Wall clock time and date at job start Mon Mar 30 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47373 * 180.02562 * 12 11 10 14 14 C 1.48316 * 124.64647 * 89.99882 * 13 12 11 15 15 C 1.52655 * 103.33421 * 200.13967 * 14 13 12 16 16 H 1.08998 * 110.77818 * 80.87590 * 15 14 13 17 17 C 1.51433 * 118.09638 * 210.62454 * 15 14 13 18 18 N 1.47815 * 106.70080 * 174.62635 * 17 15 14 19 19 C 1.46283 * 114.25514 * 301.73697 * 18 17 15 20 20 C 1.54243 * 111.94825 * 54.43607 * 19 18 17 21 21 C 1.51246 * 106.09922 * 303.84844 * 20 19 18 22 22 H 1.09003 * 109.35022 * 306.42057 * 21 20 19 23 23 C 1.36307 * 124.64910 * 269.69842 * 13 12 11 24 24 O 1.21283 * 126.11925 * 6.06715 * 23 13 12 25 25 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 31 31 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 32 32 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 33 33 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 34 34 H 1.08998 * 110.65035 * 318.59599 * 14 13 12 35 35 H 1.09003 * 110.64969 * 81.51797 * 14 13 12 36 36 H 1.08998 * 110.00205 * 293.91938 * 17 15 14 37 37 H 1.09000 * 110.00614 * 55.32322 * 17 15 14 38 38 H 1.00900 * 110.99941 * 68.17386 * 18 17 15 39 39 H 1.08998 * 108.98842 * 293.80049 * 19 18 17 40 40 H 1.09000 * 108.91746 * 175.02577 * 19 18 17 41 41 H 1.08998 * 110.11959 * 184.70344 * 20 19 18 42 42 H 1.09003 * 110.11967 * 62.98863 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 6 6.0616 -4.0790 -0.0004 13 7 7.5266 -4.0791 -0.0010 14 6 8.3702 -4.0782 1.2189 15 6 9.7175 -3.5672 0.7148 16 1 9.7132 -2.4802 0.6343 17 6 10.9711 -4.0579 1.4081 18 7 12.1170 -3.5186 0.6458 19 6 12.1395 -3.9110 -0.7632 20 6 10.8214 -3.5563 -1.4816 21 6 9.7201 -4.2310 -0.6946 22 1 9.9477 -5.2920 -0.5916 23 6 8.3011 -4.0857 -1.1226 24 8 7.9057 -3.9889 -2.2650 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6796 0.8894 27 1 3.8746 -0.6807 -0.8905 28 1 3.6585 -3.1502 0.8903 29 1 3.6578 -3.1505 -0.8897 30 1 5.9142 -2.1230 -0.8916 31 1 5.9156 -2.1224 0.8884 32 1 5.6989 -4.5921 0.8903 33 1 5.6975 -4.5936 -0.8896 34 1 7.9597 -3.4031 1.9697 35 1 8.4651 -5.0868 1.6213 36 1 10.9988 -3.6893 2.4335 37 1 10.9986 -5.1476 1.4016 38 1 12.1761 -2.5160 0.7429 39 1 12.3008 -4.9870 -0.8292 40 1 12.9631 -3.3981 -1.2598 41 1 10.8379 -3.9347 -2.5037 42 1 10.6739 -2.4763 -1.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385265291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:26 Heat of formation + Delta-G solvation = -45.527736 kcal Electronic energy + Delta-G solvation = -20312.968512 eV Core-core repulsion = 17292.009264 eV Total energy + Delta-G solvation = -3020.959248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27775 -38.11236 -36.39795 -34.91874 -32.84921 -31.89458 -31.39375 -28.90725 -26.92996 -25.73223 -23.61613 -22.48146 -21.58156 -21.12976 -20.08809 -19.35347 -16.93023 -16.66073 -16.54649 -16.24421 -15.38598 -15.05842 -14.62698 -14.32697 -14.17700 -13.92633 -13.58537 -13.30513 -13.23802 -12.72605 -12.61439 -12.39608 -12.28748 -11.97184 -11.82205 -11.55282 -11.27241 -11.12999 -10.88904 -10.70534 -10.57223 -9.94812 -9.88648 -9.70376 -9.63027 -9.17262 -8.86629 -8.60723 -8.52103 -6.02771 -4.00417 2.43290 2.87738 3.32035 3.38769 3.42711 3.72018 3.77288 4.17370 4.28869 4.46803 4.63592 4.75727 4.77044 4.92912 5.01017 5.09401 5.16259 5.26757 5.28304 5.31600 5.35381 5.43210 5.47034 5.59959 5.65277 5.67491 5.82491 5.88231 5.98123 6.33139 6.49557 6.58202 6.61878 6.71741 6.89527 6.94826 6.99320 7.32892 7.46094 7.81787 8.10247 8.56127 9.02370 9.60192 11.10844 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031529 B = 0.003451 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.858122 B = 8112.716498 C = 8288.216752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.135 4.135 12 C 0.127 3.873 13 N -0.630 5.630 14 C 0.117 3.883 15 C -0.144 4.144 16 H 0.090 0.910 17 C 0.081 3.919 18 N -0.697 5.697 19 C 0.065 3.935 20 C -0.133 4.133 21 C -0.133 4.133 22 H 0.103 0.897 23 C 0.527 3.473 24 O -0.519 6.519 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.345 0.655 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.101 -9.478 3.822 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.174 4.174 12 C 0.006 3.994 13 N -0.365 5.365 14 C -0.006 4.006 15 C -0.165 4.165 16 H 0.108 0.892 17 C -0.049 4.049 18 N -0.325 5.325 19 C -0.065 4.065 20 C -0.173 4.173 21 C -0.154 4.154 22 H 0.121 0.879 23 C 0.314 3.686 24 O -0.394 6.394 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.163 0.837 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.058 -9.844 3.391 28.062 hybrid contribution -0.580 1.526 -0.334 1.666 sum 25.478 -8.318 3.057 26.975 Atomic orbital electron populations 1.69920 1.06291 1.26838 1.51380 1.25043 0.94737 0.99192 0.94620 0.86763 0.80280 0.83622 0.78526 1.20301 1.21384 1.19125 1.21179 0.89608 0.94450 1.50553 0.91045 1.19561 0.97031 0.92370 0.96105 1.21399 0.91213 1.00055 1.01152 1.22061 0.98191 0.95287 1.01841 1.21561 0.76600 0.98394 1.02889 1.49268 1.06471 1.74353 1.06404 1.21825 0.89331 1.01615 0.87834 1.22945 0.96052 1.01395 0.96118 0.89165 1.21759 0.85546 1.00528 0.97035 1.59782 1.43172 1.17488 1.12040 1.22075 0.95846 1.01749 0.86865 1.21956 0.94351 1.00802 1.00190 1.21667 0.93960 1.02341 0.97432 0.87862 1.20371 0.88398 0.75286 0.84529 1.90728 1.79855 1.48992 1.19787 0.92776 0.96787 0.97180 0.92690 0.92649 0.92193 0.92447 0.90402 0.90258 0.89820 0.90791 0.89726 0.90119 0.83734 0.90866 0.90348 0.90195 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 11 C -0.14 -2.24 5.54 -26.73 -0.15 -2.39 16 12 C 0.13 1.75 6.01 -4.04 -0.02 1.72 16 13 N -0.63 -7.73 3.02 -172.69 -0.52 -8.25 16 14 C 0.12 0.96 7.05 -3.22 -0.02 0.94 16 15 C -0.14 -1.05 2.75 -90.10 -0.25 -1.29 16 16 H 0.09 0.73 8.02 -51.93 -0.42 0.31 16 17 C 0.08 0.44 6.45 -4.11 -0.03 0.42 16 18 N -0.70 -4.19 6.70 -113.70 -0.76 -4.95 16 19 C 0.06 0.40 6.51 -3.51 -0.02 0.37 16 20 C -0.13 -1.09 6.00 -26.96 -0.16 -1.25 16 21 C -0.13 -1.23 2.16 -92.01 -0.20 -1.43 16 22 H 0.10 0.86 7.79 -51.93 -0.40 0.46 16 23 C 0.53 7.28 7.76 -11.14 -0.09 7.19 16 24 O -0.52 -9.49 17.80 5.55 0.10 -9.40 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 38 H 0.34 1.81 8.89 -39.29 -0.35 1.47 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -34.26 333.58 -9.09 -43.35 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.42 Total: -3.67 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.62 Total: -12.03 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.51 Total: -40.93 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.10 Total: -9.40 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.26 -9.09 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385265291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.177 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds