Wall clock time and date at job start Mon Mar 30 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47465 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47518 * 179.97438 * 12 11 10 14 14 C 1.46698 * 110.99999 * 294.54062 * 13 12 11 15 15 C 1.51371 * 109.31215 * 169.43223 * 14 13 12 16 16 C 1.51659 * 110.69998 * 58.72140 * 15 14 13 17 17 C 1.49856 * 114.93126 * 315.77088 * 16 15 14 18 18 H 1.09011 * 107.12430 * 156.15775 * 17 16 15 19 19 C 1.52367 * 113.89078 * 275.11101 * 17 16 15 20 20 O 1.21278 * 125.23551 * 326.70245 * 19 17 16 21 21 N 1.34866 * 109.36158 * 146.70001 * 19 17 16 22 22 C 1.46981 * 111.13799 * 359.31706 * 21 19 17 23 23 C 1.46662 * 111.00573 * 170.00057 * 13 12 11 24 24 H 1.09008 * 111.95478 * 53.77024 * 23 13 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 29 29 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 30 30 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 31 31 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 32 32 H 1.08997 * 109.47279 * 300.00209 * 12 11 10 33 33 H 1.09004 * 109.47330 * 59.99722 * 12 11 10 34 34 H 1.08999 * 109.61919 * 288.59483 * 14 13 12 35 35 H 1.09004 * 109.61846 * 49.13524 * 14 13 12 36 36 H 1.09000 * 108.96641 * 298.55083 * 15 14 13 37 37 H 1.08998 * 109.39994 * 179.17098 * 15 14 13 38 38 H 1.09002 * 108.39212 * 194.36140 * 16 15 14 39 39 H 1.08993 * 108.25704 * 77.08827 * 16 15 14 40 40 H 0.97005 * 124.43060 * 179.29603 * 21 19 17 41 41 H 1.08994 * 110.35625 * 222.95249 * 22 21 19 42 42 H 1.09004 * 110.43691 * 100.71625 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0615 -4.0791 -0.0022 13 7 7.5305 -4.0792 -0.0029 14 6 8.0557 -3.5099 -1.2487 15 6 9.5462 -3.2867 -1.1078 16 6 10.2561 -4.5896 -0.7941 17 6 9.5871 -5.4397 0.2429 18 1 9.9119 -6.4666 0.0744 19 6 9.9520 -5.0679 1.6748 20 8 11.0292 -4.6421 2.0342 21 7 8.8908 -5.2864 2.4778 22 6 7.7415 -5.7896 1.7121 23 6 8.0562 -5.4277 0.2341 24 1 7.6441 -6.1546 -0.4658 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 3.6579 -3.1514 0.8880 29 1 3.6585 -3.1495 -0.8920 30 1 5.9148 -2.1220 -0.8910 31 1 5.9149 -2.1236 0.8890 32 1 5.6982 -4.5934 0.8875 33 1 5.6981 -4.5925 -0.8924 34 1 7.8808 -4.2042 -2.0706 35 1 7.5596 -2.5616 -1.4554 36 1 9.7233 -2.5772 -0.2995 37 1 9.9405 -2.8774 -2.0380 38 1 11.2643 -4.3579 -0.4507 39 1 10.3325 -5.1672 -1.7153 40 1 8.8866 -5.1320 3.4354 41 1 6.8249 -5.2968 2.0361 42 1 7.6512 -6.8698 1.8269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395371658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:39 Heat of formation + Delta-G solvation = -46.786692 kcal Electronic energy + Delta-G solvation = -20616.869956 eV Core-core repulsion = 17595.856115 eV Total energy + Delta-G solvation = -3021.013841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13672 -38.20941 -35.89752 -35.30323 -33.56881 -31.97245 -30.93515 -28.97190 -26.99753 -25.64340 -23.91115 -22.38131 -21.57858 -20.54783 -20.03660 -18.90328 -17.41614 -16.83438 -16.61763 -15.75740 -15.69565 -15.22365 -14.55941 -14.28807 -14.21460 -13.84530 -13.58547 -13.32201 -12.87656 -12.77227 -12.64588 -12.43068 -12.04858 -11.90198 -11.74617 -11.27761 -11.01836 -10.90941 -10.75432 -10.56510 -10.34012 -9.91586 -9.86388 -9.66625 -9.50379 -9.24878 -9.15654 -8.52772 -8.44647 -6.03636 -4.01318 2.47791 3.20881 3.31844 3.39155 3.43313 3.61901 4.03180 4.05138 4.42952 4.46423 4.75793 4.87111 4.90217 5.10534 5.14083 5.22481 5.29054 5.30865 5.32348 5.45668 5.48546 5.52159 5.66853 5.76954 5.82642 5.96998 6.01719 6.08827 6.15527 6.35380 6.61396 6.63195 6.74490 6.83001 6.87985 6.96575 7.05367 7.33402 7.46267 7.81521 8.12783 8.55202 9.01476 9.59517 11.09953 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.003664 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.690724 B = 7639.159566 C = 7842.158496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.117 4.117 12 C 0.053 3.947 13 N -0.531 5.531 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.101 4.101 17 C -0.109 4.109 18 H 0.099 0.901 19 C 0.533 3.467 20 O -0.536 6.536 21 N -0.725 5.725 22 C 0.105 3.895 23 C 0.074 3.926 24 H 0.076 0.924 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.410 0.590 41 H 0.092 0.908 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.014 -13.424 -0.789 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.256 5.256 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.131 4.131 18 H 0.117 0.883 19 C 0.319 3.681 20 O -0.413 6.413 21 N -0.380 5.380 22 C -0.020 4.020 23 C -0.036 4.036 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.248 0.752 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.591 -12.824 -0.345 23.418 hybrid contribution -0.125 0.403 -0.195 0.464 sum 19.466 -12.421 -0.540 23.098 Atomic orbital electron populations 1.69922 1.06321 1.26844 1.51384 1.25049 0.94727 0.99214 0.94605 0.86767 0.80342 0.83584 0.78520 1.20309 1.19019 1.21444 1.21184 0.89689 0.94375 1.50580 0.91142 1.19563 0.96938 0.92470 0.96147 1.21421 0.91765 0.99824 1.00888 1.21714 0.97283 0.94330 1.02107 1.22288 0.85213 0.99084 1.00814 1.61983 1.08561 1.19136 1.35890 1.21805 0.95521 1.00421 0.89807 1.20993 0.94669 0.97498 1.02214 1.20339 1.00204 0.96226 0.97126 1.21117 0.95506 1.02166 0.94313 0.88315 1.20999 0.83190 0.75600 0.88337 1.90720 1.24371 1.45969 1.80199 1.46138 1.13496 1.67533 1.10819 1.22500 0.90098 0.98697 0.90700 1.22499 0.93551 0.91541 0.95967 0.90595 0.92791 0.96794 0.97116 0.92887 0.93020 0.92425 0.91700 0.90567 0.94615 0.94793 0.89465 0.91240 0.91056 0.90552 0.91712 0.75188 0.88955 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.89 5.15 -26.73 -0.14 -2.03 16 11 C -0.12 -1.75 5.15 -26.74 -0.14 -1.88 16 12 C 0.05 0.62 4.78 -3.83 -0.02 0.60 16 13 N -0.53 -5.73 4.31 -226.46 -0.98 -6.71 16 14 C 0.05 0.54 5.29 -4.76 -0.03 0.51 16 15 C -0.12 -1.13 6.08 -28.23 -0.17 -1.30 16 16 C -0.10 -0.92 5.40 -28.97 -0.16 -1.08 16 17 C -0.11 -1.00 2.66 -92.45 -0.25 -1.25 16 18 H 0.10 0.72 8.13 -51.92 -0.42 0.30 16 19 C 0.53 6.37 8.13 -10.12 -0.08 6.29 16 20 O -0.54 -8.48 17.46 5.56 0.10 -8.38 16 21 N -0.72 -6.89 6.28 -58.05 -0.36 -7.26 16 22 C 0.11 0.81 7.19 -2.52 -0.02 0.79 16 23 C 0.07 0.64 2.96 -66.53 -0.20 0.44 16 24 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.86 6.33 -51.93 -0.33 0.53 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.83 6.07 -51.93 -0.31 0.51 16 33 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 35 H 0.09 0.99 6.04 -51.93 -0.31 0.67 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.79 7.58 -51.93 -0.39 0.39 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.41 3.42 8.96 -40.82 -0.37 3.05 16 41 H 0.09 0.75 6.02 -51.93 -0.31 0.43 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -33.26 323.76 -9.02 -42.28 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.03 Total: -2.03 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.73 Total: -12.73 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.57 Total: -41.25 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.10 Total: -8.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.26 -9.02 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395371658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.502 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds