Wall clock time and date at job start Mon Mar 30 2020 04:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47221 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.47411 * 30.00403 * 3 2 1 6 6 H 1.48502 * 109.47222 * 150.00489 * 3 2 1 7 7 C 1.37879 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47202 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47019 * 179.97438 * 12 11 10 14 14 C 1.46944 * 124.43362 * 269.98263 * 13 12 11 15 15 C 1.55288 * 104.97102 * 197.82206 * 14 13 12 16 16 H 1.09003 * 110.91393 * 214.98010 * 15 14 13 17 17 N 1.45838 * 108.02067 * 93.02235 * 15 14 13 18 18 C 1.46116 * 114.04943 * 201.99678 * 17 15 14 19 19 C 1.53246 * 108.77294 * 60.94794 * 18 17 15 20 20 C 1.52558 * 108.33900 * 295.86129 * 19 18 17 21 21 C 1.50639 * 112.24151 * 54.61806 * 20 19 18 22 22 H 1.08997 * 108.21583 * 198.30633 * 21 20 19 23 23 C 1.34807 * 124.42808 * 90.02872 * 13 12 11 24 24 O 1.21285 * 125.36736 * 0.24734 * 23 13 12 25 25 H 0.97002 * 119.99223 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46864 * 60.00340 * 9 7 2 27 27 H 1.08998 * 109.47203 * 300.01013 * 9 7 2 28 28 H 1.09002 * 109.47246 * 60.00226 * 10 9 7 29 29 H 1.09005 * 109.47100 * 299.99981 * 10 9 7 30 30 H 1.09002 * 109.47035 * 59.99853 * 11 10 9 31 31 H 1.08998 * 109.46975 * 300.00561 * 11 10 9 32 32 H 1.08999 * 109.47261 * 60.00510 * 12 11 10 33 33 H 1.09006 * 109.47619 * 299.99803 * 12 11 10 34 34 H 1.09007 * 110.34383 * 316.69899 * 14 13 12 35 35 H 1.09007 * 110.33883 * 78.94612 * 14 13 12 36 36 H 1.00897 * 111.26163 * 75.50431 * 17 15 14 37 37 H 1.09002 * 109.61105 * 301.11532 * 18 17 15 38 38 H 1.09004 * 109.60790 * 180.77366 * 18 17 15 39 39 H 1.08992 * 109.69310 * 55.57670 * 19 18 17 40 40 H 1.09005 * 109.68774 * 176.11830 * 19 18 17 41 41 H 1.08999 * 108.92834 * 175.32446 * 20 19 18 42 42 H 1.09001 * 108.93370 * 293.90854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4742 -6.1500 -0.0018 13 7 1.7416 -7.4188 -0.0018 14 6 1.3269 -8.1388 1.2101 15 6 1.0218 -9.5847 0.7331 16 1 0.1905 -10.0122 1.2938 17 7 2.2324 -10.3803 0.9016 18 6 2.2816 -11.5749 0.0617 19 6 2.2351 -11.1462 -1.4088 20 6 0.8904 -10.4748 -1.6708 21 6 0.6260 -9.3374 -0.7191 22 1 -0.4425 -9.1225 -0.7335 23 6 1.3606 -8.0788 -1.1138 24 8 1.5738 -7.7183 -2.2520 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8914 31 1 0.8531 -5.0450 0.8885 32 1 3.1009 -6.0928 0.8882 33 1 3.1009 -6.0919 -0.8918 34 1 2.1341 -8.1439 1.9428 35 1 0.4322 -7.6829 1.6342 36 1 2.3849 -10.6136 1.8713 37 1 1.4267 -12.2137 0.2838 38 1 3.2055 -12.1201 0.2548 39 1 3.0425 -10.4428 -1.6120 40 1 2.3403 -12.0214 -2.0500 41 1 0.8793 -10.0918 -2.6912 42 1 0.0984 -11.2160 -1.5645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385252179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:19 Heat of formation + Delta-G solvation = -53.684814 kcal Electronic energy + Delta-G solvation = -20362.048275 eV Core-core repulsion = 17340.735309 eV Total energy + Delta-G solvation = -3021.312966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03731 -37.66837 -36.24562 -34.61906 -32.75054 -32.66947 -31.15502 -28.42985 -26.89333 -25.37777 -23.94388 -22.54429 -22.05607 -20.15830 -20.04068 -18.78739 -17.31440 -16.30465 -16.19476 -15.93892 -15.29586 -15.01500 -14.55284 -14.41581 -14.25248 -13.89666 -13.41171 -13.27704 -12.80553 -12.70136 -12.46711 -12.24821 -11.94784 -11.78002 -11.64511 -11.19395 -10.98890 -10.93059 -10.65533 -10.54514 -10.46875 -10.46687 -9.65429 -9.60208 -9.33454 -9.04882 -8.75523 -8.42603 -8.30039 -5.95133 -3.97245 2.71348 3.12568 3.35269 3.41028 3.44597 3.70298 4.06685 4.16725 4.45568 4.50092 4.72441 4.79072 4.90718 5.10217 5.19004 5.29665 5.31184 5.36463 5.40563 5.44795 5.45062 5.59247 5.65592 5.72159 5.82769 5.92391 6.03707 6.07832 6.18601 6.52523 6.71015 6.73508 6.82085 6.97076 7.00985 7.20944 7.26820 7.73650 7.89297 8.05854 8.32408 8.48590 9.10202 9.66483 11.16303 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047418 B = 0.003127 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.353678 B = 8951.197106 C = 9076.548253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.133 4.133 12 C 0.127 3.873 13 N -0.610 5.610 14 C 0.109 3.891 15 C 0.090 3.910 16 H 0.067 0.933 17 N -0.694 5.694 18 C 0.067 3.933 19 C -0.119 4.119 20 C -0.103 4.103 21 C -0.118 4.118 22 H 0.103 0.897 23 C 0.527 3.473 24 O -0.529 6.529 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.350 0.650 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -25.927 3.748 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.171 4.171 12 C 0.006 3.994 13 N -0.343 5.343 14 C -0.015 4.015 15 C -0.020 4.020 16 H 0.085 0.915 17 N -0.327 5.327 18 C -0.061 4.061 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.140 4.140 22 H 0.121 0.879 23 C 0.314 3.686 24 O -0.405 6.405 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.162 -25.178 2.705 25.415 hybrid contribution -0.306 0.524 0.626 0.871 sum 1.856 -24.654 3.331 24.947 Atomic orbital electron populations 1.69974 1.06068 1.26493 1.51092 1.25039 0.94851 0.99256 0.95431 0.86600 0.79829 0.83503 0.78100 1.20675 1.21266 1.19880 1.21293 0.93049 0.91170 1.50259 0.92695 1.19084 0.94015 0.91343 0.97110 1.21568 0.99121 0.93587 1.00305 1.22030 0.98480 0.94734 1.01871 1.21578 0.94116 0.80875 1.02799 1.48355 1.56516 1.22894 1.06576 1.22410 1.00722 0.90188 0.88174 1.21842 0.91419 0.93635 0.95139 0.91517 1.58695 1.37762 1.24028 1.12254 1.21739 1.00532 0.90317 0.93550 1.21550 0.97997 1.00676 0.95492 1.20738 0.97815 0.95868 0.99696 1.21030 1.01778 0.95914 0.95231 0.87942 1.20558 0.78475 0.84966 0.84622 1.90713 1.57323 1.71886 1.20564 0.93073 0.96683 0.96750 0.93343 0.93249 0.92212 0.92434 0.90644 0.90315 0.89666 0.90875 0.82975 0.95171 0.90534 0.90905 0.91095 0.90227 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.13 -2.38 5.54 -26.73 -0.15 -2.53 16 12 C 0.13 1.93 5.96 -4.04 -0.02 1.90 16 13 N -0.61 -8.31 2.95 -171.76 -0.51 -8.82 16 14 C 0.11 1.04 7.03 -2.59 -0.02 1.03 16 15 C 0.09 0.73 3.78 -67.31 -0.25 0.48 16 16 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 17 N -0.69 -5.25 6.15 -106.86 -0.66 -5.91 16 18 C 0.07 0.47 6.58 -4.12 -0.03 0.44 16 19 C -0.12 -1.03 6.14 -26.83 -0.16 -1.19 16 20 C -0.10 -0.97 5.35 -28.14 -0.15 -1.12 16 21 C -0.12 -1.23 2.65 -93.06 -0.25 -1.48 16 22 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 23 C 0.53 7.89 7.57 -10.84 -0.08 7.81 16 24 O -0.53 -10.14 17.06 5.55 0.09 -10.04 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.30 7.95 -51.93 -0.41 0.88 16 34 H 0.09 0.73 8.01 -51.92 -0.42 0.31 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.35 1.90 8.89 -39.29 -0.35 1.55 16 37 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.89 7.62 -51.93 -0.40 0.49 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.21 336.25 -9.55 -43.76 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.46 Total: -3.62 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.80 Total: -10.62 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.43 Total: -41.68 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.21 -9.55 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.929 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds