Wall clock time and date at job start Mon Mar 30 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46904 * 179.97438 * 12 11 10 14 14 C 1.47794 * 111.00452 * 290.50611 * 13 12 11 15 15 C 1.52520 * 112.28478 * 179.62574 * 14 13 12 16 16 C 1.54249 * 111.44233 * 52.42154 * 15 14 13 17 17 C 1.51537 * 106.00605 * 304.78888 * 16 15 14 18 18 H 1.09004 * 109.40635 * 305.86896 * 17 16 15 19 19 C 1.49988 * 119.73804 * 178.93636 * 17 16 15 20 20 O 1.21286 * 125.55904 * 34.98275 * 19 17 16 21 21 N 1.36179 * 108.40449 * 215.76817 * 19 17 16 22 22 C 1.48231 * 110.72959 * 5.01034 * 21 19 17 23 23 C 1.45139 * 111.00136 * 170.00206 * 13 12 11 24 24 H 1.08997 * 110.34786 * 69.36417 * 23 13 12 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 31 31 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 32 32 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 33 33 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 34 34 H 1.08997 * 108.92016 * 300.35361 * 14 13 12 35 35 H 1.09003 * 108.92331 * 58.90291 * 14 13 12 36 36 H 1.09002 * 109.08774 * 291.91226 * 15 14 13 37 37 H 1.09004 * 109.03436 * 172.89436 * 15 14 13 38 38 H 1.09004 * 110.13588 * 185.67111 * 16 15 14 39 39 H 1.08992 * 110.24304 * 63.96385 * 16 15 14 40 40 H 0.97000 * 124.63438 * 184.97015 * 21 19 17 41 41 H 1.08991 * 110.62602 * 261.46755 * 22 21 19 42 42 H 1.08999 * 110.62298 * 138.45003 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 6 2.4745 -6.1500 0.0050 13 7 1.7399 -7.4223 0.0073 14 6 1.0579 -7.6378 1.3007 15 6 0.2777 -8.9479 1.3318 16 6 1.1631 -10.1414 0.9184 17 6 1.7308 -9.7892 -0.4417 18 1 0.9156 -9.5394 -1.1208 19 6 2.6663 -10.7408 -1.1266 20 8 2.6052 -11.9509 -1.0733 21 7 3.6009 -10.0148 -1.8003 22 6 3.4397 -8.5673 -1.5246 23 6 2.6352 -8.5402 -0.2275 24 1 3.2920 -8.6864 0.6301 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 0.8539 -5.0438 0.8948 31 1 0.8532 -5.0459 -0.8851 32 1 3.1005 -6.0932 -0.8854 33 1 3.1017 -6.0914 0.8945 34 1 1.8035 -7.6514 2.0955 35 1 0.3691 -6.8120 1.4789 36 1 -0.5668 -8.8763 0.6464 37 1 -0.0966 -9.1148 2.3419 38 1 0.5625 -11.0486 0.8508 39 1 1.9703 -10.2791 1.6377 40 1 4.2797 -10.3932 -2.3808 41 1 2.8873 -8.0823 -2.3293 42 1 4.4109 -8.0928 -1.3840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395371654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:30 Heat of formation + Delta-G solvation = -71.015988 kcal Electronic energy + Delta-G solvation = -20316.452218 eV Core-core repulsion = 17294.387716 eV Total energy + Delta-G solvation = -3022.064502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99348 -39.33436 -37.02706 -36.34591 -35.03893 -33.51974 -31.33698 -30.11146 -27.86754 -26.73676 -25.30294 -23.19682 -22.80812 -21.58937 -21.11146 -20.54475 -18.42849 -18.27119 -17.43042 -16.59072 -16.46198 -16.35721 -16.19964 -15.50353 -15.08742 -14.85942 -14.57005 -14.43553 -14.37289 -13.99431 -13.60388 -13.52684 -13.23753 -13.00795 -12.78714 -12.32078 -12.29904 -12.26645 -12.13305 -11.82466 -11.73843 -11.39169 -11.26106 -11.19623 -11.03434 -10.64229 -10.52403 -10.15161 -9.39011 -8.17358 -6.28367 1.41532 1.42696 1.43321 1.53701 2.25777 2.42769 2.74278 3.15701 3.19942 3.44854 3.84564 3.99726 4.01962 4.11274 4.22472 4.25327 4.36019 4.54054 4.57852 4.60841 4.67826 4.71957 4.81362 4.85974 4.88015 4.97906 4.99186 5.08309 5.19552 5.28694 5.33687 5.37208 5.44072 5.60691 5.69748 5.83157 5.90919 5.92306 6.03135 6.14398 6.29579 6.90149 7.18140 7.41044 8.94374 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039527 B = 0.003175 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.203507 B = 8815.445037 C = 9310.037958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.102 4.102 12 C 0.060 3.940 13 N -0.515 5.515 14 C 0.045 3.955 15 C -0.109 4.109 16 C -0.094 4.094 17 C -0.126 4.126 18 H 0.116 0.884 19 C 0.528 3.472 20 O -0.571 6.571 21 N -0.729 5.729 22 C 0.117 3.883 23 C 0.063 3.937 24 H 0.061 0.939 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.419 0.581 41 H 0.090 0.910 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -19.024 -0.027 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.068 4.068 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.147 4.147 16 C -0.132 4.132 17 C -0.148 4.148 18 H 0.133 0.867 19 C 0.315 3.685 20 O -0.450 6.450 21 N -0.386 5.386 22 C -0.007 4.007 23 C -0.047 4.047 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.259 0.741 41 H 0.108 0.892 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.721 -19.451 -0.320 20.278 hybrid contribution 0.837 0.958 0.311 1.310 sum 6.559 -18.493 -0.010 19.622 Atomic orbital electron populations 1.70101 1.07833 1.27676 1.51925 1.25998 0.95754 1.03399 0.94887 0.85471 0.78711 0.78531 0.78488 1.19778 1.20922 1.18633 1.21773 0.93605 0.92560 1.50142 0.92107 1.19022 0.94563 0.93333 0.94532 1.21401 0.97913 0.93620 1.00553 1.21461 0.98025 0.93034 1.01506 1.22153 0.95140 0.87691 1.01792 1.62563 1.27572 1.00982 1.32814 1.22292 0.98144 0.98842 0.89000 1.21649 0.98126 0.91988 1.02958 1.21294 0.99641 0.98771 0.93489 1.21895 0.98484 0.94610 0.99763 0.86668 1.20972 0.81910 0.87163 0.78446 1.90707 1.74839 1.15276 1.64183 1.46889 1.34181 1.08128 1.49417 1.21972 1.01755 0.80347 0.96644 1.22340 0.93323 0.91123 0.97905 0.92079 0.92863 0.99264 0.99408 0.93235 0.92707 0.93080 0.92518 0.89226 0.94136 0.94289 0.90514 0.91132 0.89441 0.90740 0.91449 0.74109 0.89174 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.70 5.15 30.60 0.16 -3.54 16 11 C -0.10 -3.11 5.21 30.60 0.16 -2.95 16 12 C 0.06 1.31 4.85 86.30 0.42 1.73 16 13 N -0.51 -10.16 4.73 -869.04 -4.11 -14.27 16 14 C 0.04 0.84 5.13 85.97 0.44 1.29 16 15 C -0.11 -1.74 5.94 30.86 0.18 -1.55 16 16 C -0.09 -1.59 5.93 30.54 0.18 -1.40 16 17 C -0.13 -2.32 2.35 -11.32 -0.03 -2.34 16 18 H 0.12 2.21 8.08 -2.38 -0.02 2.19 16 19 C 0.53 11.53 8.21 87.21 0.72 12.25 16 20 O -0.57 -17.12 18.02 -3.05 -0.05 -17.17 16 21 N -0.73 -11.22 6.40 -458.66 -2.94 -14.15 16 22 C 0.12 1.53 6.59 85.93 0.57 2.10 16 23 C 0.06 1.05 2.09 46.06 0.10 1.14 16 24 H 0.06 1.02 7.85 -2.39 -0.02 1.00 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.60 6.64 -2.39 -0.02 1.58 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.73 7.22 -2.39 -0.02 1.71 16 33 H 0.04 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 35 H 0.08 1.64 6.53 -2.39 -0.02 1.62 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.12 8.00 -2.39 -0.02 1.10 16 40 H 0.42 4.99 8.96 -92.71 -0.83 4.16 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.05 331.19 -0.89 -69.95 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.16 Total: 8.51 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.74 Total: -22.06 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -6.76 Total: -85.09 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.05 Total: -17.17 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.05 -0.89 -69.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395371654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.070 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds