Wall clock time and date at job start Mon Mar 30 2020 04:52:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 120.00145 * 2 1
4 4 H 1.48496 * 109.47414 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.46904 * 300.00178 * 3 2 1
6 6 H 1.48496 * 109.47137 * 60.00023 * 3 2 1
7 7 C 1.37871 * 120.00132 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00428 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99768 * 359.97438 * 7 2 1
10 10 C 1.53003 * 109.46799 * 180.02562 * 9 7 2
11 11 C 1.53006 * 109.46715 * 180.02562 * 10 9 7
12 12 C 1.53003 * 109.46715 * 179.97438 * 11 10 9
13 13 N 1.46504 * 109.46630 * 179.97438 * 12 11 10
14 14 C 1.50317 * 124.41760 * 270.09117 * 13 12 11
15 15 C 1.52654 * 102.46679 * 160.12091 * 14 13 12
16 16 H 1.09002 * 110.38201 * 278.70753 * 15 14 13
17 17 N 1.45122 * 118.46428 * 150.15682 * 15 14 13
18 18 C 1.47806 * 108.28880 * 181.26962 * 17 15 14
19 19 C 1.52528 * 112.26508 * 58.28466 * 18 17 15
20 20 C 1.54255 * 111.45180 * 307.56942 * 19 18 17
21 21 C 1.51536 * 106.00869 * 55.22049 * 20 19 18
22 22 H 1.09008 * 110.27425 * 54.60940 * 21 20 19
23 23 C 1.36176 * 124.63674 * 89.97816 * 13 12 11
24 24 O 1.21286 * 126.03244 * 354.23110 * 23 13 12
25 25 H 0.97007 * 119.99888 * 359.97438 * 1 2 3
26 26 H 1.08994 * 109.47172 * 60.00334 * 9 7 2
27 27 H 1.08997 * 109.46976 * 299.99879 * 9 7 2
28 28 H 1.08994 * 109.47180 * 60.00101 * 10 9 7
29 29 H 1.08997 * 109.47064 * 299.99588 * 10 9 7
30 30 H 1.08994 * 109.47267 * 60.00089 * 11 10 9
31 31 H 1.08997 * 109.46964 * 299.99583 * 11 10 9
32 32 H 1.08994 * 109.47180 * 60.00035 * 12 11 10
33 33 H 1.08997 * 109.47064 * 299.99522 * 12 11 10
34 34 H 1.09000 * 111.49554 * 41.77607 * 14 13 12
35 35 H 1.09004 * 110.69199 * 278.09604 * 14 13 12
36 36 H 1.00899 * 111.00423 * 303.35580 * 17 15 14
37 37 H 1.09006 * 108.92454 * 178.99912 * 18 17 15
38 38 H 1.08993 * 108.92633 * 297.65577 * 18 17 15
39 39 H 1.08996 * 109.08473 * 68.08030 * 19 18 17
40 40 H 1.09004 * 109.08141 * 187.06887 * 19 18 17
41 41 H 1.09001 * 110.13024 * 174.34425 * 20 19 18
42 42 H 1.08998 * 110.13490 * 296.09877 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 6 2.2452 -3.6620 -0.0005
11 6 1.4802 -4.9871 -0.0012
12 6 2.4745 -6.1500 -0.0018
13 7 1.7419 -7.4187 -0.0018
14 6 1.3158 -8.1538 1.2382
15 6 0.2061 -9.0633 0.7172
16 1 -0.7309 -8.5120 0.6383
17 7 -0.0120 -10.3367 1.3782
18 6 -1.1075 -11.0407 0.6789
19 6 -0.8007 -11.2639 -0.7985
20 6 -0.3963 -9.9486 -1.4956
21 6 0.7659 -9.3929 -0.6976
22 1 1.5575 -10.1377 -0.6145
23 6 1.3541 -8.0885 -1.1222
24 8 1.4666 -7.6946 -2.2638
25 1 -0.4850 0.8401 0.0004
26 1 0.6240 -2.5567 -0.8903
27 1 0.6247 -2.5570 0.8897
28 1 2.8719 -3.6043 0.8894
29 1 2.8718 -3.6043 -0.8905
30 1 0.8539 -5.0446 -0.8913
31 1 0.8533 -5.0451 0.8886
32 1 3.1011 -6.0927 0.8881
33 1 3.1010 -6.0918 -0.8918
34 1 0.9290 -7.4707 1.9944
35 1 2.1401 -8.7443 1.6383
36 1 0.8306 -10.8917 1.3812
37 1 -1.2682 -12.0073 1.1564
38 1 -2.0189 -10.4491 0.7638
39 1 0.0155 -11.9807 -0.8887
40 1 -1.6857 -11.6696 -1.2888
41 1 -0.0861 -10.1478 -2.5214
42 1 -1.2296 -9.2461 -1.4838
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385251759.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:11
Heat of formation + Delta-G solvation = -71.628066 kcal
Electronic energy + Delta-G solvation = -20256.753233 eV
Core-core repulsion = 17234.662189 eV
Total energy + Delta-G solvation = -3022.091044 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.04544 -39.01670 -37.48524 -36.19940 -34.54623 -33.04449 -32.35828 -29.88654
-27.92956 -26.98257 -24.95174 -23.26006 -22.77903 -21.89785 -21.83914 -20.25917
-18.47247 -17.72001 -17.51328 -16.75999 -16.52815 -16.14446 -16.05921 -15.88737
-15.16776 -14.76995 -14.61024 -14.34232 -14.05142 -13.94037 -13.72250 -13.56468
-13.32363 -12.97423 -12.86710 -12.43303 -12.33332 -12.27969 -12.23075 -12.16966
-11.93733 -11.69835 -11.46152 -11.40518 -11.18861 -10.87257 -10.58396 -9.71674
-9.35120 -8.21770 -6.33733 1.38370 1.39433 1.41324 1.52962 1.88946
2.39783 2.84749 3.10986 3.40707 3.53966 3.72260 3.94980 3.97057
4.05499 4.10278 4.21893 4.25169 4.38942 4.39515 4.50840 4.55324
4.64448 4.75335 4.79166 4.86844 4.88769 4.94703 5.05025 5.07457
5.12992 5.21222 5.25548 5.29416 5.50581 5.55332 5.72333 5.83634
5.84355 6.01431 6.22628 6.44202 6.83897 7.06974 7.35916 8.90485
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.038844 B = 0.003136 C = 0.003112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 720.653252 B = 8927.492822 C = 8996.710729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.005 4.005
3 Si 0.969 3.031
4 H -0.260 1.260
5 H -0.280 1.280
6 H -0.275 1.275
7 C -0.544 4.544
8 H 0.063 0.937
9 C 0.023 3.977
10 C -0.095 4.095
11 C -0.120 4.120
12 C 0.134 3.866
13 N -0.630 5.630
14 C 0.117 3.883
15 C 0.084 3.916
16 H 0.087 0.913
17 N -0.654 5.654
18 C 0.052 3.948
19 C -0.144 4.144
20 C -0.101 4.101
21 C -0.166 4.166
22 H 0.124 0.876
23 C 0.514 3.486
24 O -0.576 6.576
25 H 0.264 0.736
26 H -0.021 1.021
27 H -0.007 1.007
28 H 0.067 0.933
29 H 0.046 0.954
30 H 0.029 0.971
31 H 0.064 0.936
32 H 0.109 0.891
33 H 0.064 0.936
34 H 0.099 0.901
35 H 0.106 0.894
36 H 0.354 0.646
37 H 0.101 0.899
38 H 0.068 0.932
39 H 0.075 0.925
40 H 0.083 0.917
41 H 0.061 0.939
42 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.157 -26.777 4.929 27.252
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.202 4.202
3 Si 0.793 3.207
4 H -0.184 1.184
5 H -0.206 1.206
6 H -0.200 1.200
7 C -0.581 4.581
8 H 0.081 0.919
9 C -0.014 4.014
10 C -0.133 4.133
11 C -0.159 4.159
12 C 0.012 3.988
13 N -0.365 5.365
14 C -0.004 4.004
15 C -0.028 4.028
16 H 0.105 0.895
17 N -0.283 5.283
18 C -0.077 4.077
19 C -0.183 4.183
20 C -0.139 4.139
21 C -0.189 4.189
22 H 0.142 0.858
23 C 0.303 3.697
24 O -0.456 6.456
25 H 0.072 0.928
26 H -0.002 1.002
27 H 0.012 0.988
28 H 0.086 0.914
29 H 0.064 0.936
30 H 0.047 0.953
31 H 0.083 0.917
32 H 0.128 0.872
33 H 0.083 0.917
34 H 0.117 0.883
35 H 0.124 0.876
36 H 0.173 0.827
37 H 0.119 0.881
38 H 0.087 0.913
39 H 0.094 0.906
40 H 0.102 0.898
41 H 0.080 0.920
42 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 0.720 -26.167 4.919 26.635
hybrid contribution 0.419 1.173 -1.382 1.860
sum 1.139 -24.995 3.537 25.269
Atomic orbital electron populations
1.70122 1.07949 1.27738 1.51816 1.26059 0.95819 1.03635 0.94693
0.85346 0.79106 0.78460 0.77815 1.18367 1.20554 1.20045 1.21768
0.93663 0.92355 1.50360 0.91920 1.19019 0.94514 0.93513 0.94378
1.21372 0.97987 0.93000 1.00966 1.21852 0.98640 0.94689 1.00742
1.21397 0.93244 0.80583 1.03615 1.49845 1.56777 1.22461 1.07393
1.22423 0.97456 0.94705 0.85785 1.22233 0.98411 0.93100 0.89099
0.89451 1.60940 1.12107 1.03120 1.52103 1.22168 0.94253 1.00025
0.91216 1.22246 1.03198 0.95746 0.97096 1.21328 0.95660 0.97980
0.98916 1.22565 1.00317 0.95056 1.00935 0.85816 1.21174 0.77042
0.87547 0.83962 1.90687 1.57943 1.74726 1.22205 0.92771 1.00211
0.98817 0.91435 0.93568 0.95254 0.91730 0.87238 0.91744 0.88305
0.87606 0.82665 0.88114 0.91328 0.90600 0.89816 0.92018 0.92464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.90 13.29 21.44 0.28 -58.61 16
2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16
3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16
4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16
5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16
7 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16
8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16
9 C 0.02 1.27 4.97 29.85 0.15 1.42 16
10 C -0.10 -4.03 5.15 30.60 0.16 -3.88 16
11 C -0.12 -4.34 5.54 30.60 0.17 -4.17 16
12 C 0.13 3.74 6.02 86.38 0.52 4.26 16
13 N -0.63 -15.62 3.07 -812.14 -2.49 -18.11 16
14 C 0.12 1.84 7.42 85.52 0.63 2.48 16
15 C 0.08 1.27 2.92 46.06 0.13 1.41 16
16 H 0.09 1.63 7.84 -2.39 -0.02 1.61 16
17 N -0.65 -6.81 7.03 -489.86 -3.44 -10.25 16
18 C 0.05 0.47 6.43 85.97 0.55 1.03 16
19 C -0.14 -1.42 5.96 30.86 0.18 -1.24 16
20 C -0.10 -1.75 5.84 30.54 0.18 -1.57 16
21 C -0.17 -3.05 2.30 -11.54 -0.03 -3.07 16
22 H 0.12 1.78 7.88 -2.38 -0.02 1.76 16
23 C 0.51 14.85 7.70 86.99 0.67 15.52 16
24 O -0.58 -22.74 17.77 -3.05 -0.05 -22.80 16
25 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16
26 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16
27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16
29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16
34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
35 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16
36 H 0.35 2.43 8.55 -89.69 -0.77 1.66 16
37 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16
38 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16
39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
42 H 0.06 1.15 8.00 -2.39 -0.02 1.13 16
Total: -1.00 -75.81 337.13 0.56 -75.25
By element:
Atomic # 1 Polarization: 6.40 SS G_CDS: 0.21 Total: 6.61 kcal
Atomic # 6 Polarization: -23.49 SS G_CDS: 4.02 Total: -19.47 kcal
Atomic # 7 Polarization: -81.33 SS G_CDS: -5.65 Total: -86.98 kcal
Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.80 kcal
Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal
Total: -75.81 0.56 -75.25 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385251759.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.620 kcal
(2) G-P(sol) polarization free energy of solvation -75.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.185 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds