Wall clock time and date at job start Mon Mar 30 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46904 * 179.97438 * 12 11 10 14 14 C 1.47794 * 111.00452 * 290.50611 * 13 12 11 15 15 C 1.52520 * 112.28478 * 179.62574 * 14 13 12 16 16 C 1.54249 * 111.44233 * 52.42154 * 15 14 13 17 17 C 1.51537 * 106.00605 * 304.78888 * 16 15 14 18 18 H 1.09004 * 109.40635 * 305.86896 * 17 16 15 19 19 C 1.49988 * 119.73804 * 178.93636 * 17 16 15 20 20 O 1.21286 * 125.55904 * 34.98275 * 19 17 16 21 21 N 1.36179 * 108.40449 * 215.76817 * 19 17 16 22 22 C 1.48231 * 110.72959 * 5.01034 * 21 19 17 23 23 C 1.45139 * 111.00136 * 170.00206 * 13 12 11 24 24 H 1.08997 * 110.34786 * 69.36417 * 23 13 12 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 31 31 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 32 32 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 33 33 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 34 34 H 1.08997 * 108.92016 * 300.35361 * 14 13 12 35 35 H 1.09003 * 108.92331 * 58.90291 * 14 13 12 36 36 H 1.09002 * 109.08774 * 291.91226 * 15 14 13 37 37 H 1.09004 * 109.03436 * 172.89436 * 15 14 13 38 38 H 1.09004 * 110.13588 * 185.67111 * 16 15 14 39 39 H 1.08992 * 110.24304 * 63.96385 * 16 15 14 40 40 H 0.97000 * 124.63438 * 184.97015 * 21 19 17 41 41 H 1.08991 * 110.62602 * 261.46755 * 22 21 19 42 42 H 1.08999 * 110.62298 * 138.45003 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 6 2.4745 -6.1500 0.0050 13 7 1.7399 -7.4223 0.0073 14 6 1.0579 -7.6378 1.3007 15 6 0.2777 -8.9479 1.3318 16 6 1.1631 -10.1414 0.9184 17 6 1.7308 -9.7892 -0.4417 18 1 0.9156 -9.5394 -1.1208 19 6 2.6663 -10.7408 -1.1266 20 8 2.6052 -11.9509 -1.0733 21 7 3.6009 -10.0148 -1.8003 22 6 3.4397 -8.5673 -1.5246 23 6 2.6352 -8.5402 -0.2275 24 1 3.2920 -8.6864 0.6301 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 0.8539 -5.0438 0.8948 31 1 0.8532 -5.0459 -0.8851 32 1 3.1005 -6.0932 -0.8854 33 1 3.1017 -6.0914 0.8945 34 1 1.8035 -7.6514 2.0955 35 1 0.3691 -6.8120 1.4789 36 1 -0.5668 -8.8763 0.6464 37 1 -0.0966 -9.1148 2.3419 38 1 0.5625 -11.0486 0.8508 39 1 1.9703 -10.2791 1.6377 40 1 4.2797 -10.3932 -2.3808 41 1 2.8873 -8.0823 -2.3293 42 1 4.4109 -8.0928 -1.3840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395371654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:30 Heat of formation + Delta-G solvation = -48.719567 kcal Electronic energy + Delta-G solvation = -20315.485373 eV Core-core repulsion = 17294.387716 eV Total energy + Delta-G solvation = -3021.097657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18453 -38.40957 -35.98087 -35.14863 -33.50982 -31.90295 -30.55656 -28.56565 -27.02148 -25.39309 -24.04203 -22.03795 -21.79182 -20.29252 -20.01145 -19.69453 -17.48599 -16.62680 -16.22988 -15.65471 -15.41609 -15.26353 -14.48073 -14.41454 -14.18096 -13.99158 -13.73190 -13.36640 -13.17806 -12.58842 -12.53942 -12.20415 -11.77650 -11.56506 -11.48429 -11.29108 -11.05409 -10.96161 -10.66570 -10.54689 -10.46865 -10.34486 -9.88377 -9.63886 -9.39147 -9.27175 -9.02052 -8.53842 -8.34265 -5.99415 -4.01759 2.31137 2.98035 3.31324 3.37657 3.40689 3.57853 3.97884 4.20970 4.45935 4.59163 4.73817 4.80103 4.92613 5.01993 5.17604 5.22077 5.31788 5.36185 5.38585 5.43248 5.58689 5.63065 5.69494 5.77533 5.81395 5.91750 6.05950 6.10420 6.18875 6.45996 6.46910 6.65716 6.74946 6.90506 6.92828 6.98421 7.19031 7.69136 7.84701 7.98501 8.01476 8.44077 9.05821 9.62271 11.11876 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039527 B = 0.003175 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.203507 B = 8815.445037 C = 9310.037958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.049 3.951 13 N -0.510 5.510 14 C 0.047 3.953 15 C -0.117 4.117 16 C -0.096 4.096 17 C -0.128 4.128 18 H 0.118 0.882 19 C 0.533 3.467 20 O -0.528 6.528 21 N -0.742 5.742 22 C 0.115 3.885 23 C 0.060 3.940 24 H 0.058 0.942 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.410 0.590 41 H 0.086 0.914 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -19.140 0.009 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.078 4.078 13 N -0.234 5.234 14 C -0.081 4.081 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.150 4.150 18 H 0.136 0.864 19 C 0.319 3.681 20 O -0.404 6.404 21 N -0.400 5.400 22 C -0.009 4.009 23 C -0.051 4.051 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.248 0.752 41 H 0.105 0.895 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.997 -19.578 -0.270 19.984 hybrid contribution 1.404 0.985 0.308 1.742 sum 5.401 -18.593 0.039 19.362 Atomic orbital electron populations 1.69963 1.06040 1.26543 1.50972 1.25030 0.94840 0.99224 0.95415 0.86619 0.79849 0.83593 0.78088 1.20680 1.21242 1.19922 1.21286 0.92997 0.91229 1.50396 0.92798 1.19082 0.94005 0.91312 0.97153 1.21604 0.99108 0.94010 1.00042 1.21650 0.97794 0.93402 1.02195 1.22351 0.96183 0.88498 1.00761 1.62648 1.27300 1.01117 1.32340 1.22256 0.98153 0.98521 0.89121 1.21702 0.98613 0.92986 1.02144 1.21303 0.99573 0.98701 0.93849 1.21916 0.98706 0.94812 0.99533 0.86396 1.20729 0.81413 0.87582 0.78366 1.90731 1.73644 1.13517 1.62462 1.46914 1.34886 1.07891 1.50291 1.21857 1.00709 0.80977 0.97373 1.22338 0.93533 0.92194 0.96986 0.92397 0.93034 0.96607 0.96753 0.93704 0.93461 0.92509 0.91568 0.90714 0.94699 0.94707 0.89354 0.90849 0.90863 0.90621 0.91640 0.75189 0.89543 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 11 C -0.11 -1.76 5.21 -26.73 -0.14 -1.90 16 12 C 0.05 0.60 4.85 -3.82 -0.02 0.58 16 13 N -0.51 -5.52 4.73 -226.03 -1.07 -6.59 16 14 C 0.05 0.48 5.13 -3.58 -0.02 0.46 16 15 C -0.12 -1.01 5.94 -26.32 -0.16 -1.16 16 16 C -0.10 -0.87 5.93 -26.82 -0.16 -1.03 16 17 C -0.13 -1.26 2.35 -91.43 -0.22 -1.48 16 18 H 0.12 1.20 8.08 -51.93 -0.42 0.78 16 19 C 0.53 6.10 8.21 -10.69 -0.09 6.01 16 20 O -0.53 -7.97 18.02 5.55 0.10 -7.87 16 21 N -0.74 -6.44 6.40 -59.16 -0.38 -6.82 16 22 C 0.12 0.92 6.59 -3.26 -0.02 0.90 16 23 C 0.06 0.56 2.09 -67.40 -0.14 0.42 16 24 H 0.06 0.56 7.85 -51.93 -0.41 0.16 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.90 6.64 -51.93 -0.34 0.55 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.84 7.22 -51.93 -0.38 0.47 16 33 H 0.03 0.42 8.07 -51.93 -0.42 0.01 16 34 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.09 0.98 6.53 -51.93 -0.34 0.64 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 40 H 0.41 2.85 8.96 -40.82 -0.37 2.48 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -31.88 331.19 -9.56 -41.44 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.27 Total: -3.00 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.64 Total: -12.51 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.71 Total: -39.54 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.10 Total: -7.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.88 -9.56 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395371654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.277 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds