Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47373 * 180.02562 * 12 11 10 14 14 C 1.48316 * 124.64647 * 89.99882 * 13 12 11 15 15 C 1.52655 * 103.33421 * 200.13967 * 14 13 12 16 16 H 1.08998 * 110.77818 * 80.87590 * 15 14 13 17 17 C 1.51433 * 118.09638 * 210.62454 * 15 14 13 18 18 N 1.47815 * 106.70080 * 174.62635 * 17 15 14 19 19 C 1.46283 * 114.25514 * 301.73697 * 18 17 15 20 20 C 1.54243 * 111.94825 * 54.43607 * 19 18 17 21 21 C 1.51246 * 106.09922 * 303.84844 * 20 19 18 22 22 H 1.09003 * 109.35022 * 306.42057 * 21 20 19 23 23 C 1.36307 * 124.64910 * 269.69842 * 13 12 11 24 24 O 1.21283 * 126.11925 * 6.06715 * 23 13 12 25 25 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 31 31 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 32 32 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 33 33 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 34 34 H 1.08998 * 110.65035 * 318.59599 * 14 13 12 35 35 H 1.09003 * 110.64969 * 81.51797 * 14 13 12 36 36 H 1.08998 * 110.00205 * 293.91938 * 17 15 14 37 37 H 1.09000 * 110.00614 * 55.32322 * 17 15 14 38 38 H 1.00900 * 110.99941 * 68.17386 * 18 17 15 39 39 H 1.08998 * 108.98842 * 293.80049 * 19 18 17 40 40 H 1.09000 * 108.91746 * 175.02577 * 19 18 17 41 41 H 1.08998 * 110.11959 * 184.70344 * 20 19 18 42 42 H 1.09003 * 110.11967 * 62.98863 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 6 6.0616 -4.0790 -0.0004 13 7 7.5266 -4.0791 -0.0010 14 6 8.3702 -4.0782 1.2189 15 6 9.7175 -3.5672 0.7148 16 1 9.7132 -2.4802 0.6343 17 6 10.9711 -4.0579 1.4081 18 7 12.1170 -3.5186 0.6458 19 6 12.1395 -3.9110 -0.7632 20 6 10.8214 -3.5563 -1.4816 21 6 9.7201 -4.2310 -0.6946 22 1 9.9477 -5.2920 -0.5916 23 6 8.3011 -4.0857 -1.1226 24 8 7.9057 -3.9889 -2.2650 25 1 -0.4850 0.8401 0.0004 26 1 3.8753 -0.6796 0.8894 27 1 3.8746 -0.6807 -0.8905 28 1 3.6585 -3.1502 0.8903 29 1 3.6578 -3.1505 -0.8897 30 1 5.9142 -2.1230 -0.8916 31 1 5.9156 -2.1224 0.8884 32 1 5.6989 -4.5921 0.8903 33 1 5.6975 -4.5936 -0.8896 34 1 7.9597 -3.4031 1.9697 35 1 8.4651 -5.0868 1.6213 36 1 10.9988 -3.6893 2.4335 37 1 10.9986 -5.1476 1.4016 38 1 12.1761 -2.5160 0.7429 39 1 12.3008 -4.9870 -0.8292 40 1 12.9631 -3.3981 -1.2598 41 1 10.8379 -3.9347 -2.5037 42 1 10.6739 -2.4763 -1.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385265291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = -69.693198 kcal Electronic energy + Delta-G solvation = -20314.016406 eV Core-core repulsion = 17292.009264 eV Total energy + Delta-G solvation = -3022.007141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08691 -38.94411 -37.57322 -36.33842 -34.64817 -32.92110 -32.34308 -30.36970 -27.64616 -27.15850 -24.73425 -23.27312 -22.74567 -21.89386 -21.68989 -20.31358 -18.90876 -17.79823 -17.43742 -16.96206 -16.35739 -16.34007 -15.90454 -15.71156 -15.15450 -14.81765 -14.65286 -14.36473 -14.18398 -14.07492 -13.97415 -13.66139 -13.47415 -13.08770 -12.88706 -12.59398 -12.49850 -12.16217 -12.11185 -11.85749 -11.80479 -11.62401 -11.47089 -11.36472 -11.30139 -10.80383 -10.76661 -9.72187 -9.32913 -8.33121 -6.37333 1.32245 1.33329 1.40206 1.45750 1.94914 2.32669 3.01925 3.09584 3.23946 3.52434 3.66184 3.93868 3.98421 4.07298 4.15270 4.21527 4.32292 4.36970 4.45924 4.48320 4.58844 4.61827 4.71807 4.74509 4.80188 4.85039 4.97733 4.99830 5.01923 5.06239 5.12828 5.14741 5.27722 5.47924 5.56051 5.58268 5.63889 6.02310 6.13956 6.25141 6.49500 6.70608 7.06835 7.27509 8.83828 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031529 B = 0.003451 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.858122 B = 8112.716498 C = 8288.216752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.033 0.967 9 C -0.012 4.012 10 C -0.093 4.093 11 C -0.120 4.120 12 C 0.130 3.870 13 N -0.630 5.630 14 C 0.113 3.887 15 C -0.128 4.128 16 H 0.082 0.918 17 C 0.087 3.913 18 N -0.699 5.699 19 C 0.073 3.927 20 C -0.131 4.131 21 C -0.131 4.131 22 H 0.118 0.882 23 C 0.511 3.489 24 O -0.577 6.577 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.007 0.993 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.350 0.650 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.077 -9.220 5.824 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.049 4.049 10 C -0.131 4.131 11 C -0.159 4.159 12 C 0.008 3.992 13 N -0.364 5.364 14 C -0.008 4.008 15 C -0.149 4.149 16 H 0.100 0.900 17 C -0.043 4.043 18 N -0.327 5.327 19 C -0.057 4.057 20 C -0.172 4.172 21 C -0.152 4.152 22 H 0.136 0.864 23 C 0.301 3.699 24 O -0.457 6.457 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.168 0.832 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.066 -9.602 5.441 31.091 hybrid contribution -1.591 1.379 -0.963 2.315 sum 27.475 -8.223 4.479 29.026 Atomic orbital electron populations 1.70068 1.08262 1.28221 1.52654 1.26050 0.95669 1.03607 0.94097 0.85633 0.79548 0.78264 0.79050 1.19660 1.20431 1.16983 1.21543 0.92205 0.93199 1.50374 0.94880 1.19529 0.93859 0.95386 0.96134 1.21262 0.93771 0.97122 1.00990 1.21863 0.95351 0.97288 1.01409 1.21385 0.77973 0.96393 1.03404 1.49411 1.06039 1.73236 1.07732 1.22149 0.88825 1.03632 0.86231 1.22928 0.96616 1.00753 0.94567 0.89958 1.21824 0.83928 1.01023 0.97510 1.59819 1.43229 1.18022 1.11668 1.22019 0.94619 1.02110 0.86918 1.21976 0.95330 0.99997 0.99848 1.21685 0.91205 1.03540 0.98771 0.86437 1.21239 0.90514 0.74148 0.84000 1.90685 1.81146 1.51689 1.22161 0.92417 0.95842 0.97485 0.91800 0.93988 0.94473 0.90862 0.87547 0.92177 0.88623 0.88146 0.87922 0.89313 0.83183 0.90435 0.89403 0.91453 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 45.67 27.47 68.60 1.88 47.56 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.71 5.15 30.60 0.16 -3.55 16 11 C -0.12 -3.87 5.54 30.60 0.17 -3.70 16 12 C 0.13 3.44 6.01 86.38 0.52 3.96 16 13 N -0.63 -14.45 3.02 -817.77 -2.47 -16.92 16 14 C 0.11 1.46 7.05 85.92 0.61 2.07 16 15 C -0.13 -1.48 2.75 -10.45 -0.03 -1.51 16 16 H 0.08 1.12 8.02 -2.39 -0.02 1.10 16 17 C 0.09 0.61 6.45 85.61 0.55 1.16 16 18 N -0.70 -6.20 6.70 -513.63 -3.44 -9.64 16 19 C 0.07 0.73 6.51 86.84 0.57 1.30 16 20 C -0.13 -2.02 6.00 30.44 0.18 -1.84 16 21 C -0.13 -2.22 2.16 -11.69 -0.03 -2.25 16 22 H 0.12 1.69 7.79 -2.39 -0.02 1.67 16 23 C 0.51 14.01 7.76 86.87 0.67 14.68 16 24 O -0.58 -21.98 17.80 -3.04 -0.05 -22.03 16 25 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 26 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 27 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.09 0.55 7.92 -2.39 -0.02 0.53 16 38 H 0.35 2.64 8.89 -89.69 -0.80 1.84 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.01 8.03 -2.39 -0.02 0.99 16 Total: -1.00 -76.94 333.58 0.55 -76.39 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.13 Total: 6.81 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 4.20 Total: -21.30 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -5.61 Total: -87.42 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Total: -76.94 0.55 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385265291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.700 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds