.76995 -14.61024 -14.34232 -14.05142 -13.94037 -13.72250 -13.56468 -13.32363 -12.97423 -12.86710 -12.43303 -12.33332 -12.27969 -12.23075 -12.16966 -11.93733 -11.69835 -11.46152 -11.40518 -11.18861 -10.87257 -10.58396 -9.71674 -9.35120 -8.21770 -6.33733 1.38370 1.39433 1.41324 1.52962 1.88946 2.39783 2.84749 3.10986 3.40707 3.53966 3.72260 3.94980 3.97057 4.05499 4.10278 4.21893 4.25169 4.38942 4.39515 4.50840 4.55324 4.64448 4.75335 4.79166 4.86844 4.88769 4.94703 5.05025 5.07457 5.12992 5.21222 5.25548 5.29416 5.50581 5.55332 5.72333 5.83634 5.84355 6.01431 6.22628 6.44202 6.83897 7.06974 7.35916 8.90485 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.003136 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.653252 B = 8927.492822 C = 8996.710729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.120 4.120 12 C 0.134 3.866 13 N -0.630 5.630 14 C 0.117 3.883 15 C 0.084 3.916 16 H 0.087 0.913 17 N -0.654 5.654 18 C 0.052 3.948 19 C -0.144 4.144 20 C -0.101 4.101 21 C -0.166 4.166 22 H 0.124 0.876 23 C 0.514 3.486 24 O -0.576 6.576 25 H 0.264 0.736 26 H -0.021 1.021 27 H -0.007 1.007 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.354 0.646 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -26.777 4.929 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.159 4.159 12 C 0.012 3.988 13 N -0.365 5.365 14 C -0.004 4.004 15 C -0.028 4.028 16 H 0.105 0.895 17 N -0.283 5.283 18 C -0.077 4.077 19 C -0.183 4.183 20 C -0.139 4.139 21 C -0.189 4.189 22 H 0.142 0.858 23 C 0.303 3.697 24 O -0.456 6.456 25 H 0.072 0.928 26 H -0.002 1.002 27 H 0.012 0.988 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.173 0.827 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.720 -26.167 4.919 26.635 hybrid contribution 0.419 1.173 -1.382 1.860 sum 1.139 -24.995 3.537 25.269 Atomic orbital electron populations 1.70122 1.07949 1.27738 1.51816 1.26059 0.95819 1.03635 0.94693 0.85346 0.79106 0.78460 0.77815 1.18367 1.20554 1.20045 1.21768 0.93663 0.92355 1.50360 0.91920 1.19019 0.94514 0.93513 0.94378 1.21372 0.97987 0.93000 1.00966 1.21852 0.98640 0.94689 1.00742 1.21397 0.93244 0.80583 1.03615 1.49845 1.56777 1.22461 1.07393 1.22423 0.97456 0.94705 0.85785 1.22233 0.98411 0.93100 0.89099 0.89451 1.60940 1.12107 1.03120 1.52103 1.22168 0.94253 1.00025 0.91216 1.22246 1.03198 0.95746 0.97096 1.21328 0.95660 0.97980 0.98916 1.22565 1.00317 0.95056 1.00935 0.85816 1.21174 0.77042 0.87547 0.83962 1.90687 1.57943 1.74726 1.22205 0.92771 1.00211 0.98817 0.91435 0.93568 0.95254 0.91730 0.87238 0.91744 0.88305 0.87606 0.82665 0.88114 0.91328 0.90600 0.89816 0.92018 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.44 0.28 -58.61 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.03 5.15 30.60 0.16 -3.88 16 11 C -0.12 -4.34 5.54 30.60 0.17 -4.17 16 12 C 0.13 3.74 6.02 86.38 0.52 4.26 16 13 N -0.63 -15.62 3.07 -812.14 -2.49 -18.11 16 14 C 0.12 1.84 7.42 85.52 0.63 2.48 16 15 C 0.08 1.27 2.92 46.06 0.13 1.41 16 16 H 0.09 1.63 7.84 -2.39 -0.02 1.61 16 17 N -0.65 -6.81 7.03 -489.86 -3.44 -10.25 16 18 C 0.05 0.47 6.43 85.97 0.55 1.03 16 19 C -0.14 -1.42 5.96 30.86 0.18 -1.24 16 20 C -0.10 -1.75 5.84 30.54 0.18 -1.57 16 21 C -0.17 -3.05 2.30 -11.54 -0.03 -3.07 16 22 H 0.12 1.78 7.88 -2.38 -0.02 1.76 16 23 C 0.51 14.85 7.70 86.99 0.67 15.52 16 24 O -0.58 -22.74 17.77 -3.05 -0.05 -22.80 16 25 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 26 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.35 2.43 8.55 -89.69 -0.77 1.66 16 37 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.15 8.00 -2.39 -0.02 1.13 16 Total: -1.00 -75.81 337.13 0.56 -75.25 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.21 Total: 6.61 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.02 Total: -19.47 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -5.65 Total: -86.98 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.81 0.56 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.620 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds