Wall clock time and date at job start Mon Mar 30 2020 04:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47221 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.47411 * 30.00403 * 3 2 1 6 6 H 1.48502 * 109.47222 * 150.00489 * 3 2 1 7 7 C 1.37879 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47202 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47019 * 179.97438 * 12 11 10 14 14 C 1.46944 * 124.43362 * 269.98263 * 13 12 11 15 15 C 1.55288 * 104.97102 * 197.82206 * 14 13 12 16 16 H 1.09003 * 110.91393 * 214.98010 * 15 14 13 17 17 N 1.45838 * 108.02067 * 93.02235 * 15 14 13 18 18 C 1.46116 * 114.04943 * 201.99678 * 17 15 14 19 19 C 1.53246 * 108.77294 * 60.94794 * 18 17 15 20 20 C 1.52558 * 108.33900 * 295.86129 * 19 18 17 21 21 C 1.50639 * 112.24151 * 54.61806 * 20 19 18 22 22 H 1.08997 * 108.21583 * 198.30633 * 21 20 19 23 23 C 1.34807 * 124.42808 * 90.02872 * 13 12 11 24 24 O 1.21285 * 125.36736 * 0.24734 * 23 13 12 25 25 H 0.97002 * 119.99223 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46864 * 60.00340 * 9 7 2 27 27 H 1.08998 * 109.47203 * 300.01013 * 9 7 2 28 28 H 1.09002 * 109.47246 * 60.00226 * 10 9 7 29 29 H 1.09005 * 109.47100 * 299.99981 * 10 9 7 30 30 H 1.09002 * 109.47035 * 59.99853 * 11 10 9 31 31 H 1.08998 * 109.46975 * 300.00561 * 11 10 9 32 32 H 1.08999 * 109.47261 * 60.00510 * 12 11 10 33 33 H 1.09006 * 109.47619 * 299.99803 * 12 11 10 34 34 H 1.09007 * 110.34383 * 316.69899 * 14 13 12 35 35 H 1.09007 * 110.33883 * 78.94612 * 14 13 12 36 36 H 1.00897 * 111.26163 * 75.50431 * 17 15 14 37 37 H 1.09002 * 109.61105 * 301.11532 * 18 17 15 38 38 H 1.09004 * 109.60790 * 180.77366 * 18 17 15 39 39 H 1.08992 * 109.69310 * 55.57670 * 19 18 17 40 40 H 1.09005 * 109.68774 * 176.11830 * 19 18 17 41 41 H 1.08999 * 108.92834 * 175.32446 * 20 19 18 42 42 H 1.09001 * 108.93370 * 293.90854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4742 -6.1500 -0.0018 13 7 1.7416 -7.4188 -0.0018 14 6 1.3269 -8.1388 1.2101 15 6 1.0218 -9.5847 0.7331 16 1 0.1905 -10.0122 1.2938 17 7 2.2324 -10.3803 0.9016 18 6 2.2816 -11.5749 0.0617 19 6 2.2351 -11.1462 -1.4088 20 6 0.8904 -10.4748 -1.6708 21 6 0.6260 -9.3374 -0.7191 22 1 -0.4425 -9.1225 -0.7335 23 6 1.3606 -8.0788 -1.1138 24 8 1.5738 -7.7183 -2.2520 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8914 31 1 0.8531 -5.0450 0.8885 32 1 3.1009 -6.0928 0.8882 33 1 3.1009 -6.0919 -0.8918 34 1 2.1341 -8.1439 1.9428 35 1 0.4322 -7.6829 1.6342 36 1 2.3849 -10.6136 1.8713 37 1 1.4267 -12.2137 0.2838 38 1 3.2055 -12.1201 0.2548 39 1 3.0425 -10.4428 -1.6120 40 1 2.3403 -12.0214 -2.0500 41 1 0.8793 -10.0918 -2.6912 42 1 0.0984 -11.2160 -1.5645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385252179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:18 Heat of formation + Delta-G solvation = -77.031065 kcal Electronic energy + Delta-G solvation = -20363.060644 eV Core-core repulsion = 17340.735309 eV Total energy + Delta-G solvation = -3022.325335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95927 -38.59270 -37.52563 -36.20502 -34.53866 -33.41244 -32.47220 -30.00794 -27.74483 -26.96545 -25.05091 -23.57174 -23.24156 -21.87075 -21.10588 -19.71259 -18.46901 -18.03541 -17.42556 -16.79047 -16.54153 -16.29118 -15.99585 -15.69784 -15.11299 -14.83804 -14.61706 -14.28104 -14.05859 -13.93184 -13.72789 -13.58527 -13.43181 -13.11570 -12.85569 -12.64862 -12.39123 -12.32058 -12.15463 -11.91298 -11.65681 -11.45486 -11.40159 -11.31152 -11.19355 -10.71237 -10.57454 -9.63765 -9.24492 -8.21435 -6.33287 1.38682 1.40863 1.51994 1.58757 2.08443 2.40288 3.11251 3.15476 3.27233 3.40517 3.76848 3.97585 4.08350 4.10106 4.15827 4.24313 4.37868 4.45476 4.53776 4.58352 4.65783 4.69918 4.75072 4.76348 4.83215 4.87626 4.95793 5.06322 5.09599 5.21234 5.24395 5.26079 5.35014 5.51064 5.66126 5.72945 5.83778 6.18568 6.19238 6.23193 6.61517 6.83906 7.19236 7.36159 8.90644 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047418 B = 0.003127 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.353678 B = 8951.197106 C = 9076.548253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.118 4.118 12 C 0.135 3.865 13 N -0.613 5.613 14 C 0.102 3.898 15 C 0.103 3.897 16 H 0.102 0.898 17 N -0.708 5.708 18 C 0.072 3.928 19 C -0.119 4.119 20 C -0.103 4.103 21 C -0.115 4.115 22 H 0.115 0.885 23 C 0.509 3.491 24 O -0.586 6.586 25 H 0.264 0.736 26 H -0.020 1.020 27 H -0.005 1.005 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.366 0.634 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -27.344 5.832 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.157 4.157 12 C 0.013 3.987 13 N -0.345 5.345 14 C -0.021 4.021 15 C -0.008 4.008 16 H 0.120 0.880 17 N -0.344 5.344 18 C -0.056 4.056 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.136 4.136 22 H 0.133 0.867 23 C 0.298 3.702 24 O -0.467 6.467 25 H 0.073 0.927 26 H -0.001 1.001 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.188 0.812 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.815 -26.629 4.841 27.212 hybrid contribution -0.540 0.962 -0.039 1.104 sum 2.275 -25.667 4.802 26.211 Atomic orbital electron populations 1.70112 1.07923 1.27808 1.51733 1.26051 0.95825 1.03591 0.94662 0.85402 0.78757 0.78161 0.78456 1.19992 1.20501 1.18398 1.21743 0.93650 0.92403 1.50512 0.91998 1.19006 0.94466 0.93380 0.94454 1.21372 0.98028 0.93096 1.00863 1.21830 0.98521 0.94443 1.00886 1.21343 0.93358 0.80814 1.03223 1.48511 1.55713 1.22214 1.08025 1.22759 1.01796 0.90809 0.86705 1.21831 0.92753 0.92985 0.93193 0.88042 1.58614 1.37730 1.24561 1.13479 1.21719 1.01927 0.90228 0.91727 1.21553 0.96215 1.00318 0.97652 1.20760 0.99321 0.96134 0.97902 1.21116 1.01640 0.93792 0.97097 0.86749 1.21506 0.78175 0.86438 0.84060 1.90666 1.59581 1.73543 1.22884 0.92749 1.00120 0.98695 0.91566 0.93721 0.95058 0.91476 0.87783 0.92293 0.88044 0.89601 0.81218 0.93249 0.89490 0.94374 0.89590 0.93042 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.29 21.45 0.28 -58.56 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -32.30 9.11 25.60 0.23 -32.06 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.10 -4.11 5.15 30.59 0.16 -3.96 16 11 C -0.12 -4.32 5.54 30.59 0.17 -4.15 16 12 C 0.13 4.04 5.96 86.38 0.51 4.55 16 13 N -0.61 -16.31 2.95 -815.71 -2.41 -18.72 16 14 C 0.10 1.67 7.03 87.08 0.61 2.28 16 15 C 0.10 1.33 3.78 45.75 0.17 1.50 16 16 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 17 N -0.71 -8.43 6.15 -491.99 -3.03 -11.46 16 18 C 0.07 0.78 6.58 86.53 0.57 1.35 16 19 C -0.12 -1.92 6.14 30.53 0.19 -1.73 16 20 C -0.10 -1.84 5.35 29.68 0.16 -1.68 16 21 C -0.11 -2.24 2.65 -12.37 -0.03 -2.28 16 22 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 23 C 0.51 15.57 7.57 87.74 0.66 16.24 16 24 O -0.59 -23.98 17.06 -3.04 -0.05 -24.03 16 25 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.00 7.95 -2.38 -0.02 1.98 16 34 H 0.10 1.37 8.01 -2.38 -0.02 1.35 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.37 2.50 8.89 -89.70 -0.80 1.71 16 37 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.05 1.20 7.62 -2.39 -0.02 1.18 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.77 336.25 1.03 -76.74 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.18 Total: 6.77 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.02 Total: -18.22 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -5.15 Total: -88.73 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.77 1.03 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.291 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds